# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 141 SSB PF00436.20 104 1.3e-28 90.2 0.1 1 1 5.3e-30 1.6e-28 89.9 0.1 1 102 1 102 1 104 0.98 # 15421 # 15843 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_11 - 336 DUF87 PF01935.12 229 2.9e-05 15.2 0.0 1 1 1.7e-06 5.4e-05 14.3 0.0 27 48 164 185 142 193 0.84 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 Septin PF00735.13 281 2.3e-05 14.7 0.0 1 1 1.2e-06 3.7e-05 14.0 0.0 6 29 162 185 158 209 0.80 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_22 PF13401.1 131 5.5e-06 17.8 0.0 1 1 3.9e-07 1.2e-05 16.7 0.0 4 41 160 208 156 259 0.71 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 ATP_bind_1 PF03029.12 238 7.3e-05 13.6 0.0 1 1 3.8e-06 0.00012 12.9 0.0 1 23 165 187 165 193 0.87 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_17 PF13207.1 121 2.8e-06 19.5 0.1 1 1 2.3e-07 7.2e-06 18.1 0.1 2 49 163 207 162 302 0.82 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 MobB PF03205.9 140 1.3e-05 16.2 0.4 1 2 2.3e-06 7.1e-05 13.8 0.0 3 27 163 187 161 199 0.81 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 MobB PF03205.9 140 1.3e-05 16.2 0.4 2 2 0.065 2 -0.6 0.1 20 44 296 320 293 322 0.81 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 T2SE PF00437.15 272 3.9e-64 207.3 0.0 1 1 1.5e-65 4.5e-64 207.1 0.0 6 269 14 312 9 315 0.95 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 Zeta_toxin PF06414.7 201 4e-05 14.0 0.0 1 1 2.1e-06 6.6e-05 13.3 0.0 17 49 161 194 147 218 0.85 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_16 PF13191.1 185 1.6e-05 16.2 0.0 1 1 7e-07 2.2e-05 15.8 0.0 24 81 160 234 147 306 0.76 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_23 PF13476.1 202 0.00057 11.5 5.1 1 1 9.6e-06 0.0003 12.4 2.1 22 37 163 178 141 185 0.89 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_18 PF13238.1 129 4e-05 15.2 0.1 1 1 5e-06 0.00016 13.3 0.0 1 18 163 180 163 227 0.76 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_14 PF13173.1 128 5.5e-06 17.6 0.1 1 2 0.028 0.87 0.8 0.0 70 102 35 66 11 74 0.85 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_14 PF13173.1 128 5.5e-06 17.6 0.1 2 2 2.3e-06 7.1e-05 14.0 0.0 2 54 160 211 159 254 0.75 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 GvpD PF07088.6 484 0.00015 11.3 0.0 1 1 6.5e-06 0.0002 10.9 0.0 8 42 158 192 150 258 0.83 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_29 PF13555.1 62 1.3e-05 16.0 0.0 1 1 9.3e-07 2.9e-05 14.9 0.0 22 40 159 177 140 184 0.81 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 Sigma54_activat PF00158.21 168 4.5e-05 14.2 0.0 1 1 3.2e-06 9.9e-05 13.1 0.0 14 43 152 181 143 198 0.84 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_10 - 568 TraG-D_C PF12696.2 128 7.4e-28 88.3 0.0 1 1 9.5e-29 3e-27 86.3 0.0 2 127 370 492 369 493 0.88 # 7468 # 9171 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.315 1_11 - 336 NTPase_1 PF03266.10 168 0.00021 12.3 0.1 1 1 1.4e-05 0.00042 11.3 0.1 1 23 162 184 162 192 0.88 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_30 PF13604.1 196 0.00043 11.1 0.0 1 1 2.2e-05 0.00067 10.5 0.0 12 44 155 186 146 193 0.72 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 FtsK_SpoIIIE PF01580.13 205 3.5e-08 24.4 0.0 1 1 1.9e-09 5.8e-08 23.7 0.0 36 59 154 181 134 187 0.77 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 ABC_tran PF00005.22 137 1.3e-07 23.3 0.0 1 1 8.3e-09 2.6e-07 22.3 0.0 5 50 154 200 152 226 0.84 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_22 - 923 AAA_10 PF12846.2 304 2.4e-38 123.4 1.4 1 2 0.093 0.96 -0.0 0.0 126 161 221 283 154 335 0.76 # 16993 # 19761 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_22 - 923 AAA_10 PF12846.2 304 2.4e-38 123.4 1.4 2 2 7.4e-39 7.6e-38 121.8 0.4 2 301 546 843 545 845 0.83 # 16993 # 19761 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_11 - 336 AAA_10 PF12846.2 304 1.5e-06 19.0 0.0 1 1 1.8e-07 1.9e-06 18.7 0.0 2 37 161 196 160 333 0.74 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_10 - 568 AAA_10 PF12846.2 304 4.9e-05 14.1 0.0 1 1 8.1e-06 8.4e-05 13.3 0.0 32 302 118 454 91 455 0.75 # 7468 # 9171 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.315 1_11 - 336 ResIII PF04851.10 184 2.2e-05 15.6 0.0 1 1 1.4e-06 4.4e-05 14.6 0.0 3 64 145 201 143 237 0.72 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 DEAD PF00270.24 169 1.7e-06 18.9 0.0 1 1 9.4e-08 2.9e-06 18.1 0.0 2 69 148 212 147 243 0.71 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_10 - 568 TrwB_AAD_bind PF10412.4 386 6.8e-21 65.5 0.0 1 2 2.2e-06 3.5e-05 13.7 0.0 39 150 111 234 88 261 0.71 # 7468 # 9171 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.315 1_10 - 568 TrwB_AAD_bind PF10412.4 386 6.8e-21 65.5 0.0 2 2 2.6e-17 4e-16 49.7 0.0 185 380 309 506 270 508 0.84 # 7468 # 9171 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.315 1_11 - 336 TrwB_AAD_bind PF10412.4 386 6e-05 13.0 0.0 1 1 6.1e-06 9.5e-05 12.3 0.0 16 42 161 187 154 217 0.85 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_10 - 568 T4SS-DNA_transf PF02534.9 469 1.2e-106 348.3 0.1 1 1 5.2e-108 1.6e-106 347.8 0.1 3 460 58 527 46 535 0.88 # 7468 # 9171 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.315 1_11 - 336 RNA_helicase PF00910.17 107 7.9e-05 14.1 0.0 1 1 6e-06 0.00019 12.9 0.0 1 23 163 185 163 224 0.79 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 UPF0079 PF02367.12 123 9.9e-06 16.5 0.0 1 1 6e-07 1.9e-05 15.6 0.0 8 42 153 187 147 205 0.85 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_24 PF13479.1 213 7.1e-05 13.7 0.0 1 1 5e-06 0.00015 12.6 0.0 5 33 162 188 159 217 0.84 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 NACHT PF05729.7 166 1.1e-05 16.4 0.0 1 1 6e-07 1.9e-05 15.6 0.0 3 22 163 182 161 188 0.89 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_11 - 336 AAA_25 PF13481.1 194 8.3e-05 13.3 0.0 1 1 4.1e-06 0.00013 12.7 0.0 29 56 157 183 130 200 0.76 # 9279 # 10286 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/00106e3a-01e3-4a71-8bc1-08c1945da0a0 # Target file: checkm_output/bins/pNZ_AAFL01000018.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_AAFL01000018.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/00106e3a-01e3-4a71-8bc1-08c1945da0a0 checkm_output/bins/pNZ_AAFL01000018.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:02 2020 # [ok]