# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 598 IstB_IS21 PF01695.12 178 2.8e-06 18.7 0.1 1 2 1.5e-06 7.1e-05 14.2 0.0 46 85 32 71 27 86 0.90 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_11 - 598 IstB_IS21 PF01695.12 178 2.8e-06 18.7 0.1 2 2 0.013 0.64 1.3 0.0 98 140 110 160 98 187 0.71 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_34 - 640 AIG1 PF04548.11 212 0.00014 12.9 0.0 1 1 6.6e-06 0.00032 11.7 0.0 32 62 51 81 43 108 0.84 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_3 - 142 SSB PF00436.20 104 2.7e-28 89.9 0.2 1 1 7.1e-30 3.5e-28 89.5 0.2 1 102 1 102 1 104 0.98 # 1282 # 1707 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_44 - 331 DUF87 PF01935.12 229 5.4e-05 15.0 0.1 1 1 2.2e-06 0.00011 14.0 0.1 28 48 165 185 157 193 0.84 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 Septin PF00735.13 281 3.6e-05 14.7 0.0 1 1 2.3e-06 5.7e-05 14.1 0.0 6 29 162 185 158 209 0.80 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_34 - 640 Septin PF00735.13 281 0.00013 12.9 0.1 1 1 9.7e-06 0.00024 12.0 0.1 7 77 6 82 3 91 0.68 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_44 - 331 AAA_22 PF13401.1 131 9.3e-06 17.7 0.0 1 1 3.9e-07 1.9e-05 16.7 0.0 4 41 160 208 156 256 0.70 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 ATP_bind_1 PF03029.12 238 0.00011 13.6 0.0 1 1 3.7e-06 0.00018 13.0 0.0 1 23 165 187 165 193 0.87 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 PRK PF00485.13 194 0.0003 12.3 0.0 1 1 1.2e-05 0.00056 11.4 0.0 2 24 163 185 162 221 0.83 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 AAA_17 PF13207.1 121 4.4e-06 19.5 0.1 1 1 2.2e-07 1.1e-05 18.2 0.1 2 49 163 207 162 303 0.82 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_20 - 94 AAA_21 PF13304.1 303 0.0023 9.7 10.7 1 1 5.6e-05 0.0027 9.5 10.7 80 162 6 88 2 92 0.93 # 13775 # 14056 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.209 1_34 - 640 Miro PF08477.8 119 9.8e-06 18.0 0.0 1 1 4.4e-07 2.1e-05 16.9 0.0 9 119 13 131 5 131 0.75 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_44 - 331 MobB PF03205.9 140 2.9e-05 15.7 0.6 1 2 2.2e-06 0.00011 13.8 0.0 3 27 163 187 161 199 0.81 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 MobB PF03205.9 140 2.9e-05 15.7 0.6 2 2 0.074 3.6 -0.8 0.1 20 44 296 320 294 321 0.80 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_25 - 1932 Helicase_C PF00271.26 78 1.2e-07 23.4 0.3 1 2 0.055 2.7 -0.1 0.0 14 40 1078 1104 1064 1106 0.84 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_25 - 1932 Helicase_C PF00271.26 78 1.2e-07 23.4 0.3 2 2 4.2e-08 2e-06 19.5 0.0 12 78 1515 1583 1508 1583 0.86 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_44 - 331 T2SE PF00437.15 272 1.6e-63 206.0 0.0 1 1 3.8e-65 1.8e-63 205.8 0.0 5 269 13 312 9 315 0.94 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 Zeta_toxin PF06414.7 201 6.1e-05 14.1 0.0 1 1 2e-06 0.0001 13.4 0.0 17 49 161 194 146 218 0.85 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 Arch_ATPase PF01637.13 234 0.00013 13.6 0.0 1 1 4.1e-06 0.0002 13.0 0.0 23 81 163 225 151 273 0.83 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 AAA_16 PF13191.1 185 2.3e-05 16.3 0.0 1 1 6.4e-07 3.1e-05 15.9 0.0 24 81 160 234 144 305 0.76 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 AAA_23 PF13476.1 202 0.0019 10.4 6.5 1 2 0.09 4.4 -0.6 0.3 106 106 110 110 7 158 0.50 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 AAA_23 PF13476.1 202 0.0019 10.4 6.5 2 2 8.7e-06 0.00043 12.5 1.5 22 37 163 178 160 184 0.89 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 AAA_18 PF13238.1 129 0.00014 14.1 1.3 1 1 4.9e-06 0.00024 13.3 0.0 1 18 163 180 163 227 0.76 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_27 - 187 CbiA PF01656.18 195 1.8e-08 25.9 0.1 1 2 6.4e-07 3.2e-05 15.3 0.0 1 24 3 26 3 32 0.92 # 23902 # 24462 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_27 - 187 CbiA PF01656.18 195 1.8e-08 25.9 0.1 2 2 5.1e-05 0.0025 9.1 0.0 95 178 54 131 29 151 0.68 # 23902 # 24462 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_11 - 598 KaiC PF06745.8 227 6.3e-05 14.0 0.0 1 2 8.5e-06 0.00042 11.3 0.0 16 70 30 83 23 186 0.86 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_11 - 598 KaiC PF06745.8 227 6.3e-05 14.0 0.0 2 2 0.058 2.8 -1.2 0.0 130 156 326 352 316 358 0.83 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_44 - 331 AAA_14 PF13173.1 128 2.4e-05 16.2 0.1 1 1 2.2e-06 0.00011 14.0 0.0 2 54 160 211 159 254 0.75 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 GvpD PF07088.6 484 0.00023 11.4 0.0 1 1 6.1e-06 0.0003 11.0 0.0 8 42 158 192 150 258 0.83 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_34 - 640 TIGR03594 TIGR03594 432 2.9e-08 24.6 0.3 1 3 0.044 2.2 -1.3 0.0 176 211 4 42 2 50 0.74 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_34 - 640 TIGR03594 TIGR03594 432 2.9e-08 24.6 0.3 2 3 2e-08 9.9e-07 19.6 0.1 31 123 51 135 47 154 0.87 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_34 - 640 TIGR03594 TIGR03594 432 2.9e-08 24.6 0.3 3 3 0.006 0.3 1.5 0.0 304 347 196 239 187 265 0.79 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_44 - 331 AAA_29 PF13555.1 62 2.3e-05 15.8 0.0 1 1 1.1e-06 5.4e-05 14.6 0.0 22 40 159 177 142 184 0.85 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_11 - 598 AAA PF00004.24 132 5.1e-05 15.4 0.1 1 2 2.5e-05 0.0012 10.9 0.0 2 105 37 166 36 177 0.66 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_11 - 598 AAA PF00004.24 132 5.1e-05 15.4 0.1 2 2 0.025 1.2 1.2 0.0 47 74 411 434 377 459 0.70 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_44 - 331 Sigma54_activat PF00158.21 168 4.9e-05 14.8 0.0 1 1 2.1e-06 0.00011 13.7 0.0 11 43 149 181 142 198 0.84 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_34 - 640 MMR_HSR1 PF01926.18 116 2.3e-08 26.0 0.1 1 1 8.6e-10 4.2e-08 25.1 0.1 4 116 8 129 5 129 0.68 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_43 - 604 TraG-D_C PF12696.2 128 1.4e-28 91.2 0.0 1 2 1.9e-29 9.1e-28 88.6 0.0 2 127 406 528 405 529 0.89 # 38416 # 40227 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_43 - 604 TraG-D_C PF12696.2 128 1.4e-28 91.2 0.0 2 2 0.069 3.4 -0.5 0.0 52 70 580 601 560 603 0.74 # 38416 # 40227 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_44 - 331 NTPase_1 PF03266.10 168 0.00034 12.2 0.1 1 1 1.3e-05 0.00065 11.3 0.1 1 23 162 184 162 192 0.88 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_11 - 598 DnaB_C PF03796.10 259 8e-06 16.7 0.0 1 2 6.8e-07 3.3e-05 14.7 0.0 13 117 27 136 23 156 0.79 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_11 - 598 DnaB_C PF03796.10 259 8e-06 16.7 0.0 2 2 0.011 0.54 0.9 0.0 129 185 119 177 100 179 0.77 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_25 - 1932 Methyltransf_26 PF13659.1 117 2.8e-13 41.9 0.0 1 1 1.8e-14 8.6e-13 40.3 0.0 3 116 311 421 309 422 0.84 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_44 - 331 FtsK_SpoIIIE PF01580.13 205 7.9e-08 23.9 0.0 1 1 2.7e-09 1.3e-07 23.1 0.0 39 59 157 181 132 187 0.81 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_25 - 1932 MTS PF05175.9 170 2.6e-05 15.6 0.0 1 1 1.5e-06 7.3e-05 14.1 0.0 31 142 308 422 301 442 0.75 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_32 - 267 VirE PF05272.6 198 0.00031 12.1 0.1 1 1 1.1e-05 0.00054 11.3 0.1 44 117 122 197 96 198 0.81 # 27051 # 27851 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_44 - 331 ABC_tran PF00005.22 137 1.7e-07 23.6 0.0 1 1 6.9e-09 3.4e-07 22.6 0.0 4 50 153 200 151 226 0.84 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_25 - 1932 Eco57I PF07669.6 106 2.1e-08 26.4 2.1 1 1 1.3e-09 6.3e-08 24.9 0.3 3 104 371 472 369 474 0.83 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_6 - 923 AAA_10 PF12846.2 304 2.5e-38 124.0 1.7 1 1 3.8e-39 6.1e-38 122.8 0.4 2 301 546 843 545 845 0.84 # 2971 # 5739 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.292 1_44 - 331 AAA_10 PF12846.2 304 2.8e-06 18.8 0.0 1 1 2e-07 3.3e-06 18.6 0.0 2 37 161 196 160 323 0.79 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_43 - 604 AAA_10 PF12846.2 304 3.2e-05 15.3 0.0 1 1 3e-06 4.9e-05 14.7 0.0 25 302 147 490 126 491 0.70 # 38416 # 40227 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_25 - 1932 ResIII PF04851.10 184 2.5e-10 32.4 9.7 1 1 1e-11 2.5e-10 32.4 9.7 2 161 999 1195 998 1242 0.57 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_44 - 331 ResIII PF04851.10 184 3.7e-05 15.5 0.0 1 1 2.9e-06 7.2e-05 14.6 0.0 3 64 145 201 140 237 0.70 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_34 - 640 GTP_EFTU_D2 PF03144.20 74 3.2e-09 28.8 0.0 1 1 1.3e-10 6.6e-09 27.8 0.0 3 60 265 316 263 323 0.90 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_25 - 1932 DEAD PF00270.24 169 1.1e-08 26.6 0.8 1 2 6.2e-08 1.5e-06 19.7 0.1 2 107 1003 1109 1002 1244 0.78 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_25 - 1932 DEAD PF00270.24 169 1.1e-08 26.6 0.8 2 2 0.073 1.8 -0.1 0.0 120 150 1885 1917 1843 1926 0.70 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_44 - 331 DEAD PF00270.24 169 4.5e-06 18.1 0.0 1 1 3.4e-07 8.4e-06 17.2 0.0 3 69 149 212 147 243 0.69 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_43 - 604 TrwB_AAD_bind PF10412.4 386 8.4e-20 62.5 0.0 1 2 3.8e-05 0.00093 9.7 0.0 42 125 150 245 121 290 0.72 # 38416 # 40227 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_43 - 604 TrwB_AAD_bind PF10412.4 386 8.4e-20 62.5 0.0 2 2 1.2e-17 3e-16 50.8 0.0 185 380 345 542 307 544 0.84 # 38416 # 40227 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_44 - 331 TrwB_AAD_bind PF10412.4 386 9.8e-05 12.9 0.0 1 1 5.8e-06 0.00014 12.4 0.0 16 42 161 187 153 217 0.85 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_43 - 604 T4SS-DNA_transf PF02534.9 469 2.8e-107 351.0 0.1 1 1 8.5e-109 4.2e-107 350.4 0.1 2 461 93 565 82 571 0.84 # 38416 # 40227 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_34 - 640 GTP_EFTU PF00009.22 188 1.1e-59 192.9 0.4 1 1 3.2e-61 1.6e-59 192.4 0.4 2 185 2 237 1 240 0.92 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_44 - 331 RNA_helicase PF00910.17 107 0.0001 14.4 0.0 1 1 5.8e-06 0.00029 13.0 0.0 1 23 163 185 163 224 0.79 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 UPF0079 PF02367.12 123 1.4e-05 16.7 0.0 1 1 5.3e-07 2.6e-05 15.8 0.0 8 42 153 187 147 205 0.85 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_34 - 640 EFG_IV PF03764.13 120 6.2e-26 82.3 0.0 1 1 3.5e-27 1.7e-25 80.8 0.0 1 120 416 532 416 532 0.98 # 29272 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_44 - 331 AAA_24 PF13479.1 213 0.00013 13.5 0.0 1 1 4.9e-06 0.00024 12.6 0.0 5 33 162 188 159 217 0.84 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_44 - 331 NACHT PF05729.7 166 1.7e-05 16.4 0.0 1 1 5.9e-07 2.9e-05 15.7 0.0 3 22 163 182 161 188 0.89 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_11 - 598 AAA_25 PF13481.1 194 4.1e-21 67.1 0.0 1 1 3.2e-22 7.8e-21 66.2 0.0 30 193 30 175 22 176 0.90 # 7611 # 9404 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.270 1_44 - 331 AAA_25 PF13481.1 194 0.00013 13.3 0.0 1 1 7.7e-06 0.00019 12.8 0.0 26 56 154 183 128 200 0.76 # 40228 # 41220 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_25 - 1932 SNF2_N PF00176.18 299 4.9e-21 66.6 5.2 1 3 1.7e-22 8.4e-21 65.8 0.4 24 204 1014 1274 954 1335 0.76 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_25 - 1932 SNF2_N PF00176.18 299 4.9e-21 66.6 5.2 2 3 0.0096 0.47 1.0 0.1 194 286 1461 1557 1444 1566 0.73 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_25 - 1932 SNF2_N PF00176.18 299 4.9e-21 66.6 5.2 3 3 0.043 2.1 -1.1 0.1 123 151 1872 1901 1835 1924 0.70 # 17791 # 23586 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9e5ec466-f8e6-49f6-92c4-1bc57ffa1a91 # Target file: checkm_output/bins/pMUJW01000047.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pMUJW01000047.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9e5ec466-f8e6-49f6-92c4-1bc57ffa1a91 checkm_output/bins/pMUJW01000047.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:46 2020 # [ok]