# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 229 Thymidylate_kin PF02223.12 186 3.1e-06 17.8 0.0 1 3 1.3e-06 3.5e-05 14.3 0.0 6 45 11 52 10 62 0.84 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 Thymidylate_kin PF02223.12 186 3.1e-06 17.8 0.0 2 3 0.037 1 -0.2 0.0 61 97 150 184 128 203 0.74 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 Thymidylate_kin PF02223.12 186 3.1e-06 17.8 0.0 3 3 0.03 0.83 0.1 0.1 122 169 175 225 155 227 0.59 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 MipZ PF09140.6 261 1e-17 55.1 0.9 1 3 1.3e-11 3.7e-10 30.3 0.0 2 51 2 50 1 57 0.85 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 MipZ PF09140.6 261 1e-17 55.1 0.9 2 3 1.1e-08 3.1e-07 20.8 0.0 82 140 63 121 47 130 0.86 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 MipZ PF09140.6 261 1e-17 55.1 0.9 3 3 0.008 0.22 1.6 0.0 128 177 132 181 126 203 0.82 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 YhjQ PF06564.7 244 8.4e-06 16.3 0.0 1 1 5.8e-07 1.6e-05 15.4 0.0 10 41 9 40 1 53 0.89 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_22 PF13401.1 131 1.4e-05 16.3 0.0 1 1 1.8e-06 5e-05 14.6 0.0 14 73 11 63 8 145 0.79 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 SRP54 PF00448.17 196 1.3e-09 28.8 0.0 1 1 1e-10 2.8e-09 27.8 0.0 11 99 11 95 2 140 0.79 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_17 PF13207.1 121 2.3e-05 16.3 0.1 1 1 2.3e-06 6.4e-05 14.9 0.1 9 32 11 39 10 195 0.81 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 MobB PF03205.9 140 0.00017 12.5 0.0 1 1 1.2e-05 0.00034 11.4 0.0 3 35 3 35 1 45 0.78 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 ArsA_ATPase PF02374.10 305 1.7e-10 31.4 0.4 1 2 1.5e-11 4.2e-10 30.2 0.2 5 109 5 110 1 130 0.67 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 ArsA_ATPase PF02374.10 305 1.7e-10 31.4 0.4 2 2 0.022 0.61 0.1 0.1 126 134 79 87 67 180 0.64 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 T2SE PF00437.15 272 6e-06 16.4 0.0 1 1 3.1e-07 8.7e-06 15.8 0.0 133 261 6 139 2 147 0.82 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 Zeta_toxin PF06414.7 201 1.2e-05 15.5 0.0 1 1 8.3e-07 2.3e-05 14.6 0.0 25 113 10 99 5 193 0.76 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 VirC1 PF07015.6 231 4.3e-10 30.1 0.1 1 1 3.7e-11 1e-09 28.9 0.1 4 127 3 126 1 196 0.69 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 Fer4_NifH PF00142.13 273 5.9e-07 20.0 0.0 1 1 4.9e-08 1.4e-06 18.8 0.0 7 42 8 43 2 94 0.80 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_16 PF13191.1 185 6.6e-05 14.0 0.0 1 1 3.7e-06 0.0001 13.4 0.0 34 80 11 64 9 156 0.71 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_18 PF13238.1 129 2e-07 22.5 0.3 1 2 3.6e-08 1e-06 20.3 0.1 8 122 11 169 9 175 0.75 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_18 PF13238.1 129 2e-07 22.5 0.3 2 2 0.018 0.5 1.8 0.2 14 36 151 181 126 227 0.60 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 CbiA PF01656.18 195 5.2e-26 82.3 0.2 1 1 8.8e-27 1.2e-25 81.1 0.2 1 171 3 156 3 189 0.74 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_11 - 160 CbiA PF01656.18 195 0.00022 11.8 0.0 1 1 1.9e-05 0.00027 11.5 0.0 107 171 38 100 10 129 0.69 # 13651 # 14130 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 1_6 - 229 AAA_31 PF13614.1 157 4.5e-13 40.5 0.3 1 3 2.4e-11 6.7e-10 30.2 0.0 2 47 2 47 1 67 0.83 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_31 PF13614.1 157 4.5e-13 40.5 0.3 2 3 0.00033 0.0092 7.0 0.0 111 149 73 110 63 118 0.73 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_31 PF13614.1 157 4.5e-13 40.5 0.3 3 3 0.063 1.8 -0.4 0.1 36 63 143 184 125 225 0.48 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_33 PF13671.1 143 0.00022 12.2 0.0 1 1 1.6e-05 0.00046 11.2 0.0 9 86 11 96 9 103 0.64 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 112 RNA_pol_Rpb1_3 PF04983.13 158 0.00013 12.9 0.1 1 1 7.6e-06 0.00021 12.1 0.1 12 45 41 80 38 109 0.80 # 22150 # 22485 # -1 # ID=1_28;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_27 - 170 THF_DHG_CYH_C PF02882.14 161 6.8e-05 13.1 0.4 1 2 0.00012 0.0033 7.6 0.1 19 59 16 56 1 61 0.82 # 21623 # 22132 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_27 - 170 THF_DHG_CYH_C PF02882.14 161 6.8e-05 13.1 0.4 2 2 0.0013 0.038 4.2 0.1 92 115 65 88 57 99 0.84 # 21623 # 22132 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304 1_6 - 229 AAA_19 PF13245.1 76 1e-05 16.4 0.0 1 1 1.2e-06 3.4e-05 14.7 0.0 20 48 11 35 3 49 0.86 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_10 PF12846.2 304 4.6e-05 14.0 0.0 1 1 3e-06 8.5e-05 13.1 0.0 11 139 11 166 9 226 0.55 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 DUF2075 PF09848.4 352 1.8e-05 14.9 0.1 1 1 1.1e-06 3.2e-05 14.1 0.0 5 90 5 86 2 135 0.83 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 NAD_binding_5 PF07994.7 295 0.00018 12.1 0.0 1 1 8.7e-06 0.00024 11.7 0.0 127 194 151 217 111 226 0.86 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_24 PF13479.1 213 1e-05 16.3 0.1 1 1 6.9e-07 1.9e-05 15.4 0.1 11 79 9 90 4 102 0.73 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 AAA_25 PF13481.1 194 2.7e-05 14.7 0.1 1 1 2.9e-06 8.1e-05 13.2 0.0 42 67 10 37 4 87 0.86 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 229 APS_kinase PF01583.15 157 2.2e-05 15.3 0.0 1 1 2.9e-06 8.2e-05 13.4 0.0 11 42 10 41 2 53 0.90 # 7611 # 8297 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fcc7dfe9-fce9-4b8a-a87c-cd643bbc49c1 # Target file: checkm_output/bins/pLVWL01000009.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pLVWL01000009.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fcc7dfe9-fce9-4b8a-a87c-cd643bbc49c1 checkm_output/bins/pLVWL01000009.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:37 2020 # [ok]