# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 138 cobW PF02492.14 178 0.00057 11.4 0.0 1 1 1.3e-05 0.00067 11.1 0.0 2 36 6 40 5 63 0.77 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_33 - 598 IstB_IS21 PF01695.12 178 2.5e-06 19.0 0.0 1 2 2.1e-06 5.7e-05 14.6 0.0 46 85 32 71 27 92 0.86 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_33 - 598 IstB_IS21 PF01695.12 178 2.5e-06 19.0 0.0 2 2 0.026 0.69 1.3 0.0 98 140 110 160 98 187 0.71 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_3 - 138 IstB_IS21 PF01695.12 178 0.00012 13.5 0.0 1 1 6.1e-06 0.00016 13.1 0.0 45 70 2 27 1 41 0.87 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_7 - 640 AIG1 PF04548.11 212 0.00013 13.1 0.0 1 1 6.1e-06 0.00032 11.8 0.0 32 62 51 81 43 109 0.83 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_25 - 141 SSB PF00436.20 104 2.2e-28 90.2 0.1 1 1 5.3e-30 2.8e-28 89.9 0.1 1 102 1 102 1 104 0.98 # 22748 # 23170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_17 - 336 DUF87 PF01935.12 229 5e-05 15.2 0.0 1 1 1.7e-06 9.3e-05 14.3 0.0 27 48 164 185 142 193 0.84 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 NB-ARC PF00931.17 287 1.8e-05 15.6 0.0 1 1 4.6e-07 2.5e-05 15.2 0.0 20 47 5 32 1 48 0.86 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 Septin PF00735.13 281 3.9e-05 14.7 0.0 1 1 2.4e-06 6.3e-05 14.0 0.0 6 29 162 185 158 209 0.80 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_7 - 640 Septin PF00735.13 281 0.00015 12.8 0.1 1 1 9.9e-06 0.00026 12.0 0.1 7 77 6 82 3 90 0.68 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_3 - 138 AAA_22 PF13401.1 131 6.2e-08 24.9 0.0 1 1 3.8e-09 1e-07 24.2 0.0 3 47 3 48 1 81 0.78 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_22 PF13401.1 131 9.5e-06 17.8 0.0 1 1 7.8e-07 2.1e-05 16.7 0.0 4 41 160 208 156 259 0.71 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_17 - 336 ATP_bind_1 PF03029.12 238 0.00012 13.6 0.0 1 1 3.8e-06 0.0002 12.9 0.0 1 23 165 187 165 193 0.87 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 SRP54 PF00448.17 196 4.1e-05 15.1 0.0 1 1 1.3e-06 6.6e-05 14.4 0.0 3 40 6 42 4 45 0.80 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 AAA_3 PF07726.6 131 0.0004 12.0 0.0 1 1 1.1e-05 0.00056 11.6 0.0 2 33 7 38 6 48 0.83 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 AAA_17 PF13207.1 121 2.4e-11 36.5 0.0 1 1 1e-12 2.7e-11 36.4 0.0 1 77 6 71 6 122 0.69 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_17 PF13207.1 121 4.7e-06 19.5 0.1 1 1 4.6e-07 1.2e-05 18.1 0.1 2 49 163 207 162 302 0.82 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_41 - 94 AAA_21 PF13304.1 303 0.0025 9.7 10.7 1 1 5.6e-05 0.0029 9.5 10.7 80 162 6 88 2 92 0.93 # 34349 # 34630 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.202 1_7 - 640 Miro PF08477.8 119 3.2e-06 19.7 0.0 1 1 2.6e-07 7e-06 18.6 0.0 9 119 13 131 5 131 0.75 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_3 - 138 Miro PF08477.8 119 7.3e-05 15.3 0.0 1 1 4.3e-06 0.00011 14.7 0.0 2 33 7 38 6 60 0.83 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 MobB PF03205.9 140 2.2e-05 16.2 0.4 1 1 4.6e-06 0.00012 13.8 0.0 3 27 163 187 161 199 0.81 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 MobB PF03205.9 140 0.0003 12.5 0.1 1 1 1.7e-05 0.00046 11.9 0.1 2 30 6 31 5 42 0.76 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_45 - 1932 Helicase_C PF00271.26 78 1.4e-07 23.4 0.3 1 2 0.055 2.9 -0.1 0.0 14 40 1078 1104 1064 1106 0.84 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_45 - 1932 Helicase_C PF00271.26 78 1.4e-07 23.4 0.3 2 2 4.2e-08 2.2e-06 19.5 0.0 12 78 1515 1583 1508 1583 0.86 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_3 - 138 PhoH PF02562.11 205 0.00012 13.4 0.4 1 2 4.9e-06 0.00026 12.2 0.1 18 46 3 31 1 36 0.81 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 PhoH PF02562.11 205 0.00012 13.4 0.4 2 2 0.089 4.7 -1.7 0.0 189 200 85 96 72 99 0.75 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 T2SE PF00437.15 272 6.7e-64 207.3 0.0 1 1 2.9e-65 7.7e-64 207.1 0.0 6 269 14 312 9 315 0.95 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 T2SE PF00437.15 272 2.5e-05 15.2 0.0 1 1 1.1e-06 3e-05 15.0 0.0 129 155 5 31 1 55 0.79 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 Zeta_toxin PF06414.7 201 5.9e-09 27.3 0.0 1 1 2.6e-10 6.9e-09 27.0 0.0 17 58 5 52 2 82 0.87 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 Zeta_toxin PF06414.7 201 6.9e-05 14.0 0.0 1 1 4.3e-06 0.00011 13.3 0.0 17 49 161 194 147 218 0.85 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 Arch_ATPase PF01637.13 234 0.00024 12.8 0.0 1 1 5.1e-06 0.00027 12.7 0.0 20 70 4 59 1 124 0.81 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 AAA_16 PF13191.1 185 7.6e-07 21.3 0.0 1 1 5.6e-08 1.5e-06 20.3 0.0 23 64 3 45 2 67 0.79 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_16 PF13191.1 185 2.8e-05 16.2 0.0 1 1 1.4e-06 3.7e-05 15.8 0.0 24 81 160 234 147 306 0.76 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 AAA_23 PF13476.1 202 0.00077 11.8 1.0 1 1 4.6e-05 0.0012 11.2 0.6 21 38 6 23 2 25 0.88 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_23 PF13476.1 202 0.00098 11.5 5.1 1 1 1.9e-05 0.00051 12.4 2.1 22 37 163 178 141 185 0.89 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 AAA_18 PF13238.1 129 1.3e-08 27.3 0.0 1 1 8.7e-10 1.5e-08 27.0 0.0 1 59 7 55 7 104 0.72 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_6 - 153 AAA_18 PF13238.1 129 1.3e-07 24.0 0.0 1 1 1.1e-08 1.9e-07 23.5 0.0 47 123 27 106 4 115 0.77 # 3998 # 4456 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_17 - 336 AAA_18 PF13238.1 129 6.9e-05 15.2 0.1 1 1 1.5e-05 0.00027 13.3 0.0 1 18 163 180 163 227 0.76 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_47 - 187 CbiA PF01656.18 195 1.9e-08 25.9 0.1 1 2 6.4e-07 3.4e-05 15.3 0.0 1 24 3 26 3 32 0.92 # 44040 # 44600 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_47 - 187 CbiA PF01656.18 195 1.9e-08 25.9 0.1 2 2 5.1e-05 0.0027 9.1 0.0 95 178 54 131 29 151 0.68 # 44040 # 44600 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 138 KaiC PF06745.8 227 2.1e-05 15.7 0.1 1 1 1.2e-06 3.2e-05 15.1 0.1 18 38 3 23 1 38 0.86 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_33 - 598 KaiC PF06745.8 227 2.1e-05 15.7 0.0 1 1 3.8e-06 0.0001 13.5 0.0 16 71 30 84 23 214 0.85 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_3 - 138 AAA_14 PF13173.1 128 4e-07 22.0 0.0 1 1 1.7e-08 4.4e-07 21.9 0.0 2 50 4 54 3 130 0.67 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_14 PF13173.1 128 9.4e-06 17.6 0.1 1 2 0.056 1.5 0.8 0.0 70 102 35 66 11 74 0.85 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_17 - 336 AAA_14 PF13173.1 128 9.4e-06 17.6 0.1 2 2 4.6e-06 0.00012 14.0 0.0 2 54 160 211 159 254 0.75 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_17 - 336 GvpD PF07088.6 484 0.00026 11.3 0.0 1 1 1.3e-05 0.00034 10.9 0.0 8 42 158 192 150 258 0.83 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 GvpD PF07088.6 484 0.00049 10.4 0.5 1 1 3e-05 0.00079 9.7 0.4 9 26 3 20 1 42 0.87 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_7 - 640 TIGR03594 TIGR03594 432 1.5e-08 25.7 0.3 1 3 0.031 1.6 -0.8 0.0 176 211 4 42 2 59 0.74 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_7 - 640 TIGR03594 TIGR03594 432 1.5e-08 25.7 0.3 2 3 9.8e-09 5.2e-07 20.6 0.1 31 123 51 135 48 155 0.86 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_7 - 640 TIGR03594 TIGR03594 432 1.5e-08 25.7 0.3 3 3 0.006 0.32 1.5 0.0 304 347 196 239 187 265 0.79 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_17 - 336 AAA_29 PF13555.1 62 2.1e-05 16.0 0.0 1 1 1.9e-06 5e-05 14.9 0.0 22 40 159 177 140 184 0.81 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 AAA_29 PF13555.1 62 0.00043 11.9 0.2 1 1 3.1e-05 0.00083 10.9 0.2 22 43 3 24 1 26 0.85 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 AAA PF00004.24 132 5.7e-08 25.1 0.0 1 1 2.8e-09 7.5e-08 24.7 0.0 2 25 8 31 7 99 0.71 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_33 - 598 AAA PF00004.24 132 5.7e-05 15.4 0.2 1 2 5e-05 0.0013 10.9 0.0 2 105 37 166 36 177 0.66 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_33 - 598 AAA PF00004.24 132 5.7e-05 15.4 0.2 2 2 0.05 1.3 1.2 0.0 47 74 411 434 377 459 0.70 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_17 - 336 Sigma54_activat PF00158.21 168 7.8e-05 14.2 0.0 1 1 6.4e-06 0.00017 13.1 0.0 14 43 152 181 143 198 0.84 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 Sigma54_activat PF00158.21 168 0.00058 11.4 0.0 1 1 3.1e-05 0.00083 10.9 0.0 25 51 7 33 1 40 0.84 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_7 - 640 MMR_HSR1 PF01926.18 116 1.2e-08 26.9 0.1 1 1 4.4e-10 2.3e-08 26.0 0.1 4 116 8 129 5 129 0.68 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_16 - 604 TraG-D_C PF12696.2 128 1.5e-27 88.1 0.0 1 1 1.1e-28 5.6e-27 86.2 0.0 2 127 406 528 405 529 0.88 # 14791 # 16602 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 138 NTPase_1 PF03266.10 168 6e-06 18.1 0.0 1 1 3.8e-07 1e-05 17.3 0.0 2 42 7 50 6 59 0.74 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 NTPase_1 PF03266.10 168 0.00035 12.3 0.1 1 1 2.7e-05 0.00072 11.3 0.1 1 23 162 184 162 192 0.88 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 AAA_33 PF13671.1 143 8.4e-08 24.2 0.0 1 1 3.8e-09 1e-07 23.9 0.0 2 77 7 83 6 98 0.84 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_6 - 153 AAA_33 PF13671.1 143 3.8e-07 22.1 0.0 1 1 2e-08 5.3e-07 21.6 0.0 46 129 26 108 3 117 0.76 # 3998 # 4456 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_3 - 138 KTI12 PF08433.5 270 2.1e-06 19.1 0.0 1 1 5.7e-08 3e-06 18.6 0.0 3 42 6 44 5 62 0.80 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_33 - 598 DnaB_C PF03796.10 259 2.8e-06 18.4 0.0 1 2 2.1e-07 1.1e-05 16.3 0.0 13 117 27 136 23 156 0.79 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_33 - 598 DnaB_C PF03796.10 259 2.8e-06 18.4 0.0 2 2 0.011 0.59 0.9 0.0 129 185 119 177 101 179 0.77 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_45 - 1932 Methyltransf_26 PF13659.1 117 2.9e-13 41.9 0.0 1 1 1.7e-14 9.1e-13 40.3 0.0 3 116 311 421 309 422 0.84 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_3 - 138 AAA_30 PF13604.1 196 1e-05 17.2 0.2 1 1 4.9e-07 1.3e-05 16.8 0.2 17 40 3 26 1 38 0.86 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_30 PF13604.1 196 0.00074 11.1 0.0 1 1 4.3e-05 0.0011 10.5 0.0 12 44 155 186 146 193 0.72 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_17 - 336 FtsK_SpoIIIE PF01580.13 205 5.9e-08 24.4 0.0 1 1 1.9e-09 9.9e-08 23.7 0.0 36 59 154 181 134 187 0.77 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_45 - 1932 MTS PF05175.9 170 2.5e-05 15.7 0.0 1 1 1.4e-06 7.4e-05 14.2 0.0 32 142 309 422 301 442 0.75 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_53 - 262 VirE PF05272.6 198 0.00033 12.1 0.1 1 1 1.1e-05 0.00057 11.4 0.1 44 117 136 211 110 212 0.81 # 47247 # 48032 # -1 # ID=1_53;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 1_17 - 336 ABC_tran PF00005.22 137 2.2e-07 23.3 0.0 1 1 1.7e-08 4.4e-07 22.3 0.0 5 50 154 200 152 226 0.84 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 ABC_tran PF00005.22 137 4.5e-06 19.0 0.0 1 1 2.4e-07 6.4e-06 18.5 0.0 9 51 2 43 1 70 0.82 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 TIGR03263 TIGR03263 180 6.4e-05 14.3 0.0 1 1 2.1e-06 0.00011 13.6 0.0 1 36 4 38 4 49 0.88 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 ATP-synt_ab PF00006.20 215 0.00017 13.1 0.0 1 1 3.4e-06 0.00018 13.0 0.0 14 43 3 32 1 109 0.79 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_45 - 1932 Eco57I PF07669.6 106 1.3e-08 27.2 2.3 1 1 6.8e-10 3.6e-08 25.8 0.3 3 104 371 472 369 474 0.84 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_3 - 138 RuvB_N PF05496.7 234 0.00014 12.9 0.0 1 1 4e-06 0.00021 12.4 0.0 53 76 7 30 3 39 0.85 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 AAA_19 PF13245.1 76 3.8e-08 25.1 0.2 1 1 1e-09 5.6e-08 24.5 0.2 10 31 4 25 1 32 0.85 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_28 - 923 AAA_10 PF12846.2 304 4.3e-38 123.4 1.5 1 2 0.092 1.6 -0.0 0.0 126 161 221 283 153 335 0.76 # 24320 # 27088 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_28 - 923 AAA_10 PF12846.2 304 4.3e-38 123.4 1.5 2 2 7.4e-39 1.3e-37 121.8 0.4 2 301 546 843 545 845 0.83 # 24320 # 27088 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_17 - 336 AAA_10 PF12846.2 304 2.6e-06 19.0 0.0 1 1 1.8e-07 3.2e-06 18.7 0.0 2 37 161 196 160 333 0.74 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_16 - 604 AAA_10 PF12846.2 304 9.9e-05 13.8 0.0 1 1 9.6e-06 0.00017 13.1 0.0 32 302 154 490 127 491 0.75 # 14791 # 16602 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_45 - 1932 ResIII PF04851.10 184 2.2e-10 32.6 9.8 1 1 8.4e-12 2.2e-10 32.6 9.8 2 161 999 1195 998 1242 0.61 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_17 - 336 ResIII PF04851.10 184 3.8e-05 15.6 0.0 1 1 2.8e-06 7.5e-05 14.6 0.0 3 64 145 201 143 237 0.72 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_7 - 640 GTP_EFTU_D2 PF03144.20 74 3.4e-09 28.8 0.0 1 1 1.3e-10 7.1e-09 27.8 0.0 3 60 265 316 263 323 0.90 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_3 - 138 Viral_helicase1 PF01443.13 234 9e-05 14.0 0.0 1 1 2.2e-06 0.00012 13.7 0.0 1 38 7 40 7 61 0.73 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 DUF2075 PF09848.4 352 1.7e-06 19.2 0.0 1 1 4e-08 2.1e-06 18.8 0.0 2 26 5 31 4 54 0.80 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 TIP49 PF06068.8 398 6.4e-06 17.0 0.0 1 1 1.6e-07 8.7e-06 16.6 0.0 50 95 4 48 1 52 0.80 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_45 - 1932 DEAD PF00270.24 169 1.6e-08 26.2 0.7 1 3 9.4e-08 2.5e-06 19.1 0.0 2 106 1003 1108 1002 1113 0.80 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_45 - 1932 DEAD PF00270.24 169 1.6e-08 26.2 0.7 2 3 0.015 0.4 2.1 0.1 114 133 1172 1194 1158 1244 0.75 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_45 - 1932 DEAD PF00270.24 169 1.6e-08 26.2 0.7 3 3 0.073 1.9 -0.1 0.0 120 150 1885 1917 1844 1924 0.73 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_17 - 336 DEAD PF00270.24 169 2.9e-06 18.9 0.0 1 1 1.9e-07 5e-06 18.1 0.0 2 69 148 212 147 243 0.71 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_16 - 604 TrwB_AAD_bind PF10412.4 386 1.4e-20 65.1 0.0 1 2 2.5e-06 6.6e-05 13.6 0.0 39 150 147 270 124 297 0.71 # 14791 # 16602 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_16 - 604 TrwB_AAD_bind PF10412.4 386 1.4e-20 65.1 0.0 2 2 3e-17 7.8e-16 49.6 0.0 185 380 345 542 306 544 0.84 # 14791 # 16602 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_17 - 336 TrwB_AAD_bind PF10412.4 386 0.0001 13.0 0.0 1 1 6.1e-06 0.00016 12.3 0.0 16 42 161 187 154 217 0.85 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 AAA_11 PF13086.1 236 2.9e-05 15.7 0.0 1 1 5.5e-07 2.9e-05 15.7 0.0 17 41 4 28 1 113 0.79 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_6 - 153 CPT PF07931.7 174 2.8e-08 25.6 0.0 1 1 1.3e-09 3.4e-08 25.3 0.0 59 172 26 143 5 145 0.81 # 3998 # 4456 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_3 - 138 CPT PF07931.7 174 9.7e-05 14.0 0.0 1 1 5.4e-06 0.00014 13.5 0.0 1 40 4 44 4 75 0.85 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_16 - 604 T4SS-DNA_transf PF02534.9 469 2.5e-106 348.0 0.1 1 1 6.4e-108 3.4e-106 347.5 0.1 3 460 94 563 82 571 0.88 # 14791 # 16602 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 138 ArgK PF03308.11 267 0.00032 11.5 0.1 1 1 8.9e-06 0.00047 10.9 0.1 30 52 5 27 2 34 0.86 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_7 - 640 GTP_EFTU PF00009.22 188 2.2e-59 192.0 0.4 1 1 6.1e-61 3.2e-59 191.5 0.4 2 185 2 237 1 240 0.92 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_3 - 138 RNA_helicase PF00910.17 107 5.8e-05 15.3 0.0 1 1 3.6e-06 9.5e-05 14.6 0.0 1 36 7 43 7 74 0.67 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 RNA_helicase PF00910.17 107 0.00013 14.1 0.0 1 1 1.2e-05 0.00032 12.9 0.0 1 23 163 185 163 224 0.79 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_17 - 336 UPF0079 PF02367.12 123 1.7e-05 16.5 0.0 1 1 1.2e-06 3.2e-05 15.6 0.0 8 42 153 187 147 205 0.85 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 UPF0079 PF02367.12 123 0.00045 11.9 0.0 1 1 2.6e-05 0.0007 11.3 0.0 13 46 2 35 1 52 0.86 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_7 - 640 EFG_IV PF03764.13 120 4.9e-26 82.7 0.0 1 1 3.5e-27 1.9e-25 80.8 0.0 1 120 416 532 416 532 0.98 # 5190 # 7109 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.407 1_3 - 138 AAA_24 PF13479.1 213 9.6e-05 14.0 0.0 1 1 4.2e-06 0.00011 13.8 0.0 5 24 6 25 2 70 0.84 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_24 PF13479.1 213 0.00012 13.7 0.0 1 1 1e-05 0.00026 12.6 0.0 5 33 162 188 159 217 0.84 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_17 - 336 NACHT PF05729.7 166 1.9e-05 16.4 0.0 1 1 1.2e-06 3.2e-05 15.6 0.0 3 22 163 182 161 188 0.89 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 NACHT PF05729.7 166 0.0001 14.0 0.1 1 1 8.8e-06 0.00023 12.8 0.1 1 26 5 30 5 100 0.84 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_33 - 598 AAA_25 PF13481.1 194 6.3e-22 69.9 0.0 1 1 6.8e-23 1.2e-21 69.0 0.0 30 193 30 175 20 176 0.90 # 28996 # 30789 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_3 - 138 AAA_25 PF13481.1 194 1.8e-05 16.2 0.0 1 1 1.3e-06 2.4e-05 15.8 0.0 32 55 3 26 1 43 0.88 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_17 - 336 AAA_25 PF13481.1 194 0.00014 13.3 0.0 1 1 1.2e-05 0.00022 12.7 0.0 29 56 157 183 130 200 0.76 # 16603 # 17610 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 1_3 - 138 IPT PF01745.11 233 0.00043 11.5 0.2 1 1 1.2e-05 0.00063 10.9 0.2 3 25 6 28 4 34 0.89 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_45 - 1932 SNF2_N PF00176.18 299 5.1e-21 66.7 4.5 1 3 1.8e-22 9.4e-21 65.8 0.4 24 204 1014 1274 954 1335 0.76 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_45 - 1932 SNF2_N PF00176.18 299 5.1e-21 66.7 4.5 2 3 0.011 0.57 0.8 0.1 194 286 1461 1557 1443 1566 0.73 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_45 - 1932 SNF2_N PF00176.18 299 5.1e-21 66.7 4.5 3 3 0.084 4.4 -2.1 0.0 123 150 1872 1900 1837 1909 0.75 # 37929 # 43724 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.298 1_3 - 138 AAA_28 PF13521.1 163 5.7e-08 24.9 0.0 1 1 1.4e-09 7.3e-08 24.5 0.0 2 23 7 33 6 76 0.72 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_3 - 138 APS_kinase PF01583.15 157 0.00034 12.3 0.0 1 1 9.7e-06 0.00051 11.7 0.0 1 26 3 28 3 49 0.82 # 2047 # 2460 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d69b77af-bb9c-4367-976d-baf6bc7f8c8e # Target file: checkm_output/bins/pKX686749.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pKX686749.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d69b77af-bb9c-4367-976d-baf6bc7f8c8e checkm_output/bins/pKX686749.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:34 2020 # [ok]