# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 313 3HCDH_N PF02737.13 180 6.1e-06 15.5 0.1 1 1 1.7e-06 1.5e-05 14.2 0.1 1 40 2 41 2 64 0.87 # 9765 # 10703 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_5 - 588 Pyr_redox_2 PF07992.9 201 3.9e-05 13.1 0.1 1 1 1.8e-05 0.00017 11.0 0.0 4 32 27 59 24 95 0.89 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 NAD_binding_8 PF13450.1 68 1.1e-10 31.0 0.1 1 1 2.5e-11 2.3e-10 30.0 0.1 1 63 27 92 27 97 0.70 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_7 - 313 F420_oxidored PF03807.12 96 8.4e-06 15.8 0.1 1 1 6.2e-06 5.6e-05 13.1 0.1 1 88 2 97 2 104 0.84 # 9765 # 10703 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_5 - 588 FAD_binding_3 PF01494.14 356 0.00013 10.5 0.5 1 1 2.5e-05 0.00022 9.8 0.5 5 24 26 45 22 49 0.90 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 FAD_binding_2 PF00890.19 417 9.4e-06 14.1 0.0 1 2 6.2e-05 0.00055 8.2 0.1 4 22 27 45 25 59 0.90 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 FAD_binding_2 PF00890.19 417 9.4e-06 14.1 0.0 2 2 0.0017 0.015 3.5 0.0 135 193 220 279 201 314 0.69 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 Strep_67kDa_ant PF06100.6 500 4.7e-252 826.1 1.8 1 1 6e-253 5.4e-252 825.9 1.8 1 500 21 518 21 518 0.99 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 Pyr_redox_3 PF13738.1 203 1.4e-05 14.7 2.0 1 3 2.9e-05 0.00026 10.5 0.2 2 37 27 65 26 83 0.88 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 Pyr_redox_3 PF13738.1 203 1.4e-05 14.7 2.0 2 3 0.033 0.3 0.6 0.0 83 135 227 286 177 303 0.67 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 Pyr_redox_3 PF13738.1 203 1.4e-05 14.7 2.0 3 3 0.028 0.25 0.8 0.0 31 103 306 374 299 431 0.67 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_7 - 313 NAD_binding_2 PF03446.10 163 4e-07 19.5 0.5 1 1 9.8e-08 8.8e-07 18.4 0.1 2 62 1 61 1 100 0.82 # 9765 # 10703 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_7 - 313 NAD_Gly3P_dh_N PF01210.18 157 3.4e-11 32.6 0.1 1 1 6.3e-12 5.7e-11 31.9 0.1 1 118 2 113 2 141 0.83 # 9765 # 10703 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_7 - 313 ApbA PF02558.11 151 3.4e-43 136.2 0.2 1 1 5.8e-44 5.2e-43 135.6 0.2 1 148 3 151 3 153 0.98 # 9765 # 10703 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_7 - 313 UDPG_MGDP_dh_N PF03721.9 185 4.8e-08 22.1 0.1 1 1 8.4e-09 7.6e-08 21.4 0.1 1 100 1 94 1 115 0.79 # 9765 # 10703 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_5 - 588 DAO PF01266.19 358 2.9e-07 19.1 0.0 1 2 1.9e-07 1.7e-06 16.5 0.0 4 48 27 79 24 145 0.74 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 DAO PF01266.19 358 2.9e-07 19.1 0.0 2 2 0.019 0.18 0.1 0.0 150 188 229 271 221 300 0.67 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 NAD_binding_9 PF13454.1 156 6.3e-05 12.3 0.1 1 1 1.7e-05 0.00015 11.1 0.1 2 37 27 62 26 72 0.86 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 Pyr_redox PF00070.22 80 4.3e-07 19.9 0.7 1 2 7.7e-05 0.0007 9.6 0.1 3 41 26 68 24 74 0.82 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 588 Pyr_redox PF00070.22 80 4.3e-07 19.9 0.7 2 2 0.00024 0.0022 8.0 0.1 46 73 232 263 223 271 0.77 # 4591 # 6354 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_7 - 313 TrkA_N PF02254.13 116 4.1e-06 16.4 0.4 1 1 1.4e-06 1.3e-05 14.7 0.1 1 44 3 46 3 55 0.90 # 9765 # 10703 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7f06e23c-fe79-4719-8c37-d3c8f9f7ad6b # Target file: checkm_output/bins/pHE650697.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pHE650697.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7f06e23c-fe79-4719-8c37-d3c8f9f7ad6b checkm_output/bins/pHE650697.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:31 2020 # [ok]