# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 673 DUF87 PF01935.12 229 9.4e-05 12.5 0.0 1 1 1.1e-05 0.00016 11.7 0.0 24 55 269 300 267 312 0.86 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 T2SE PF00437.15 272 1.9e-05 13.8 0.0 1 1 2.3e-06 3.4e-05 13.0 0.0 129 166 269 306 264 313 0.83 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 Zeta_toxin PF06414.7 201 0.00017 10.9 0.0 1 1 2.2e-05 0.00033 10.0 0.0 17 61 269 319 261 336 0.76 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 FtsK_SpoIIIE PF01580.13 205 1.9e-10 30.8 0.0 1 1 1e-10 1.6e-09 27.7 0.0 28 204 251 425 238 426 0.79 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 AAA_10 PF12846.2 304 3.9e-07 19.9 0.0 1 2 0.00049 0.0073 5.9 0.0 2 40 269 307 268 326 0.81 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 AAA_10 PF12846.2 304 3.9e-07 19.9 0.0 2 2 8e-06 0.00012 11.7 0.0 221 267 382 428 358 457 0.81 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 DUF853 PF05872.7 504 8.2e-05 11.2 0.0 1 1 8.5e-06 0.00013 10.6 0.0 21 58 268 306 263 309 0.87 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 TrwB_AAD_bind PF10412.4 386 1.6e-06 17.1 0.0 1 2 3.6e-07 5.3e-06 15.4 0.0 13 47 266 300 261 307 0.90 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_9 - 673 TrwB_AAD_bind PF10412.4 386 1.6e-06 17.1 0.0 2 2 0.077 1.1 -2.2 0.0 263 281 405 423 395 431 0.82 # 7754 # 9772 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0f83c8a8-7267-470d-bef7-ce78efabf26a # Target file: checkm_output/bins/pGU226194.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGU226194.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0f83c8a8-7267-470d-bef7-ce78efabf26a checkm_output/bins/pGU226194.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:25 2020 # [ok]