# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 50 RRM_5 PF13893.1 56 5e-05 12.9 0.0 1 1 5.4e-06 5.4e-05 12.7 0.0 27 48 20 41 8 47 0.85 # 3956 # 4105 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.380 1_9 - 75 TIGR00810 TIGR00810 73 0.056 3.0 17.6 1 2 3.7e-05 0.00037 10.0 4.9 2 24 4 26 3 35 0.89 # 6348 # 6572 # 1 # ID=1_9;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.249 1_9 - 75 TIGR00810 TIGR00810 73 0.056 3.0 17.6 2 2 0.046 0.46 0.1 3.3 50 67 44 61 39 66 0.79 # 6348 # 6572 # 1 # ID=1_9;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.249 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6a24fa6e-43ae-4330-9e57-ffdf0bc54205 # Target file: checkm_output/bins/pGU144016.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGU144016.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6a24fa6e-43ae-4330-9e57-ffdf0bc54205 checkm_output/bins/pGU144016.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:24 2020 # [ok]