# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_82 - 347 Terminase_6 PF03237.10 384 7.1e-14 44.5 0.0 1 1 6.9e-16 8.7e-14 44.2 0.0 101 350 18 294 16 324 0.83 # 56853 # 57893 # -1 # ID=1_82;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.690 1_31 - 219 MipZ PF09140.6 261 5.6e-06 18.8 2.0 1 2 4.6e-06 0.00058 12.2 0.7 2 25 49 72 48 77 0.85 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_31 - 219 MipZ PF09140.6 261 5.6e-06 18.8 2.0 2 2 0.00024 0.03 6.6 0.0 93 136 76 121 67 158 0.80 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_6 - 448 3HCDH_N PF02737.13 180 1.2e-05 18.3 0.0 1 1 2.3e-07 2.8e-05 17.0 0.0 2 40 5 43 4 89 0.70 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_18 - 178 SSB PF00436.20 104 8.6e-31 99.2 0.0 1 1 9.7e-33 1.2e-30 98.7 0.0 3 101 6 108 5 111 0.90 # 9196 # 9729 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_31 - 219 SRP54 PF00448.17 196 0.00019 14.2 0.2 1 2 0.0032 0.4 3.3 0.3 11 27 58 74 47 82 0.82 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_31 - 219 SRP54 PF00448.17 196 0.00019 14.2 0.2 2 2 3e-05 0.0038 9.9 0.0 75 114 75 112 69 127 0.80 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_31 - 219 ArsA_ATPase PF02374.10 305 0.00078 11.7 0.0 1 1 1.6e-05 0.0021 10.3 0.1 8 28 55 75 49 82 0.83 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_6 - 448 F420_oxidored PF03807.12 96 4.4e-07 23.6 0.4 1 3 6.1e-05 0.0077 10.0 0.1 1 71 4 93 4 98 0.84 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_6 - 448 F420_oxidored PF03807.12 96 4.4e-07 23.6 0.4 2 3 0.0056 0.71 3.7 0.0 17 79 164 234 159 245 0.73 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_6 - 448 F420_oxidored PF03807.12 96 4.4e-07 23.6 0.4 3 3 0.0016 0.21 5.4 0.0 21 77 356 406 346 422 0.73 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_31 - 219 Fer4_NifH PF00142.13 273 6.9e-06 18.6 0.0 1 2 0.00012 0.015 7.6 0.0 7 29 55 77 50 86 0.86 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_31 - 219 Fer4_NifH PF00142.13 273 6.9e-06 18.6 0.0 2 2 4.8e-05 0.0061 8.9 0.0 164 233 125 197 118 211 0.73 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_31 - 219 CbiA PF01656.18 195 3.5e-16 52.4 0.8 1 2 3.6e-10 4.5e-08 25.9 1.3 2 25 51 74 50 77 0.91 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_31 - 219 CbiA PF01656.18 195 3.5e-16 52.4 0.8 2 2 9.8e-10 1.2e-07 24.5 0.0 88 190 77 176 70 181 0.78 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_93 - 305 Rossmann-like PF10727.4 127 0.00012 15.0 0.5 1 1 2e-06 0.00026 14.0 0.5 39 93 223 279 219 291 0.86 # 66048 # 66962 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_6 - 448 NAD_binding_2 PF03446.10 163 1.2e-07 25.0 0.0 1 2 1.1e-08 1.4e-06 21.5 0.0 3 110 4 144 2 148 0.86 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_6 - 448 NAD_binding_2 PF03446.10 163 1.2e-07 25.0 0.0 2 2 0.059 7.5 -0.4 0.0 16 62 349 395 347 400 0.74 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_6 - 448 2-Hacid_dh_C PF02826.14 178 0.00049 12.5 0.0 1 1 1.5e-05 0.0018 10.6 0.0 38 75 4 41 2 60 0.76 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_90 - 677 FtsK_SpoIIIE PF01580.13 205 7.5e-11 35.1 0.0 1 1 1.2e-12 1.5e-10 34.1 0.0 37 204 261 401 233 402 0.89 # 63158 # 65188 # -1 # ID=1_90;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.712 1_6 - 448 UDPG_MGDP_dh_N PF03721.9 185 1.4e-55 180.8 0.0 1 1 1.7e-57 2.1e-55 180.2 0.0 2 185 4 192 3 192 0.95 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_90 - 677 AAA_10 PF12846.2 304 1.1e-05 18.2 0.1 1 2 0.00011 0.013 8.1 0.0 2 46 263 308 262 333 0.76 # 63158 # 65188 # -1 # ID=1_90;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.712 1_90 - 677 AAA_10 PF12846.2 304 1.1e-05 18.2 0.1 2 2 0.00019 0.024 7.2 0.0 214 267 340 404 323 431 0.71 # 63158 # 65188 # -1 # ID=1_90;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.712 1_31 - 219 PduV-EutP PF10662.4 143 0.00084 12.1 0.0 1 1 1.1e-05 0.0014 11.3 0.0 10 59 57 105 48 111 0.85 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_6 - 448 Pyr_redox PF00070.22 80 0.0012 12.5 2.0 1 1 5.3e-05 0.0066 10.1 0.7 1 25 4 28 4 76 0.86 # 3583 # 4926 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.728 1_18 - 178 tRNA_anti_2 PF13742.1 99 1.6e-05 18.0 0.0 1 1 2.3e-07 2.9e-05 17.2 0.0 48 82 53 86 39 108 0.84 # 9196 # 9729 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_18 - 178 tRNA_anti-codon PF01336.20 75 1.3e-06 21.4 0.1 1 1 2.3e-08 3e-06 20.3 0.1 29 72 57 108 48 110 0.79 # 9196 # 9729 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_31 - 219 AAA_25 PF13481.1 194 0.00045 12.9 0.1 1 1 1.3e-05 0.0016 11.1 0.1 42 59 57 74 50 96 0.80 # 16848 # 17504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ab26ac74-7e98-4a3a-b73c-efedaa6ca81d # Target file: checkm_output/bins/pGQ983381.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGQ983381.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ab26ac74-7e98-4a3a-b73c-efedaa6ca81d checkm_output/bins/pGQ983381.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:26 2020 # [ok]