# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_57 - 522 Terminase_6 PF03237.10 384 4.9e-20 64.8 0.0 1 1 4.6e-22 5.9e-20 64.5 0.0 4 382 93 497 90 499 0.87 # 34224 # 35789 # 1 # ID=1_57;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_109 - 220 MipZ PF09140.6 261 6e-06 18.7 2.1 1 2 5e-06 0.00064 12.1 1.2 2 25 50 73 49 82 0.82 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_109 - 220 MipZ PF09140.6 261 6e-06 18.7 2.1 2 2 0.00017 0.022 7.0 0.0 89 136 70 122 67 137 0.75 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_125 - 185 SSB PF00436.20 104 1.2e-28 92.4 0.0 1 1 1.3e-30 1.7e-28 91.8 0.0 4 101 7 107 5 110 0.91 # 89207 # 89761 # 1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.705 1_99 - 349 DNA_methylase PF00145.12 335 4.7e-29 94.7 0.0 1 3 2e-16 1.3e-14 47.3 0.0 3 83 2 80 1 89 0.93 # 72235 # 73281 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.709 1_99 - 349 DNA_methylase PF00145.12 335 4.7e-29 94.7 0.0 2 3 8.2e-08 5.2e-06 19.0 0.0 124 166 147 189 130 219 0.80 # 72235 # 73281 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.709 1_99 - 349 DNA_methylase PF00145.12 335 4.7e-29 94.7 0.0 3 3 1.2e-09 7.6e-08 25.0 0.0 288 330 289 331 270 335 0.92 # 72235 # 73281 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.709 1_98 - 369 DNA_methylase PF00145.12 335 1.3e-24 80.1 0.0 1 2 2.5e-05 0.0016 10.8 0.0 8 86 13 92 8 103 0.64 # 71132 # 72238 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.730 1_98 - 369 DNA_methylase PF00145.12 335 1.3e-24 80.1 0.0 2 2 8.6e-22 5.5e-20 64.9 0.0 82 331 115 351 109 354 0.71 # 71132 # 72238 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.730 1_109 - 220 SRP54 PF00448.17 196 0.00027 13.7 0.2 1 2 0.0045 0.58 2.8 0.2 11 26 59 74 49 81 0.86 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_109 - 220 SRP54 PF00448.17 196 0.00027 13.7 0.2 2 2 0.00012 0.015 7.9 0.0 83 114 82 113 73 124 0.88 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_109 - 220 ArsA_ATPase PF02374.10 305 0.00084 11.6 0.0 1 1 1.6e-05 0.0021 10.4 0.1 8 28 56 76 50 86 0.84 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_109 - 220 Fer4_NifH PF00142.13 273 0.00035 13.0 0.0 1 2 0.00019 0.024 7.0 0.1 7 29 56 78 51 86 0.87 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_109 - 220 Fer4_NifH PF00142.13 273 0.00035 13.0 0.0 2 2 0.0017 0.21 3.9 0.0 163 234 125 199 119 213 0.70 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_109 - 220 CbiA PF01656.18 195 7.4e-15 48.1 1.1 1 2 2.8e-10 3.6e-08 26.3 1.3 2 25 52 75 51 83 0.89 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_109 - 220 CbiA PF01656.18 195 7.4e-15 48.1 1.1 2 2 3.2e-08 4e-06 19.6 0.0 97 173 85 161 76 186 0.79 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_105 - 281 Cons_hypoth95 PF03602.10 183 0.00069 12.3 0.0 1 1 1.7e-05 0.0021 10.7 0.0 75 127 137 187 131 197 0.78 # 76293 # 77135 # 1 # ID=1_105;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 1_42 - 145 UBX PF00789.15 82 0.00082 12.7 0.0 1 2 4.7e-05 0.006 9.9 0.0 4 24 31 51 29 71 0.83 # 23631 # 24065 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.710 1_42 - 145 UBX PF00789.15 82 0.00082 12.7 0.0 2 2 0.04 5.1 0.6 0.0 48 69 110 129 91 136 0.61 # 23631 # 24065 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.710 1_125 - 185 tRNA_anti_2 PF13742.1 99 0.00014 14.9 0.0 1 1 1.7e-06 0.00022 14.4 0.0 52 83 56 86 46 109 0.81 # 89207 # 89761 # 1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.705 1_105 - 281 MethyltransfD12 PF02086.10 260 5.7e-27 88.0 0.0 1 1 5.4e-29 6.9e-27 87.7 0.0 1 243 10 233 10 246 0.84 # 76293 # 77135 # 1 # ID=1_105;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 1_125 - 185 tRNA_anti-codon PF01336.20 75 1.6e-06 21.2 0.0 1 1 2.5e-08 3.2e-06 20.2 0.0 29 72 56 107 51 109 0.83 # 89207 # 89761 # 1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.705 1_109 - 220 AAA_25 PF13481.1 194 0.00021 13.9 0.2 1 1 4.2e-06 0.00054 12.6 0.2 42 64 58 83 22 96 0.84 # 80147 # 80806 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.647 1_99 - 349 Methyltransf_15 PF09445.5 164 0.0016 11.2 0.0 1 1 1.8e-05 0.0023 10.8 0.0 3 37 1 35 1 55 0.89 # 72235 # 73281 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.709 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9417281a-f70a-40bd-aada-cad29683796c # Target file: checkm_output/bins/pGQ919031.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGQ919031.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9417281a-f70a-40bd-aada-cad29683796c checkm_output/bins/pGQ919031.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:25 2020 # [ok]