# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 96 IstB_IS21 PF01695.12 178 5.7e-05 14.0 0.1 1 1 1.7e-05 0.00028 11.7 0.1 56 80 12 36 4 91 0.90 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_31 - 211 IstB_IS21 PF01695.12 178 0.00022 12.1 0.1 1 1 8e-05 0.0014 9.5 0.1 56 80 12 36 5 104 0.90 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 211 MipZ PF09140.6 261 6.7e-10 29.8 0.7 1 2 1e-07 1.8e-06 18.6 0.1 2 46 4 48 3 62 0.89 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 211 MipZ PF09140.6 261 6.7e-10 29.8 0.7 2 2 6.2e-05 0.0011 9.5 0.0 91 130 72 111 55 121 0.80 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_12 - 96 MipZ PF09140.6 261 2.2e-07 21.5 0.0 1 1 1.3e-08 2.2e-07 21.5 0.0 2 48 4 50 3 76 0.88 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_23 - 541 UvrD_C_2 PF13538.1 104 4.5e-12 37.5 0.0 1 1 3.5e-13 1.2e-11 36.1 0.0 2 103 195 292 194 293 0.76 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_23 - 541 AAA_22 PF13401.1 131 0.00021 12.8 0.0 1 1 1.6e-05 0.00053 11.5 0.0 88 125 29 65 8 71 0.84 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_31 - 211 AAA_17 PF13207.1 121 4.2e-06 19.0 0.0 1 1 5.5e-07 9.3e-06 17.9 0.0 9 87 13 101 11 169 0.61 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_12 - 96 AAA_17 PF13207.1 121 1.1e-05 17.7 0.1 1 1 1.1e-06 1.9e-05 16.9 0.1 9 32 13 41 11 92 0.67 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_12 - 96 MobB PF03205.9 140 2.1e-07 22.1 0.0 1 1 1.6e-08 2.8e-07 21.7 0.0 2 45 4 46 3 91 0.89 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_31 - 211 MobB PF03205.9 140 6.2e-07 20.6 0.0 1 1 6.8e-08 1.1e-06 19.7 0.0 2 46 4 47 3 112 0.84 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_12 - 96 ArsA_ATPase PF02374.10 305 1.8e-06 18.5 1.0 1 1 1.2e-07 2.1e-06 18.3 0.4 4 34 6 36 3 46 0.87 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_31 - 211 ArsA_ATPase PF02374.10 305 3e-06 17.8 0.2 1 1 4.9e-07 8.3e-06 16.3 0.3 4 34 6 36 3 47 0.87 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 211 Methyltransf_24 PF13578.1 106 6.6e-05 15.2 0.1 1 1 6.3e-06 0.00021 13.5 0.0 23 95 28 105 12 112 0.54 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 211 VirC1 PF07015.6 231 1.5e-05 15.5 0.1 1 1 2.5e-06 4.2e-05 14.0 0.1 3 127 4 123 2 140 0.80 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_12 - 96 VirC1 PF07015.6 231 0.00017 12.1 0.1 1 1 1e-05 0.00017 12.0 0.1 3 43 4 44 2 87 0.89 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_12 - 96 AAA_16 PF13191.1 185 0.00011 13.6 0.1 1 1 8.6e-06 0.00015 13.2 0.1 34 89 13 81 6 93 0.64 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_31 - 211 AAA_16 PF13191.1 185 0.00033 12.1 1.8 1 1 3.4e-05 0.00058 11.2 1.7 34 120 13 140 6 200 0.54 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_12 - 96 AAA_18 PF13238.1 129 2.7e-05 15.9 0.0 1 1 1.8e-06 3e-05 15.7 0.0 8 39 13 49 11 94 0.78 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_31 - 211 AAA_18 PF13238.1 129 3.7e-05 15.4 0.0 1 1 3.7e-06 6.2e-05 14.7 0.0 8 80 13 87 11 98 0.76 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 211 CbiA PF01656.18 195 2.3e-18 57.6 0.6 1 1 9.2e-19 1.6e-17 54.9 0.6 1 175 5 161 5 174 0.77 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_12 - 96 CbiA PF01656.18 195 5.4e-13 40.1 0.4 1 1 8.9e-14 1.5e-12 38.7 0.4 1 38 5 42 5 91 0.89 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_12 - 96 AAA PF00004.24 132 0.00025 12.7 0.0 1 1 1e-05 0.00035 12.2 0.0 8 35 13 40 7 85 0.81 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_6 - 271 TraG-D_C PF12696.2 128 1.5e-36 116.5 0.0 1 1 6e-38 2e-36 116.1 0.0 1 126 103 231 103 233 0.89 # 2606 # 3418 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.645 1_31 - 211 AAA_31 PF13614.1 157 1.8e-08 25.9 0.0 1 2 5.6e-07 9.6e-06 17.0 0.0 2 42 4 44 3 65 0.85 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 211 AAA_31 PF13614.1 157 1.8e-08 25.9 0.0 2 2 0.00066 0.011 7.0 0.0 102 150 62 111 58 116 0.85 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_12 - 96 AAA_31 PF13614.1 157 7.8e-07 20.5 0.0 1 1 6.9e-08 1.2e-06 20.0 0.0 2 44 4 46 3 84 0.80 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_23 - 541 AAA_30 PF13604.1 196 3.4e-44 142.1 2.0 1 1 1e-45 3.4e-44 142.1 2.0 62 195 1 129 1 130 0.96 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_6 - 271 AAA_10 PF12846.2 304 2.3e-07 21.9 0.0 1 1 1.8e-08 3e-07 21.4 0.0 172 300 36 179 7 182 0.81 # 2606 # 3418 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.645 1_12 - 96 AAA_10 PF12846.2 304 0.00029 11.7 0.0 1 1 1.8e-05 0.0003 11.6 0.0 10 53 12 58 5 79 0.76 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_26 - 98 ThiF PF00899.16 136 0.00012 13.3 0.0 1 1 3.9e-06 0.00013 13.2 0.0 58 111 26 80 12 93 0.82 # 16866 # 17159 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_23 - 541 Viral_helicase1 PF01443.13 234 6.6e-10 30.2 0.0 1 2 4e-06 0.00014 12.8 0.0 61 104 27 72 18 94 0.79 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_23 - 541 Viral_helicase1 PF01443.13 234 6.6e-10 30.2 0.0 2 2 7.6e-07 2.6e-05 15.2 0.1 182 233 249 293 208 294 0.82 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_6 - 271 TrwB_AAD_bind PF10412.4 386 1.7e-21 67.6 0.0 1 1 6.6e-23 2.3e-21 67.2 0.0 219 380 78 246 57 251 0.83 # 2606 # 3418 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.645 1_23 - 541 AAA_11 PF13086.1 236 3.7e-07 21.3 0.0 1 1 2.2e-08 7.4e-07 20.3 0.0 177 232 3 71 1 72 0.83 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_6 - 271 T4SS-DNA_transf PF02534.9 469 5e-51 165.0 0.0 1 1 1.9e-52 6.5e-51 164.6 0.0 215 452 17 259 11 267 0.92 # 2606 # 3418 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.645 1_12 - 96 ArgK PF03308.11 267 1.2e-05 15.5 0.2 1 1 1.2e-06 2.1e-05 14.8 0.2 37 85 11 56 2 88 0.83 # 7362 # 7649 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_31 - 211 ArgK PF03308.11 267 3.1e-05 14.2 0.3 1 1 7.7e-06 0.00013 12.1 0.3 37 85 11 56 2 123 0.83 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 211 AAA_25 PF13481.1 194 2.7e-05 15.0 0.7 1 1 6.7e-05 0.0023 8.7 0.7 43 157 13 94 4 113 0.55 # 19132 # 19764 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_23 - 541 Herpes_Helicase PF02689.9 819 8.4e-07 18.4 0.0 1 2 0.00033 0.011 4.7 0.0 176 214 9 47 1 50 0.80 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_23 - 541 Herpes_Helicase PF02689.9 819 8.4e-07 18.4 0.0 2 2 2.6e-06 8.9e-05 11.7 0.0 738 786 247 293 233 307 0.85 # 14776 # 16398 # 1 # ID=1_23;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d12e1fee-6b9b-4668-b4a0-fec3a01748ff # Target file: checkm_output/bins/pGCA_900183985.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_900183985.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d12e1fee-6b9b-4668-b4a0-fec3a01748ff checkm_output/bins/pGCA_900183985.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:24 2020 # [ok]