# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 354 Mg_chelatase PF01078.16 207 0.00056 11.7 0.0 1 1 1.2e-05 0.00099 10.9 0.0 22 51 172 201 155 228 0.82 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 96 IstB_IS21 PF01695.12 178 0.00013 14.0 0.1 1 1 2.5e-05 0.00068 11.7 0.1 56 80 12 36 4 91 0.90 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_3 - 211 IstB_IS21 PF01695.12 178 0.00024 13.2 0.1 1 1 0.00011 0.0029 9.6 0.1 56 81 12 37 5 104 0.85 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 1_23 - 354 IstB_IS21 PF01695.12 178 0.00076 11.5 0.0 1 1 5.3e-05 0.0014 10.6 0.0 46 68 171 193 136 201 0.79 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_3 - 267 MipZ PF09140.6 261 4.9e-15 47.9 0.0 1 1 5.5e-16 1.1e-14 46.7 0.0 2 129 3 143 2 165 0.72 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_3 - 211 MipZ PF09140.6 261 2.3e-09 29.2 0.7 1 1 1.1e-07 2.3e-06 19.4 0.7 2 52 4 54 3 120 0.71 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_22 - 96 MipZ PF09140.6 261 5.2e-07 21.5 0.0 1 1 2.6e-08 5.3e-07 21.5 0.0 2 48 4 50 3 76 0.88 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_33 - 243 MipZ PF09140.6 261 4.9e-05 15.1 0.0 1 1 5.3e-06 0.00011 14.0 0.0 8 47 11 50 5 94 0.91 # 20455 # 21183 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_23 - 354 AIG1 PF04548.11 212 0.00059 11.6 0.0 1 1 1.2e-05 0.00099 10.8 0.0 2 20 174 192 173 219 0.90 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_10 - 551 UvrD_C_2 PF13538.1 104 9.9e-12 37.6 0.0 1 1 3.6e-13 2.9e-11 36.1 0.0 2 103 195 292 194 293 0.76 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_30 - 481 DUF87 PF01935.12 229 6e-05 15.5 0.1 1 1 1.8e-06 0.00014 14.3 0.1 25 56 116 146 113 155 0.84 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_30 - 481 AAA_22 PF13401.1 131 0.00011 14.9 0.0 1 1 1.4e-05 0.00029 13.6 0.0 5 59 115 162 111 226 0.66 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_23 - 354 AAA_22 PF13401.1 131 0.00013 14.7 0.0 1 1 1.8e-05 0.00036 13.3 0.0 5 38 173 216 167 245 0.74 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_10 - 551 AAA_22 PF13401.1 131 0.00044 13.0 0.0 1 1 6.4e-05 0.0013 11.5 0.0 88 125 29 65 8 71 0.84 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 2_3 - 211 AAA_22 PF13401.1 131 0.00068 12.4 0.0 1 1 5.8e-05 0.0012 11.6 0.0 14 95 13 87 5 117 0.69 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 1_24 - 405 tRNA_anti-like PF12869.2 144 0.00026 13.1 0.3 1 1 6.3e-06 0.00051 12.2 0.3 2 51 39 89 38 105 0.86 # 17993 # 19207 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 267 SRP54 PF00448.17 196 4.6e-05 15.5 0.3 1 2 4.1e-05 0.0016 10.4 0.0 10 45 11 45 2 61 0.80 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_3 - 267 SRP54 PF00448.17 196 4.6e-05 15.5 0.3 2 2 0.0078 0.32 3.0 0.0 67 96 97 125 74 132 0.64 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 481 SRP54 PF00448.17 196 0.00056 12.0 0.1 1 1 4.7e-05 0.0019 10.2 0.1 4 38 117 151 115 153 0.91 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 2_3 - 211 AAA_17 PF13207.1 121 1.2e-05 18.7 0.0 1 1 8.8e-07 2.4e-05 17.8 0.0 9 87 13 101 11 175 0.61 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_22 - 96 AAA_17 PF13207.1 121 2.6e-05 17.7 0.1 1 1 1.7e-06 4.6e-05 16.9 0.1 9 32 13 41 11 92 0.67 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_23 - 354 AAA_17 PF13207.1 121 7.5e-05 16.2 0.0 1 1 7.4e-06 0.0002 14.8 0.0 2 20 175 193 174 264 0.84 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 96 MobB PF03205.9 140 5e-07 22.1 0.0 1 1 3.3e-08 6.6e-07 21.7 0.0 2 45 4 46 3 91 0.89 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_3 - 211 MobB PF03205.9 140 1.3e-06 20.8 0.0 1 1 1.3e-07 2.7e-06 19.8 0.0 2 46 4 47 3 109 0.82 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 1_3 - 267 MobB PF03205.9 140 0.00022 13.6 0.0 1 1 2e-05 0.00041 12.7 0.0 8 39 10 40 3 113 0.88 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 481 MobB PF03205.9 140 0.00069 11.9 0.0 1 1 8.1e-05 0.0016 10.7 0.0 4 33 118 147 116 160 0.85 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 267 ArsA_ATPase PF02374.10 305 6.5e-09 27.8 0.0 1 1 7.1e-10 1.9e-08 26.2 0.0 2 46 3 47 2 55 0.90 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_22 - 96 ArsA_ATPase PF02374.10 305 4.4e-06 18.5 1.0 1 1 1.9e-07 5.1e-06 18.3 0.4 4 34 6 36 3 46 0.87 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_3 - 211 ArsA_ATPase PF02374.10 305 7e-06 17.8 0.3 1 1 7.7e-07 2.1e-05 16.3 0.4 4 34 6 36 3 46 0.87 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 1_23 - 354 T2SE PF00437.15 272 5.6e-70 227.9 0.0 1 1 2.4e-71 6.6e-70 227.6 0.0 3 268 13 323 11 327 0.98 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_30 - 481 T2SE PF00437.15 272 0.00022 12.8 0.4 1 1 2.4e-05 0.00065 11.2 0.1 130 155 116 141 111 160 0.84 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 267 T2SE PF00437.15 272 0.00056 11.4 0.0 1 1 3.5e-05 0.00095 10.7 0.0 129 163 3 37 1 53 0.87 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_3 - 211 Methyltransf_24 PF13578.1 106 0.00035 14.0 0.0 1 1 9.6e-06 0.00078 12.9 0.0 23 95 28 105 12 112 0.54 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 1_23 - 354 Zeta_toxin PF06414.7 201 0.00018 13.3 0.0 1 1 3.7e-06 0.0003 12.5 0.0 16 65 172 223 159 241 0.79 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_3 - 267 VirC1 PF07015.6 231 1.6e-12 39.5 0.0 1 2 2.3e-06 6.2e-05 14.7 0.0 1 42 1 42 1 52 0.92 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_3 - 267 VirC1 PF07015.6 231 1.6e-12 39.5 0.0 2 2 6.2e-09 1.7e-07 23.1 0.0 78 134 107 163 93 263 0.82 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_3 - 211 VirC1 PF07015.6 231 3.2e-05 15.7 0.2 1 1 3.6e-06 9.7e-05 14.1 0.1 3 127 4 123 2 134 0.79 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_22 - 96 VirC1 PF07015.6 231 0.00041 12.1 0.1 1 1 1.5e-05 0.00042 12.0 0.1 3 43 4 44 2 87 0.89 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_3 - 267 Fer4_NifH PF00142.13 273 3.1e-07 22.4 0.0 1 1 5.8e-09 4.7e-07 21.8 0.0 4 44 6 46 2 61 0.87 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 481 Arch_ATPase PF01637.13 234 0.00048 12.4 0.0 1 1 1e-05 0.00084 11.7 0.0 23 56 117 151 111 161 0.79 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_30 - 481 AAA_16 PF13191.1 185 0.00016 14.3 0.1 1 1 1.6e-05 0.00065 12.3 0.1 25 44 115 134 103 167 0.78 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 2_22 - 96 AAA_16 PF13191.1 185 0.00026 13.6 0.1 1 1 8.6e-06 0.00035 13.2 0.1 34 89 13 81 6 93 0.64 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_30 - 481 AAA_23 PF13476.1 202 2.1e-05 17.5 0.1 1 1 1.2e-06 4.7e-05 16.4 0.1 20 48 115 145 97 169 0.84 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_23 - 354 AAA_23 PF13476.1 202 0.0012 11.8 1.7 1 1 5.1e-05 0.0021 11.0 1.0 21 41 174 194 153 196 0.84 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_23 - 354 AAA_18 PF13238.1 129 1.3e-05 18.2 0.0 1 1 1.3e-06 3.4e-05 16.8 0.0 1 34 175 212 175 249 0.74 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 211 AAA_18 PF13238.1 129 5.7e-05 16.1 0.0 1 1 3.8e-06 0.0001 15.2 0.0 8 81 13 88 11 99 0.80 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_22 - 96 AAA_18 PF13238.1 129 6.5e-05 15.9 0.0 1 1 2.7e-06 7.3e-05 15.7 0.0 8 39 13 49 11 94 0.78 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_3 - 267 CbiA PF01656.18 195 4.6e-30 97.0 0.0 1 1 2.9e-31 5.8e-30 96.7 0.0 1 178 4 201 4 215 0.79 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_3 - 211 CbiA PF01656.18 195 5.8e-18 57.6 0.8 1 1 2e-18 4.1e-17 54.8 0.8 1 169 5 154 5 172 0.76 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_22 - 96 CbiA PF01656.18 195 1.3e-12 40.1 0.4 1 1 1.8e-13 3.6e-12 38.7 0.4 1 38 5 42 5 91 0.89 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_33 - 243 CbiA PF01656.18 195 7e-09 27.9 0.0 1 1 3.5e-10 7.1e-09 27.9 0.0 3 49 8 62 6 239 0.78 # 20455 # 21183 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_3 - 267 AAA_14 PF13173.1 128 0.00077 12.0 0.0 1 1 1.7e-05 0.0014 11.2 0.0 12 47 12 48 2 79 0.77 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_23 - 354 AAA_29 PF13555.1 62 9.2e-06 17.8 0.0 1 1 5e-07 2e-05 16.7 0.0 8 39 160 188 155 201 0.87 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_30 - 481 AAA_29 PF13555.1 62 0.00014 14.0 0.1 1 1 7.5e-06 0.0003 12.9 0.1 25 42 116 132 103 141 0.80 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 2_22 - 96 AAA PF00004.24 132 0.00059 12.7 0.0 1 1 1e-05 0.00084 12.2 0.0 8 35 13 40 7 85 0.81 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_34 - 151 KH_3 PF13014.1 43 0.00048 12.4 0.2 1 2 0.0012 0.097 5.1 0.0 11 25 5 19 3 19 0.89 # 21186 # 21638 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 2_34 - 151 KH_3 PF13014.1 43 0.00048 12.4 0.2 2 2 0.0012 0.099 5.1 0.1 10 23 58 71 56 73 0.89 # 21186 # 21638 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 2_25 - 91 CobU PF02283.11 167 0.00021 13.3 1.1 1 1 2.6e-06 0.00021 13.3 1.1 29 74 1 45 1 85 0.74 # 14760 # 15032 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.630 1_23 - 354 DUF258 PF03193.11 161 0.00052 11.8 0.0 1 1 1.1e-05 0.00091 11.0 0.0 31 59 168 196 144 239 0.75 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_22 - 640 TraG-D_C PF12696.2 128 5.5e-31 99.7 0.0 1 1 1.6e-32 1.3e-30 98.5 0.0 2 126 393 511 392 513 0.89 # 14999 # 16918 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 267 AAA_31 PF13614.1 157 9.4e-11 34.5 0.1 1 1 1.1e-11 3e-10 32.8 0.1 3 155 4 149 2 151 0.78 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_3 - 211 AAA_31 PF13614.1 157 3.5e-08 26.1 0.0 1 2 8.4e-07 2.3e-05 17.0 0.0 2 42 4 44 3 65 0.85 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_3 - 211 AAA_31 PF13614.1 157 3.5e-08 26.1 0.0 2 2 0.00082 0.022 7.3 0.0 102 150 62 111 58 116 0.85 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_22 - 96 AAA_31 PF13614.1 157 1.8e-06 20.5 0.0 1 1 1e-07 2.8e-06 20.0 0.0 2 44 4 46 3 84 0.80 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_10 - 551 AAA_30 PF13604.1 196 8.4e-44 142.1 2.0 1 1 1e-45 8.4e-44 142.1 2.0 62 195 1 129 1 130 0.96 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_30 - 481 FtsK_SpoIIIE PF01580.13 205 0.00026 13.1 0.0 1 1 5.8e-06 0.00047 12.3 0.0 39 60 110 136 85 140 0.81 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_23 - 354 ABC_tran PF00005.22 137 2.2e-05 17.4 0.0 1 1 5.1e-07 4.1e-05 16.5 0.0 12 47 173 209 165 298 0.82 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_3 - 267 AAA_19 PF13245.1 76 0.00024 13.5 0.0 1 1 7.2e-06 0.00059 12.2 0.0 20 52 12 40 2 64 0.73 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 481 AAA_10 PF12846.2 304 2.5e-35 114.9 0.0 1 1 1.8e-36 3.7e-35 114.3 0.0 2 292 115 391 115 402 0.90 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 2_33 - 243 AAA_10 PF12846.2 304 1.8e-07 23.4 0.0 1 1 1.7e-08 3.4e-07 22.5 0.0 3 64 6 68 4 117 0.82 # 20455 # 21183 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_23 - 354 AAA_10 PF12846.2 304 0.00058 11.9 0.0 1 1 5.1e-05 0.001 11.1 0.0 3 31 174 202 172 211 0.82 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 96 AAA_10 PF12846.2 304 0.00069 11.7 0.0 1 1 3.6e-05 0.00073 11.6 0.0 10 53 12 58 5 79 0.76 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_7 - 95 ThiF PF00899.16 136 0.00027 13.4 0.0 1 1 3.8e-06 0.00031 13.2 0.0 58 111 26 80 12 91 0.83 # 3464 # 3748 # 1 # ID=2_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.621 2_10 - 551 Viral_helicase1 PF01443.13 234 1.5e-09 30.2 0.0 1 2 4.1e-06 0.00034 12.8 0.0 61 104 27 72 18 94 0.79 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 2_10 - 551 Viral_helicase1 PF01443.13 234 1.5e-09 30.2 0.0 2 2 7.8e-07 6.3e-05 15.2 0.1 182 233 249 293 208 294 0.82 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_3 - 267 DUF2075 PF09848.4 352 0.00073 11.1 0.0 1 1 1.3e-05 0.001 10.6 0.0 1 42 2 41 2 65 0.81 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_23 - 354 PduV-EutP PF10662.4 143 0.00057 12.0 0.0 1 1 1.3e-05 0.0011 11.1 0.0 2 21 173 192 172 225 0.93 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_23 - 354 DEAD PF00270.24 169 0.00023 13.3 0.0 1 1 9.3e-06 0.00038 12.6 0.0 12 53 170 208 158 329 0.68 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_30 - 481 DEAD PF00270.24 169 0.00046 12.3 0.0 1 1 2.1e-05 0.00086 11.4 0.0 16 40 116 142 108 251 0.65 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_22 - 640 TrwB_AAD_bind PF10412.4 386 1.7e-27 88.6 0.0 1 1 2.8e-28 1.1e-26 85.8 0.0 63 380 181 526 170 532 0.81 # 14999 # 16918 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_30 - 481 TrwB_AAD_bind PF10412.4 386 0.00047 11.4 0.0 1 2 5e-05 0.002 9.3 0.1 13 45 112 144 108 157 0.83 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_30 - 481 TrwB_AAD_bind PF10412.4 386 0.00047 11.4 0.0 2 2 0.075 3.1 -1.2 0.0 263 322 343 399 335 426 0.72 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 2_10 - 551 AAA_11 PF13086.1 236 6.7e-07 21.7 0.0 1 1 2.2e-08 1.8e-06 20.3 0.0 177 232 3 71 1 72 0.83 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_22 - 640 T4SS-DNA_transf PF02534.9 469 4.1e-100 328.1 0.0 1 1 6.8e-102 5.5e-100 327.7 0.0 46 461 134 548 94 555 0.89 # 14999 # 16918 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 2_22 - 96 ArgK PF03308.11 267 2.8e-05 15.5 0.2 1 1 1.2e-06 4.9e-05 14.8 0.2 37 85 11 56 2 88 0.83 # 13058 # 13345 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_3 - 211 ArgK PF03308.11 267 4.7e-05 14.8 0.3 1 1 6.6e-06 0.00027 12.4 0.3 37 85 11 56 2 122 0.78 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 1_23 - 354 UPF0079 PF02367.12 123 0.00046 12.4 0.0 1 1 1.2e-05 0.00096 11.4 0.0 14 45 171 202 159 205 0.81 # 16932 # 17993 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_3 - 267 AAA_25 PF13481.1 194 1.9e-05 16.7 0.0 1 1 1.1e-06 4.4e-05 15.5 0.0 42 151 11 121 4 129 0.61 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_3 - 211 AAA_25 PF13481.1 194 6e-05 15.1 0.7 1 1 0.00013 0.0053 8.7 0.7 43 157 13 94 4 113 0.55 # 898 # 1530 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.668 2_10 - 551 Herpes_Helicase PF02689.9 819 2e-06 18.3 0.0 1 2 0.00034 0.027 4.7 0.0 176 214 9 47 1 50 0.80 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 2_10 - 551 Herpes_Helicase PF02689.9 819 2e-06 18.3 0.0 2 2 2.7e-06 0.00022 11.6 0.0 738 786 247 293 233 307 0.85 # 4185 # 5837 # -1 # ID=2_10;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.652 1_30 - 481 AAA_5 PF07728.9 139 0.00036 12.9 0.2 1 2 2.6e-05 0.0021 10.4 0.1 1 38 116 154 116 165 0.86 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_30 - 481 AAA_5 PF07728.9 139 0.00036 12.9 0.2 2 2 0.056 4.5 -0.4 0.0 68 94 207 232 185 241 0.84 # 23164 # 24606 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 267 APS_kinase PF01583.15 157 4.5e-05 15.8 0.0 1 1 1e-06 8.4e-05 14.9 0.0 4 40 4 40 1 51 0.90 # 1854 # 2654 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0a8b567d-64fb-4bfd-8b87-fe58e171c722 # Target file: checkm_output/bins/pGCA_900183975.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_900183975.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0a8b567d-64fb-4bfd-8b87-fe58e171c722 checkm_output/bins/pGCA_900183975.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:25 2020 # [ok]