# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 540 cobW PF02492.14 178 0.00049 10.6 2.2 1 2 0.0014 0.038 4.4 0.4 3 21 32 50 30 60 0.82 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 cobW PF02492.14 178 0.00049 10.6 2.2 2 2 0.0013 0.036 4.5 0.1 4 60 361 425 359 442 0.69 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_25 - 193 RuvB_C PF05491.8 76 0.00019 12.2 0.4 1 2 0.038 1 0.2 0.1 55 67 121 133 117 139 0.82 # 24588 # 25166 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_25 - 193 RuvB_C PF05491.8 76 0.00019 12.2 0.4 2 2 8.6e-05 0.0023 8.7 0.0 6 43 145 178 142 182 0.86 # 24588 # 25166 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_14 - 540 DUF87 PF01935.12 229 7.3e-05 13.7 0.3 1 2 0.028 0.77 0.5 0.2 26 43 32 49 21 66 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 DUF87 PF01935.12 229 7.3e-05 13.7 0.3 2 2 2.7e-06 7.3e-05 13.7 0.3 24 44 358 378 349 390 0.85 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 NB-ARC PF00931.17 287 2e-05 14.6 1.7 1 3 0.0001 0.0027 7.6 0.1 19 37 29 47 12 63 0.84 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 NB-ARC PF00931.17 287 2e-05 14.6 1.7 2 3 0.084 2.3 -2.0 0.1 213 248 92 126 71 131 0.69 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 NB-ARC PF00931.17 287 2e-05 14.6 1.7 3 3 0.00049 0.013 5.3 0.0 21 40 359 378 347 472 0.93 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_22 PF13401.1 131 5.1e-07 21.0 2.6 1 2 0.0018 0.049 4.9 0.0 9 27 34 52 27 131 0.77 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_22 PF13401.1 131 5.1e-07 21.0 2.6 2 2 3.6e-06 9.6e-05 13.6 0.4 3 99 356 478 354 499 0.52 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SRP54 PF00448.17 196 3.1e-06 17.8 0.7 1 4 2.7e-05 0.00073 10.0 0.0 6 77 34 102 30 117 0.67 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SRP54 PF00448.17 196 3.1e-06 17.8 0.7 2 4 0.0097 0.26 1.7 0.0 45 81 274 310 270 315 0.79 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SRP54 PF00448.17 196 3.1e-06 17.8 0.7 3 4 0.033 0.9 -0.0 0.1 4 18 360 374 358 380 0.86 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SRP54 PF00448.17 196 3.1e-06 17.8 0.7 4 4 0.046 1.3 -0.5 0.0 109 148 459 499 455 505 0.85 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_15 PF13175.1 415 8.8e-05 12.7 39.4 1 5 0.00054 0.015 5.3 6.2 26 153 33 155 2 168 0.57 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_15 PF13175.1 415 8.8e-05 12.7 39.4 2 5 0.012 0.32 0.9 8.8 241 397 59 206 56 220 0.58 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_15 PF13175.1 415 8.8e-05 12.7 39.4 3 5 0.0097 0.26 1.2 5.0 243 353 241 349 218 360 0.53 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_15 PF13175.1 415 8.8e-05 12.7 39.4 4 5 5.2e-05 0.0014 8.7 4.9 26 76 361 404 346 449 0.67 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_15 PF13175.1 415 8.8e-05 12.7 39.4 5 5 9.5e-05 0.0026 7.8 0.1 368 414 464 506 459 507 0.80 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_17 PF13207.1 121 1.5e-06 20.2 4.7 1 2 0.00035 0.0047 8.8 0.3 2 21 32 51 31 156 0.75 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_17 PF13207.1 121 1.5e-06 20.2 4.7 2 2 2.5e-05 0.00034 12.5 0.1 2 77 360 425 359 500 0.70 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_6 - 225 AAA_17 PF13207.1 121 1.1e-05 17.3 1.4 1 1 1.3e-06 1.7e-05 16.7 1.4 23 113 24 122 19 205 0.84 # 4089 # 4763 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 1_14 - 540 AAA_21 PF13304.1 303 4.5e-22 70.3 18.1 1 3 9.9e-14 1.3e-12 39.2 2.2 3 303 33 221 32 221 0.78 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_21 PF13304.1 303 4.5e-22 70.3 18.1 2 3 2.8e-09 3.7e-08 24.6 2.2 3 70 361 412 360 424 0.69 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_21 PF13304.1 303 4.5e-22 70.3 18.1 3 3 7e-06 9.5e-05 13.4 0.2 219 303 419 508 395 508 0.71 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 AAA_21 PF13304.1 303 1.4e-13 42.4 2.5 1 1 9.7e-14 1.3e-12 39.3 0.8 3 297 49 203 47 208 0.94 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 Miro PF08477.8 119 1.3e-10 32.9 0.3 1 2 7.8e-06 0.00021 12.9 0.0 2 26 32 59 31 119 0.74 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Miro PF08477.8 119 1.3e-10 32.9 0.3 2 2 3.8e-07 1e-05 17.1 0.1 1 38 359 399 359 454 0.73 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 MobB PF03205.9 140 8.8e-07 19.8 0.4 1 2 0.00094 0.013 6.3 0.1 3 21 32 50 30 62 0.89 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 MobB PF03205.9 140 8.8e-07 19.8 0.4 2 2 3.6e-05 0.00049 10.9 0.0 3 21 360 378 358 407 0.91 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 MobB PF03205.9 140 9.2e-05 13.2 0.1 1 1 2.2e-05 0.00029 11.6 0.0 3 27 48 72 46 83 0.88 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 MCM PF00493.18 331 2.5e-05 14.2 0.0 1 2 0.069 1.9 -1.8 0.4 240 273 247 280 167 319 0.53 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 MCM PF00493.18 331 2.5e-05 14.2 0.0 2 2 9.3e-07 2.5e-05 14.2 0.0 25 78 331 378 315 392 0.78 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 T2SE PF00437.15 272 2.5e-05 14.3 3.0 1 2 0.013 0.36 0.7 0.1 130 148 31 49 6 61 0.72 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 T2SE PF00437.15 272 2.5e-05 14.3 3.0 2 2 1.6e-06 4.4e-05 13.5 0.3 32 158 252 387 224 393 0.65 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SMC_N PF02463.14 220 2.1e-12 37.7 7.1 1 2 2.9e-09 4e-08 23.8 0.7 26 212 31 231 7 238 0.61 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SMC_N PF02463.14 220 2.1e-12 37.7 7.1 2 2 4.3e-05 0.00058 10.1 0.8 25 49 358 379 347 523 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 SMC_N PF02463.14 220 0.0006 10.1 4.0 1 3 0.0001 0.0014 8.9 0.4 9 41 31 62 26 73 0.71 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_16 - 309 SMC_N PF02463.14 220 0.0006 10.1 4.0 2 3 0.083 1.1 -0.6 0.0 160 193 165 198 154 222 0.72 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_16 - 309 SMC_N PF02463.14 220 0.0006 10.1 4.0 3 3 0.036 0.48 0.6 0.1 55 95 231 274 226 292 0.70 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 AAA_16 PF13191.1 185 1.1e-07 23.0 0.0 1 2 0.00018 0.0025 8.9 0.0 22 84 27 96 16 128 0.69 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_16 PF13191.1 185 1.1e-07 23.0 0.0 2 2 3.2e-05 0.00043 11.3 0.0 23 42 356 375 346 392 0.90 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 AAA_16 PF13191.1 185 8.8e-05 13.6 0.0 1 1 2e-05 0.00027 12.0 0.0 24 52 45 76 31 162 0.81 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_16 - 309 AAA_23 PF13476.1 202 4.8e-08 24.6 3.9 1 1 6.3e-09 8.5e-08 23.8 3.9 6 199 31 281 27 286 0.50 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 AAA_23 PF13476.1 202 4.7e-06 18.1 4.1 1 1 3.5e-07 4.7e-06 18.1 4.1 22 124 360 488 345 538 0.50 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_18 PF13238.1 129 1.4e-06 19.7 4.2 1 2 0.00012 0.0033 8.8 0.1 1 72 32 110 32 135 0.56 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_18 PF13238.1 129 1.4e-06 19.7 4.2 2 2 2.1e-05 0.00056 11.3 0.1 1 54 360 425 360 494 0.66 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_29 PF13555.1 62 1.2e-10 32.0 0.3 1 2 3.1e-05 0.00042 11.0 0.1 11 40 18 46 12 52 0.83 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_29 PF13555.1 62 1.2e-10 32.0 0.3 2 2 1.8e-07 2.5e-06 18.1 0.0 12 40 347 374 342 381 0.82 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 AAA_29 PF13555.1 62 3.4e-06 17.7 0.2 1 1 6.8e-07 9.1e-06 16.3 0.2 13 40 36 62 28 71 0.76 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 AAA PF00004.24 132 3.1e-05 15.3 1.2 1 2 0.0011 0.031 5.6 0.1 3 20 34 51 32 71 0.89 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA PF00004.24 132 3.1e-05 15.3 1.2 2 2 0.0005 0.013 6.7 0.0 2 23 361 382 360 432 0.80 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_1 - 318 RNA_pol_Rpb1_5 PF04998.12 277 0.0019 8.5 8.4 1 1 0.00013 0.0034 7.6 8.4 129 254 113 234 77 244 0.75 # 1 # 954 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.236 1_14 - 540 Sigma54_activat PF00158.21 168 7.5e-05 13.3 0.9 1 3 0.012 0.33 1.4 0.0 9 42 16 49 9 61 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Sigma54_activat PF00158.21 168 7.5e-05 13.3 0.9 2 3 0.038 1 -0.2 0.1 96 125 217 246 203 277 0.72 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Sigma54_activat PF00158.21 168 7.5e-05 13.3 0.9 3 3 0.00013 0.0034 7.9 0.0 12 45 347 380 343 399 0.82 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 MMR_HSR1 PF01926.18 116 9.3e-05 13.5 11.9 1 2 0.0005 0.014 6.5 1.4 2 24 32 55 31 240 0.83 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 MMR_HSR1 PF01926.18 116 9.3e-05 13.5 11.9 2 2 2.9e-05 0.00079 10.5 2.9 1 89 359 474 359 519 0.63 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 DUF258 PF03193.11 161 3.1e-09 27.3 1.1 1 2 1.1e-05 0.00015 12.0 0.1 21 68 14 62 2 70 0.82 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 DUF258 PF03193.11 161 3.1e-09 27.3 1.1 2 2 4.8e-06 6.5e-05 13.2 0.1 28 70 349 392 326 398 0.83 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 DUF258 PF03193.11 161 4e-05 13.9 0.1 1 1 6.2e-06 8.3e-05 12.9 0.1 22 65 31 75 16 83 0.82 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 DLIC PF05783.6 472 3e-06 17.1 0.6 1 2 9.7e-06 0.00026 10.7 0.1 21 54 25 58 7 71 0.90 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 DLIC PF05783.6 472 3e-06 17.1 0.6 2 2 0.00099 0.027 4.1 0.0 24 65 356 402 348 443 0.70 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 NTPase_1 PF03266.10 168 0.0019 9.0 5.0 1 2 0.0018 0.048 4.4 0.2 2 20 32 50 31 64 0.83 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 NTPase_1 PF03266.10 168 0.0019 9.0 5.0 2 2 0.00085 0.023 5.4 0.2 1 20 359 378 359 388 0.87 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 AAA_33 PF13671.1 143 0.00022 12.2 0.0 1 1 2.5e-05 0.00068 10.6 0.0 4 38 50 89 48 108 0.79 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 AAA_30 PF13604.1 196 1.5e-06 18.9 0.2 1 3 0.0004 0.011 6.4 0.0 11 39 23 50 20 59 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_30 PF13604.1 196 1.5e-06 18.9 0.2 2 3 0.049 1.3 -0.5 0.0 90 130 168 217 147 222 0.74 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_30 PF13604.1 196 1.5e-06 18.9 0.2 3 3 0.00013 0.0035 7.9 0.0 15 38 355 377 348 392 0.75 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 FtsK_SpoIIIE PF01580.13 205 8e-05 13.2 1.9 1 2 0.021 0.57 0.6 0.1 43 56 34 47 16 51 0.84 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 FtsK_SpoIIIE PF01580.13 205 8e-05 13.2 1.9 2 2 2.2e-05 0.00058 10.4 0.0 36 56 355 375 316 381 0.83 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Dynamin_N PF00350.18 168 6.8e-08 23.5 5.2 1 3 1.9e-05 0.00052 10.9 0.2 1 89 32 118 32 215 0.80 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Dynamin_N PF00350.18 168 6.8e-08 23.5 5.2 2 3 0.083 2.2 -0.9 0.3 58 74 260 276 227 333 0.63 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Dynamin_N PF00350.18 168 6.8e-08 23.5 5.2 3 3 2.4e-06 6.5e-05 13.9 0.0 1 47 360 405 360 465 0.77 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 ABC_tran PF00005.22 137 1.5e-53 171.9 5.5 1 2 2e-31 2.7e-30 96.5 0.2 2 137 20 189 19 189 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 ABC_tran PF00005.22 137 1.5e-53 171.9 5.5 2 2 1.9e-25 2.6e-24 77.2 0.1 2 137 348 476 347 476 0.82 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_16 - 309 ABC_tran PF00005.22 137 3e-28 89.9 0.2 1 1 1.3e-28 1.7e-27 87.4 0.0 1 137 35 174 35 174 0.95 # 16619 # 17545 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_14 - 540 ATP-synt_ab PF00006.20 215 1.6e-05 15.5 0.0 1 2 0.00072 0.02 5.4 0.0 11 38 25 52 21 120 0.87 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 ATP-synt_ab PF00006.20 215 1.6e-05 15.5 0.0 2 2 0.00026 0.007 6.9 0.1 12 34 354 376 349 388 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_19 PF13245.1 76 1.1e-05 16.2 0.3 1 2 0.0018 0.05 4.5 0.1 13 34 32 52 21 67 0.78 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_19 PF13245.1 76 1.1e-05 16.2 0.3 2 2 5.6e-05 0.0015 9.4 0.0 6 34 353 380 348 399 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_10 PF12846.2 304 0.00056 10.4 0.1 1 2 0.004 0.11 2.9 0.2 6 22 34 50 31 59 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_10 PF12846.2 304 0.00056 10.4 0.1 2 2 2.1e-05 0.00056 10.4 0.1 3 22 359 378 357 390 0.86 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SbcCD_C PF13558.1 90 6.2e-09 26.8 0.2 1 2 4e-06 0.00011 13.2 0.0 26 89 154 204 129 205 0.83 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 SbcCD_C PF13558.1 90 6.2e-09 26.8 0.2 2 2 0.00015 0.004 8.2 0.1 29 86 444 488 437 492 0.69 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 PduV-EutP PF10662.4 143 6.8e-05 13.5 0.4 1 2 0.00015 0.0042 7.7 0.0 5 25 33 53 30 107 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 PduV-EutP PF10662.4 143 6.8e-05 13.5 0.4 2 2 0.0032 0.087 3.4 0.1 3 23 359 379 357 390 0.86 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Sigma54_activ_2 PF14532.1 138 9.1e-05 13.6 0.0 1 2 0.00028 0.0077 7.4 0.0 1 56 9 70 9 109 0.80 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 Sigma54_activ_2 PF14532.1 138 9.1e-05 13.6 0.0 2 2 0.0061 0.16 3.1 0.0 11 39 347 375 345 391 0.84 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 GTP_EFTU PF00009.22 188 0.00011 12.7 0.4 1 2 0.0094 0.25 1.7 0.0 6 25 32 51 30 73 0.83 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 GTP_EFTU PF00009.22 188 0.00011 12.7 0.4 2 2 0.00012 0.0031 8.0 0.1 6 34 360 387 356 419 0.77 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 RNA_helicase PF00910.17 107 3e-05 15.3 0.2 1 2 0.00065 0.018 6.4 0.0 3 19 34 50 32 84 0.82 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 RNA_helicase PF00910.17 107 3e-05 15.3 0.2 2 2 0.00092 0.025 5.9 0.0 2 18 361 377 360 402 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 UPF0079 PF02367.12 123 6.7e-06 16.9 0.9 1 2 8.3e-05 0.0022 8.7 0.1 9 36 23 50 16 62 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 UPF0079 PF02367.12 123 6.7e-06 16.9 0.9 2 2 0.00077 0.021 5.6 0.1 7 36 349 378 344 390 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_24 PF13479.1 213 0.00042 10.9 5.1 1 2 0.0021 0.058 4.0 0.2 8 34 34 55 31 131 0.68 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_24 PF13479.1 213 0.00042 10.9 5.1 2 2 9.3e-05 0.0025 8.4 0.0 5 34 359 386 355 486 0.75 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 NACHT PF05729.7 166 9.9e-09 26.1 0.2 1 2 2.5e-05 0.00066 10.4 0.2 2 21 31 50 30 57 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 NACHT PF05729.7 166 9.9e-09 26.1 0.2 2 2 3.5e-06 9.5e-05 13.1 0.0 3 71 360 429 358 521 0.80 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_25 PF13481.1 194 1.1e-06 19.3 1.1 1 4 0.0014 0.038 4.4 0.1 30 54 26 50 18 71 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_25 PF13481.1 194 1.1e-06 19.3 1.1 2 4 0.066 1.8 -1.1 0.0 118 147 185 213 165 213 0.69 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_25 PF13481.1 194 1.1e-06 19.3 1.1 3 4 0.098 2.6 -1.6 0.0 75 138 253 306 235 340 0.53 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_25 PF13481.1 194 1.1e-06 19.3 1.1 4 4 1.7e-05 0.00045 10.7 0.0 29 51 353 375 343 401 0.85 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 ABC_tran_2 PF12848.2 85 3.5e-26 82.0 9.3 1 2 1.3e-27 3.5e-26 82.0 9.3 1 83 228 320 228 322 0.88 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 ABC_tran_2 PF12848.2 85 3.5e-26 82.0 9.3 2 2 0.0044 0.12 3.4 0.7 3 22 517 535 515 538 0.81 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_28 PF13521.1 163 0.0001 13.4 0.4 1 2 0.0021 0.056 4.5 0.0 4 22 34 52 31 114 0.85 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_28 PF13521.1 163 0.0001 13.4 0.4 2 2 0.00053 0.014 6.4 0.2 2 17 360 375 359 386 0.92 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_5 PF07728.9 139 9.9e-06 16.4 0.1 1 2 0.00038 0.01 6.6 0.0 4 51 34 81 31 97 0.78 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_14 - 540 AAA_5 PF07728.9 139 9.9e-06 16.4 0.1 2 2 0.00025 0.0068 7.2 0.0 1 23 359 381 359 393 0.84 # 12984 # 14603 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.298 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a3e7c763-b143-405d-906b-bcf29ee3a573 # Target file: checkm_output/bins/pGCA_900155335.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_900155335.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a3e7c763-b143-405d-906b-bcf29ee3a573 checkm_output/bins/pGCA_900155335.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:23 2020 # [ok]