# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 193 RuvB_C PF05491.8 76 0.00023 12.0 0.4 1 2 0.038 1.1 0.2 0.1 55 67 121 133 117 139 0.82 # 12604 # 13182 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_14 - 193 RuvB_C PF05491.8 76 0.00023 12.0 0.4 2 2 8.6e-05 0.0026 8.7 0.0 6 43 145 178 142 182 0.86 # 12604 # 13182 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_17 - 324 NmrA PF05368.8 233 4.3e-06 17.3 0.6 1 1 3.2e-07 9.7e-06 16.1 0.6 1 52 152 205 152 264 0.90 # 14816 # 15787 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.318 1_17 - 324 ADH_zinc_N PF00107.21 130 1.6e-17 54.5 0.0 1 1 1.1e-18 3.3e-17 53.5 0.0 1 114 160 267 160 285 0.91 # 14816 # 15787 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.318 1_17 - 324 NAD_binding_10 PF13460.1 183 5.9e-06 17.6 0.1 1 1 2.8e-07 8.5e-06 17.1 0.1 1 38 152 192 152 222 0.86 # 14816 # 15787 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.318 1_17 - 324 Epimerase PF01370.16 236 9.2e-05 13.1 0.1 1 1 4.1e-06 0.00012 12.7 0.1 1 39 152 191 152 247 0.82 # 14816 # 15787 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.318 1_17 - 324 DapB_N PF01113.15 124 3.3e-06 18.3 0.2 1 2 0.042 1.3 0.2 0.0 92 103 121 132 115 142 0.84 # 14816 # 15787 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.318 1_17 - 324 DapB_N PF01113.15 124 3.3e-06 18.3 0.2 2 2 1.1e-06 3.3e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 14816 # 15787 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.318 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/991bac5f-8880-443b-95b6-77ce6e673598 # Target file: checkm_output/bins/pGCA_900129335.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_900129335.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/991bac5f-8880-443b-95b6-77ce6e673598 checkm_output/bins/pGCA_900129335.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:22 2020 # [ok]