# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 5_3 - 217 Mg_chelatase PF01078.16 207 0.00041 12.8 0.0 1 2 1.1e-05 0.0015 11.0 0.0 20 62 29 70 17 87 0.82 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 Mg_chelatase PF01078.16 207 0.00041 12.8 0.0 2 2 0.055 7.3 -1.1 0.0 109 137 155 188 153 208 0.59 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 2_2 - 111 Seryl_tRNA_N PF02403.17 108 8.1e-05 15.9 1.6 1 1 8.3e-07 0.00011 15.5 1.6 25 83 49 108 22 109 0.80 # 1069 # 1401 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.318 6_5 - 716 ABC_ATPase PF09818.4 448 0.00025 13.0 2.5 1 2 0.015 1.9 0.1 0.1 247 262 511 526 501 530 0.81 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_5 - 716 ABC_ATPase PF09818.4 448 0.00025 13.0 2.5 2 2 3.6e-06 0.00048 12.0 0.5 295 379 591 675 584 700 0.84 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 IstB_IS21 PF01695.12 178 0.0005 12.8 0.4 1 2 9.8e-05 0.013 8.2 0.0 39 63 21 46 8 59 0.80 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 IstB_IS21 PF01695.12 178 0.0005 12.8 0.4 2 2 0.0042 0.55 2.9 0.1 107 171 151 212 136 216 0.67 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 4_7 - 253 MipZ PF09140.6 261 5.2e-10 32.1 0.6 1 2 1.9e-07 2.5e-05 16.7 0.1 3 59 4 60 2 69 0.88 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 4_7 - 253 MipZ PF09140.6 261 5.2e-10 32.1 0.6 2 2 1.2e-06 0.00016 14.1 0.1 35 129 64 153 58 159 0.83 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 4_7 - 253 YhjQ PF06564.7 244 9.2e-05 15.2 0.0 1 1 1.1e-06 0.00015 14.5 0.0 1 150 1 155 1 179 0.77 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 6_5 - 716 DUF87 PF01935.12 229 0.00011 15.4 0.1 1 1 1.6e-06 0.00011 15.4 0.1 24 45 509 530 492 539 0.84 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 DUF87 PF01935.12 229 0.0024 11.0 3.7 1 1 2.8e-05 0.0019 11.3 1.0 25 59 32 64 29 66 0.89 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_5 - 716 NB-ARC PF00931.17 287 0.00013 14.2 0.1 1 1 2.1e-06 0.00027 13.1 0.1 17 42 506 531 495 538 0.77 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 AAA_22 PF13401.1 131 9.9e-07 22.3 0.3 1 1 4.3e-08 2.9e-06 20.8 0.3 6 122 32 191 29 198 0.77 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_5 - 716 AAA_22 PF13401.1 131 1.8e-06 21.4 1.8 1 1 3.7e-07 2.5e-05 17.8 1.8 7 111 511 665 505 688 0.62 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_5 - 716 ATP_bind_1 PF03029.12 238 0.00051 12.9 0.2 1 1 9.4e-06 0.0012 11.6 0.2 1 22 513 534 513 541 0.88 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 MutS_V PF00488.16 235 2.3e-05 17.2 0.1 1 2 5.4e-06 0.00072 12.3 0.0 31 66 18 53 7 81 0.80 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 MutS_V PF00488.16 235 2.3e-05 17.2 0.1 2 2 0.0042 0.55 2.8 0.1 126 178 156 207 146 216 0.76 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 3_11 - 68 YjeF_N PF03853.10 169 0.0023 10.9 0.7 1 1 1.9e-05 0.0025 10.7 0.7 101 119 10 28 4 57 0.77 # 4868 # 5071 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.338 4_7 - 253 SRP54 PF00448.17 196 0.00095 11.9 4.8 1 2 2.4e-05 0.0031 10.2 0.7 11 42 12 43 2 51 0.87 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 4_7 - 253 SRP54 PF00448.17 196 0.00095 11.9 4.8 2 2 0.0051 0.67 2.6 0.0 46 92 82 131 69 135 0.67 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 9_1 - 193 AAA_15 PF13175.1 415 2.9e-10 33.0 20.7 1 2 3.6e-08 4.7e-06 19.1 9.4 10 81 10 84 3 113 0.84 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 9_1 - 193 AAA_15 PF13175.1 415 2.9e-10 33.0 20.7 2 2 2.4e-08 3.2e-06 19.7 3.6 363 410 134 175 117 177 0.87 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 1_17 - 170 NAD_binding_7 PF13241.1 103 0.00099 12.7 0.0 1 1 1.1e-05 0.0014 12.2 0.0 57 102 48 100 9 101 0.74 # 18682 # 19191 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 6_5 - 716 AAA_17 PF13207.1 121 2.4e-05 18.4 0.2 1 1 2.4e-06 0.00011 16.4 0.1 3 22 512 531 510 665 0.84 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 AAA_17 PF13207.1 121 3.2e-05 18.1 0.0 1 1 1.6e-06 6.9e-05 17.0 0.0 2 34 33 75 32 210 0.73 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_9 - 34 AAA_17 PF13207.1 121 0.0009 13.4 0.1 1 1 2.2e-05 0.00098 13.3 0.1 2 16 15 29 14 33 0.88 # 4555 # 4656 # -1 # ID=5_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 9_1 - 193 AAA_21 PF13304.1 303 1.2e-16 54.8 13.9 1 2 4.9e-08 2.2e-06 21.1 4.0 1 62 24 83 24 90 0.81 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 9_1 - 193 AAA_21 PF13304.1 303 1.2e-16 54.8 13.9 2 2 2.2e-13 9.5e-12 38.7 8.5 150 299 59 177 49 181 0.67 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 5_3 - 217 AAA_21 PF13304.1 303 2.7e-11 37.2 0.2 1 2 6.9e-07 3e-05 17.3 0.0 4 61 35 92 33 116 0.85 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_21 PF13304.1 303 2.7e-11 37.2 0.2 2 2 4e-07 1.7e-05 18.1 0.1 233 300 131 196 112 199 0.85 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_5 - 716 AAA_21 PF13304.1 303 1.8e-08 27.9 8.2 1 2 5e-06 0.00022 14.5 0.0 4 64 513 583 511 591 0.82 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_5 - 716 AAA_21 PF13304.1 303 1.8e-08 27.9 8.2 2 2 2.7e-06 0.00012 15.4 0.1 234 294 617 671 611 678 0.85 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_5 - 716 MobB PF03205.9 140 0.00025 14.0 0.3 1 1 6.1e-06 0.00081 12.4 0.3 4 23 512 531 510 540 0.91 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 4_7 - 253 ArsA_ATPase PF02374.10 305 3.7e-10 32.6 0.9 1 1 5.9e-12 7.8e-10 31.5 0.9 9 141 10 137 2 222 0.72 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 9_1 - 193 PhoH PF02562.11 205 0.00049 12.6 0.0 1 1 5.2e-06 0.00068 12.2 0.0 18 96 21 106 5 175 0.78 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 6_5 - 716 T2SE PF00437.15 272 1.6e-06 20.5 0.3 1 1 6.2e-08 4.1e-06 19.1 0.1 61 158 442 538 425 541 0.82 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 T2SE PF00437.15 272 0.00025 13.3 0.1 1 1 7.9e-06 0.00052 12.2 0.0 119 159 21 61 2 73 0.77 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 1_15 - 973 SKI PF01202.17 158 0.0024 11.1 2.6 1 2 8.9e-05 0.012 8.8 0.0 5 61 74 131 72 194 0.92 # 15156 # 18074 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_15 - 973 SKI PF01202.17 158 0.0024 11.1 2.6 2 2 0.042 5.6 0.1 0.1 90 131 513 554 487 567 0.69 # 15156 # 18074 # -1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 6_5 - 716 G-alpha PF00503.15 389 0.0024 9.8 2.5 1 1 6.5e-06 0.00086 11.3 0.1 48 86 498 536 465 659 0.90 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_9 - 34 Zeta_toxin PF06414.7 201 0.00051 12.4 0.0 1 1 3.9e-06 0.00051 12.4 0.0 13 36 9 32 1 33 0.80 # 4555 # 4656 # -1 # ID=5_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 9_1 - 193 SMC_N PF02463.14 220 1.1e-13 44.2 4.3 1 2 6.9e-08 3e-06 19.9 1.3 11 57 10 55 2 65 0.76 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 9_1 - 193 SMC_N PF02463.14 220 1.1e-13 44.2 4.3 2 2 1.4e-09 6.2e-08 25.4 0.6 135 207 76 185 44 188 0.69 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 5_3 - 217 SMC_N PF02463.14 220 7.2e-12 38.3 0.1 1 2 0.0049 0.22 4.0 0.0 27 50 33 56 20 67 0.81 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 SMC_N PF02463.14 220 7.2e-12 38.3 0.1 2 2 9.6e-12 4.2e-10 32.5 0.0 102 213 93 209 72 216 0.83 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_5 - 716 SMC_N PF02463.14 220 5.6e-05 15.7 7.0 1 2 0.002 0.087 5.3 0.2 27 42 511 526 493 564 0.83 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_5 - 716 SMC_N PF02463.14 220 5.6e-05 15.7 7.0 2 2 1.3e-05 0.00058 12.4 2.3 117 212 583 689 573 695 0.77 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 4_7 - 253 VirC1 PF07015.6 231 6.9e-09 28.4 2.2 1 2 4.5e-06 0.00059 12.2 0.0 1 74 1 75 1 112 0.79 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 4_7 - 253 VirC1 PF07015.6 231 6.9e-09 28.4 2.2 2 2 3.2e-07 4.2e-05 16.0 0.5 82 165 121 202 104 215 0.88 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 4_7 - 253 Fer4_NifH PF00142.13 273 3.7e-06 19.5 4.2 1 1 7.4e-07 9.7e-05 14.9 4.2 8 53 10 55 3 252 0.79 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 6_5 - 716 AAA_16 PF13191.1 185 2.2e-05 17.8 0.6 1 1 1e-06 4.6e-05 16.8 0.2 27 159 511 646 496 675 0.55 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 AAA_16 PF13191.1 185 0.0001 15.7 1.4 1 2 1e-05 0.00045 13.5 0.6 25 56 31 63 17 189 0.79 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_16 PF13191.1 185 0.0001 15.7 1.4 2 2 0.055 2.4 1.4 0.1 71 111 169 209 156 215 0.78 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_9 - 34 AAA_16 PF13191.1 185 0.00051 13.3 0.0 1 1 1.2e-05 0.00051 13.3 0.0 20 41 8 29 3 33 0.85 # 4555 # 4656 # -1 # ID=5_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 9_1 - 193 AAA_23 PF13476.1 202 1.8e-06 21.7 9.6 1 1 3.8e-08 2.5e-06 21.2 9.6 14 137 17 160 5 191 0.63 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 5_3 - 217 AAA_23 PF13476.1 202 0.00066 13.3 0.1 1 1 1.2e-05 0.0008 13.0 0.1 24 62 35 72 24 183 0.83 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_18 PF13238.1 129 8.4e-08 25.9 0.0 1 2 6.8e-08 3e-06 20.9 0.0 1 42 33 74 33 120 0.88 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_18 PF13238.1 129 8.4e-08 25.9 0.0 2 2 0.019 0.83 3.3 0.0 49 92 163 204 123 214 0.81 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_5 - 716 AAA_18 PF13238.1 129 0.00033 14.3 0.1 1 1 3.5e-05 0.0015 12.1 0.0 2 19 512 529 511 575 0.85 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 9_1 - 193 AAA_18 PF13238.1 129 0.00034 14.2 3.3 1 1 0.00055 0.024 8.2 3.3 5 84 29 178 26 189 0.59 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 4_7 - 253 CbiA PF01656.18 195 1.5e-32 105.9 1.9 1 1 1.4e-34 1.8e-32 105.6 1.9 1 180 4 212 4 231 0.78 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 6_5 - 716 AAA_14 PF13173.1 128 0.00039 13.6 0.1 1 2 9e-05 0.0059 9.8 0.0 2 42 508 548 507 579 0.65 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_5 - 716 AAA_14 PF13173.1 128 0.00039 13.6 0.1 2 2 0.084 5.6 0.2 0.0 51 102 655 703 612 708 0.51 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 AAA_14 PF13173.1 128 0.00091 12.4 0.1 1 2 0.00034 0.022 8.0 0.0 5 24 33 52 29 89 0.82 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_14 PF13173.1 128 0.00091 12.4 0.1 2 2 0.013 0.87 2.8 0.0 62 114 153 212 106 216 0.72 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 1_21 - 67 CSD PF00313.17 66 4e-34 109.6 1.4 1 1 6.5e-36 4.3e-34 109.5 1.4 2 65 3 65 2 66 0.98 # 21572 # 21772 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.358 1_22 - 67 CSD PF00313.17 66 1.2e-21 69.6 0.3 1 1 2e-23 1.3e-21 69.5 0.3 2 65 3 65 2 66 0.96 # 22051 # 22251 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 5_3 - 217 AAA_29 PF13555.1 62 4.8e-07 22.6 0.1 1 1 2.8e-08 9.3e-07 21.7 0.1 6 40 14 47 9 62 0.79 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_9 - 34 AAA_29 PF13555.1 62 1.8e-05 17.5 0.1 1 1 5.8e-07 1.9e-05 17.5 0.1 16 39 5 28 1 29 0.81 # 4555 # 4656 # -1 # ID=5_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 6_5 - 716 AAA_29 PF13555.1 62 2.6e-05 17.0 0.1 1 1 7.9e-07 2.6e-05 17.0 0.1 16 41 502 526 496 539 0.77 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 9_1 - 193 AAA_29 PF13555.1 62 0.00036 13.4 0.1 1 1 2e-05 0.00065 12.6 0.1 17 41 18 40 10 60 0.79 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 5_3 - 217 AAA PF00004.24 132 3.1e-06 20.8 1.7 1 1 3.2e-07 4.2e-05 17.1 1.7 2 119 34 202 33 215 0.68 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 4_10 - 621 KR PF08659.5 181 0.001 12.1 1.9 1 3 0.016 2.1 1.3 0.0 146 176 224 254 219 258 0.86 # 8432 # 10294 # 1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 4_10 - 621 KR PF08659.5 181 0.001 12.1 1.9 2 3 0.0076 1 2.3 0.0 147 173 330 357 324 360 0.85 # 8432 # 10294 # 1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 4_10 - 621 KR PF08659.5 181 0.001 12.1 1.9 3 3 0.0022 0.28 4.1 0.1 28 61 392 424 380 450 0.82 # 8432 # 10294 # 1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 11_1 - 213 Ribosomal_L20 PF00453.13 108 0.00035 13.8 0.3 1 1 5.1e-06 0.00067 12.9 0.3 37 96 17 79 3 84 0.83 # 2 # 640 # -1 # ID=11_1;partial=10;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_7 - 857 GHMP_kinases_N PF00288.21 67 1.6e-13 43.9 0.1 1 1 1.2e-15 1.6e-13 43.9 0.1 2 66 582 648 581 649 0.92 # 6276 # 8846 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.393 6_5 - 716 DUF258 PF03193.11 161 7.8e-05 15.2 1.1 1 1 3e-06 0.0002 13.9 0.5 25 57 497 530 474 592 0.77 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 DUF258 PF03193.11 161 0.00016 14.2 0.0 1 1 4.2e-06 0.00027 13.4 0.0 26 58 20 53 3 89 0.79 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 4_7 - 253 AAA_31 PF13614.1 157 1.7e-11 37.5 2.0 1 1 1.7e-13 2.3e-11 37.2 0.4 1 155 2 159 2 161 0.79 # 4225 # 4983 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.290 5_3 - 217 NTPase_1 PF03266.10 168 0.00011 15.2 2.7 1 2 9e-06 0.00059 12.9 0.2 1 25 32 56 32 64 0.88 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 NTPase_1 PF03266.10 168 0.00011 15.2 2.7 2 2 0.012 0.76 2.7 0.2 66 144 123 204 103 214 0.73 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_5 - 716 NTPase_1 PF03266.10 168 0.0025 10.8 2.7 1 2 0.025 1.6 1.7 0.0 26 55 42 71 25 108 0.75 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_5 - 716 NTPase_1 PF03266.10 168 0.0025 10.8 2.7 2 2 0.00033 0.022 7.8 0.1 2 24 511 533 510 555 0.80 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_9 - 34 AAA_33 PF13671.1 143 0.00069 12.8 0.0 1 1 1.3e-05 0.00084 12.5 0.0 1 16 14 29 14 32 0.91 # 4555 # 4656 # -1 # ID=5_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 6_5 - 716 AAA_33 PF13671.1 143 0.00088 12.5 0.7 1 1 3.3e-05 0.0022 11.2 0.7 4 20 513 529 511 687 0.90 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_11 - 124 Ribosomal_S15 PF00312.17 83 0.00028 14.0 1.5 1 1 2.1e-06 0.00028 14.0 1.5 22 66 70 120 64 123 0.78 # 6722 # 7093 # -1 # ID=5_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_22 - 67 OB_RNB PF08206.6 58 0.0013 11.6 1.0 1 1 1.5e-05 0.002 10.9 1.0 7 42 12 51 7 65 0.68 # 22051 # 22251 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 5_3 - 217 FtsK_SpoIIIE PF01580.13 205 0.00086 12.1 0.1 1 1 2.5e-05 0.0017 11.2 0.1 26 59 17 51 10 60 0.81 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_4 - 297 FtsK_SpoIIIE PF01580.13 205 0.0015 11.3 0.0 1 1 3.3e-05 0.0022 10.8 0.0 58 174 27 140 25 181 0.80 # 3518 # 4408 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.333 6_5 - 716 ABC_tran PF00005.22 137 1.1e-34 112.9 0.9 1 1 5.3e-36 2.3e-34 111.9 0.9 1 137 498 648 498 648 0.86 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 ABC_tran PF00005.22 137 1.3e-32 106.3 0.0 1 1 4.2e-34 1.8e-32 105.8 0.0 1 137 20 163 20 163 0.94 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 9_1 - 193 ABC_tran PF00005.22 137 8.1e-13 42.2 0.0 1 1 4.9e-14 2.2e-12 40.8 0.0 4 136 16 144 14 145 0.66 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 2_12 - 95 dTMP_synthase PF02593.9 218 0.00092 11.9 0.0 1 1 7.8e-06 0.001 11.7 0.0 86 142 13 65 2 77 0.82 # 6729 # 7013 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 5_3 - 217 AAA_19 PF13245.1 76 0.00011 15.3 0.1 1 1 4.3e-06 0.00029 13.9 0.1 9 36 30 55 26 71 0.84 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_9 - 34 AAA_19 PF13245.1 76 0.00049 13.2 0.0 1 1 7.4e-06 0.00049 13.2 0.0 9 30 11 32 4 33 0.86 # 4555 # 4656 # -1 # ID=5_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 5_3 - 217 AAA_10 PF12846.2 304 1.3e-05 18.1 0.2 1 2 3.6e-06 0.00024 13.9 0.0 2 28 31 57 30 81 0.81 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_10 PF12846.2 304 1.3e-05 18.1 0.2 2 2 0.0089 0.59 2.7 0.0 218 270 150 202 91 213 0.77 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 6_5 - 716 AAA_10 PF12846.2 304 0.00019 14.2 1.2 1 1 7.5e-06 0.00049 12.8 0.8 5 24 512 531 508 547 0.85 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 9_1 - 193 SbcCD_C PF13558.1 90 3.8e-07 23.3 0.0 1 1 1.5e-07 6.7e-06 19.3 0.0 29 89 113 160 88 161 0.77 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 6_5 - 716 SbcCD_C PF13558.1 90 1.4e-05 18.3 0.6 1 1 1.5e-06 6.6e-05 16.1 0.6 17 84 605 658 592 663 0.72 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 5_3 - 217 SbcCD_C PF13558.1 90 3.9e-05 16.8 0.0 1 1 0.00023 0.01 9.1 0.0 64 87 153 176 106 179 0.73 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 1_17 - 170 DEAD PF00270.24 169 0.00071 12.4 0.0 1 1 5.4e-06 0.00071 12.4 0.0 45 89 78 140 12 167 0.69 # 18682 # 19191 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282 6_5 - 716 DUF815 PF05673.8 250 4e-05 15.9 0.0 1 1 5.7e-07 7.5e-05 15.0 0.0 55 124 510 584 499 600 0.80 # 4415 # 6562 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_18 - 208 AAA_11 PF13086.1 236 0.00036 13.4 1.5 1 1 3.4e-06 0.00045 13.1 1.5 89 176 29 117 6 127 0.68 # 12311 # 12934 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.378 5_9 - 34 CPT PF07931.7 174 0.00044 13.2 0.2 1 1 3.5e-06 0.00046 13.1 0.2 1 20 12 31 12 33 0.87 # 4555 # 4656 # -1 # ID=5_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 5_11 - 124 AAA_32 PF13654.1 509 0.00027 12.9 2.4 1 1 2.1e-06 0.00028 12.9 2.4 124 243 4 120 1 123 0.85 # 6722 # 7093 # -1 # ID=5_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 5_3 - 217 RNA_helicase PF00910.17 107 0.00031 14.2 0.0 1 1 5e-06 0.00066 13.2 0.0 1 26 33 58 33 87 0.84 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 NACHT PF05729.7 166 7.4e-05 15.7 0.7 1 2 2e-05 0.0013 11.7 0.2 3 26 33 56 31 63 0.86 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 NACHT PF05729.7 166 7.4e-05 15.7 0.7 2 2 0.011 0.73 2.8 0.0 90 122 158 190 83 210 0.77 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 9_1 - 193 NACHT PF05729.7 166 0.0011 12.0 0.0 1 2 0.0001 0.0066 9.4 0.0 4 21 26 43 24 89 0.83 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 9_1 - 193 NACHT PF05729.7 166 0.0011 12.0 0.0 2 2 0.06 3.9 0.4 0.0 91 128 141 174 132 181 0.77 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 5_3 - 217 AAA_25 PF13481.1 194 1e-05 18.3 0.1 1 2 4.2e-07 5.6e-05 15.9 0.0 29 63 26 62 13 77 0.80 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_25 PF13481.1 194 1e-05 18.3 0.1 2 2 0.033 4.4 -0.1 0.1 159 188 167 193 140 209 0.65 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_28 PF13521.1 163 0.00054 13.2 1.3 1 1 4.3e-06 0.00056 13.2 0.4 2 23 33 59 32 133 0.83 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_5 PF07728.9 139 3.7e-06 20.0 0.4 1 2 3.8e-06 0.00025 14.1 0.0 1 29 32 62 32 94 0.75 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 5_3 - 217 AAA_5 PF07728.9 139 3.7e-06 20.0 0.4 2 2 0.0046 0.3 4.1 0.0 23 76 109 163 92 188 0.79 # 1355 # 2005 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.438 9_1 - 193 AAA_5 PF07728.9 139 0.00094 12.2 0.1 1 2 0.00024 0.016 8.2 0.0 3 24 26 49 25 73 0.79 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 9_1 - 193 AAA_5 PF07728.9 139 0.00094 12.2 0.1 2 2 0.021 1.4 2.0 0.0 67 103 136 173 107 187 0.74 # 2 # 580 # -1 # ID=9_1;partial=10;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.237 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2456695f-1887-4dc6-83f9-23544b7fca06 # Target file: checkm_output/bins/pGCA_900088425.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_900088425.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2456695f-1887-4dc6-83f9-23544b7fca06 checkm_output/bins/pGCA_900088425.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:17 2020 # [ok]