# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 245 Methyltransf_12 PF08242.7 99 0.00032 13.0 0.2 1 1 1.9e-05 0.00086 11.6 0.0 2 56 36 88 35 114 0.83 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_17 - 1025 TIGR00392 TIGR00392 861 3.2e-288 949.9 16.5 1 1 9.5e-290 4.2e-288 949.5 16.5 10 857 7 825 1 828 0.97 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 3_1 - 245 RrnaAD PF00398.15 262 1.8e-75 245.0 4.4 1 1 4.6e-77 2e-75 244.9 4.4 1 262 1 244 1 244 0.97 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 264 MipZ PF09140.6 261 1.4e-06 19.3 0.3 1 1 4.3e-07 1.9e-05 15.6 0.3 2 43 3 45 2 156 0.70 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_1 - 264 YhjQ PF06564.7 244 2.7e-12 38.2 0.0 1 1 8.3e-14 3.6e-12 37.8 0.0 1 152 1 159 1 165 0.85 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 3_1 - 245 Methyltransf_18 PF12847.2 112 9.5e-08 24.4 0.0 1 1 3e-09 1.3e-07 23.9 0.0 3 66 32 91 30 151 0.76 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_11 PF08241.7 95 2.5e-06 19.7 0.0 1 1 1.1e-07 4.8e-06 18.8 0.0 2 60 36 94 35 99 0.91 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_24 - 225 AAA_17 PF13207.1 121 1.7e-06 20.6 1.0 1 1 1.7e-07 2.5e-06 20.1 1.0 23 113 24 122 20 206 0.85 # 26937 # 27611 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_15 - 225 AAA_17 PF13207.1 121 2.3e-06 20.2 1.3 1 1 2.2e-07 3.2e-06 19.7 1.3 23 113 24 122 20 205 0.85 # 13762 # 14436 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_1 - 264 AAA_17 PF13207.1 121 0.00029 13.4 0.4 1 1 6.6e-05 0.00096 11.8 0.1 9 64 12 71 10 149 0.52 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_21 - 848 AAA_21 PF13304.1 303 2.2e-07 22.8 64.4 1 3 0.058 2.6 -0.4 2.2 127 192 14 76 2 93 0.55 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_21 - 848 AAA_21 PF13304.1 303 2.2e-07 22.8 64.4 2 3 5.7e-06 0.00025 12.8 18.1 1 207 99 296 99 311 0.57 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_21 - 848 AAA_21 PF13304.1 303 2.2e-07 22.8 64.4 3 3 0.00048 0.021 6.5 36.0 15 302 458 676 248 677 0.67 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_27 - 797 Helicase_C PF00271.26 78 2.5e-05 15.9 0.0 1 1 1.9e-06 8.2e-05 14.2 0.0 34 78 482 534 430 534 0.86 # 30539 # 32929 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_1 - 264 ArsA_ATPase PF02374.10 305 4.4e-11 34.0 0.3 1 1 2.4e-12 1.1e-10 32.8 0.3 3 137 3 134 1 137 0.70 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_21 - 848 SMC_N PF02463.14 220 0.00022 12.2 0.2 1 2 4.9e-06 0.00022 12.2 0.2 17 41 90 114 80 136 0.82 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_21 - 848 SMC_N PF02463.14 220 0.00022 12.2 0.2 2 2 0.023 0.99 0.3 29.4 135 203 290 676 204 688 0.73 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_1 - 264 VirC1 PF07015.6 231 4.2e-05 14.4 0.2 1 2 3.9e-06 0.00017 12.4 0.0 1 39 1 40 1 53 0.76 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_1 - 264 VirC1 PF07015.6 231 4.2e-05 14.4 0.2 2 2 0.073 3.2 -1.6 0.0 83 111 123 152 95 165 0.75 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_1 - 264 Fer4_NifH PF00142.13 273 5.1e-06 17.5 0.0 1 1 2.2e-07 9.5e-06 16.6 0.0 8 50 10 53 3 84 0.78 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_21 - 848 AAA_16 PF13191.1 185 0.00014 13.6 0.0 1 2 0.00013 0.0057 8.4 0.0 24 48 97 121 89 210 0.85 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_21 - 848 AAA_16 PF13191.1 185 0.00014 13.6 0.0 2 2 0.014 0.6 1.8 0.1 136 184 617 667 485 668 0.77 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_21 - 848 AAA_23 PF13476.1 202 1.7e-06 20.2 20.0 1 1 3.9e-08 1.7e-06 20.2 20.0 9 197 86 305 71 345 0.53 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_1 - 264 AAA_18 PF13238.1 129 0.00012 14.2 0.0 1 1 8.9e-06 0.00039 12.5 0.0 8 103 12 134 11 138 0.71 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_21 - 848 AAA_13 PF13166.1 712 9.5e-39 125.0 59.5 1 2 2.2e-40 9.5e-39 125.0 59.5 9 602 90 701 83 735 0.74 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_21 - 848 AAA_13 PF13166.1 712 9.5e-39 125.0 59.5 2 2 0.022 0.95 -0.6 2.1 359 452 756 844 694 847 0.47 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_27 - 797 SecA_DEAD PF07517.9 266 1.5e-97 317.7 1.3 1 1 3.4e-99 1.5e-97 317.7 1.3 7 265 8 385 2 386 0.96 # 30539 # 32929 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_1 - 264 CbiA PF01656.18 195 4.4e-31 99.5 0.4 1 1 1.2e-32 5.5e-31 99.2 0.4 1 193 4 225 4 227 0.80 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_9 - 796 Ribosomal_S13 PF00416.17 107 0.00088 11.5 3.7 1 2 0.0031 0.14 4.5 0.2 11 55 89 135 79 162 0.72 # 6963 # 9350 # -1 # ID=1_9;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_9 - 796 Ribosomal_S13 PF00416.17 107 0.00088 11.5 3.7 2 2 0.00046 0.02 7.2 0.5 5 60 627 681 623 708 0.85 # 6963 # 9350 # -1 # ID=1_9;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.351 3_1 - 245 Methyltransf_25 PF13649.1 101 0.0003 12.9 0.0 1 1 1.5e-05 0.00064 11.9 0.0 1 69 34 96 34 121 0.83 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_17 - 1025 tRNA-synt_1 PF00133.17 601 1.2e-242 797.9 4.6 1 1 4.6e-244 2e-242 797.1 4.6 2 601 12 625 11 625 0.99 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_17 - 1025 tRNA-synt_1g PF09334.6 391 1e-25 81.9 7.9 1 4 3.1e-12 1.4e-10 32.1 0.2 10 135 44 188 41 199 0.75 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_17 - 1025 tRNA-synt_1g PF09334.6 391 1e-25 81.9 7.9 2 4 0.03 1.3 -0.8 0.0 47 118 303 374 299 379 0.90 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_17 - 1025 tRNA-synt_1g PF09334.6 391 1e-25 81.9 7.9 3 4 2.1e-05 0.00091 9.6 0.2 164 238 377 450 364 461 0.80 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_17 - 1025 tRNA-synt_1g PF09334.6 391 1e-25 81.9 7.9 4 4 1e-14 4.4e-13 40.3 0.3 244 387 508 644 497 646 0.75 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_21 - 848 AAA_29 PF13555.1 62 0.00012 13.3 0.6 1 1 1.1e-05 0.00048 11.4 0.6 22 38 98 112 68 127 0.71 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_17 - 1025 tRNA-synt_1_2 PF13603.1 185 5.9e-05 14.1 0.0 1 1 4.4e-06 0.00019 12.5 0.0 103 144 297 338 199 368 0.71 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 3_1 - 245 PCMT PF01135.14 210 1.6e-06 19.5 0.0 1 1 1e-07 4.6e-06 18.0 0.0 53 126 10 80 3 86 0.86 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_1 - 264 AAA_31 PF13614.1 157 1.7e-16 52.3 0.4 1 1 1e-17 4.5e-16 50.9 0.4 2 150 3 156 2 163 0.81 # 570 # 1361 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 3_1 - 245 Methyltransf_26 PF13659.1 117 6.7e-09 27.6 0.0 1 1 2e-10 8.8e-09 27.2 0.0 2 81 32 105 31 148 0.90 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 MTS PF05175.9 170 1.4e-05 16.3 0.0 1 1 4.8e-07 2.1e-05 15.7 0.0 25 113 24 109 14 125 0.83 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_17 - 1025 tRNA-synt_1f PF01921.13 360 8.1e-09 26.3 0.0 1 2 0.013 0.58 0.4 0.0 8 59 18 70 14 82 0.79 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_17 - 1025 tRNA-synt_1f PF01921.13 360 8.1e-09 26.3 0.0 2 2 2.2e-09 9.6e-08 22.7 0.0 273 335 576 638 539 668 0.72 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_21 - 848 ABC_tran PF00005.22 137 0.042 5.9 20.3 1 2 7.3e-05 0.0032 9.5 2.4 12 42 98 127 89 345 0.80 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_21 - 848 ABC_tran PF00005.22 137 0.042 5.9 20.3 2 2 0.011 0.46 2.5 6.8 44 125 545 625 391 642 0.70 # 22944 # 25487 # -1 # ID=1_21;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.267 1_17 - 1025 tRNA-synt_1e PF01406.14 301 8.1e-08 23.4 0.0 1 2 0.019 0.85 0.3 0.0 9 48 34 73 27 75 0.83 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_17 - 1025 tRNA-synt_1e PF01406.14 301 8.1e-08 23.4 0.0 2 2 2.7e-08 1.2e-06 19.5 0.0 242 299 573 632 556 634 0.75 # 14838 # 17912 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.288 3_1 - 245 NodS PF05401.6 201 1.3e-05 16.4 0.0 1 1 4.8e-07 2.1e-05 15.7 0.0 44 107 31 94 9 115 0.84 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_31 PF13847.1 152 7.6e-06 17.3 2.8 1 1 2.9e-07 1.3e-05 16.6 2.6 2 76 29 98 28 225 0.74 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 DOT1 PF08123.8 205 1.4e-05 16.2 1.3 1 2 1.9e-06 8.2e-05 13.7 0.0 29 91 17 77 13 116 0.83 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 DOT1 PF08123.8 205 1.4e-05 16.2 1.3 2 2 0.016 0.68 0.9 0.6 78 133 180 229 169 236 0.57 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_27 - 797 DEAD PF00270.24 169 4e-11 34.4 1.2 1 1 3.4e-12 1.5e-10 32.5 0.0 10 132 88 217 80 236 0.81 # 30539 # 32929 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 3_1 - 245 TIGR00755 TIGR00755 256 1e-47 154.0 1.2 1 1 2.9e-49 1.3e-47 153.6 1.2 6 254 7 237 3 239 0.88 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_23 PF13489.1 161 2.3e-05 15.9 0.0 1 1 1.5e-06 6.4e-05 14.5 0.0 11 67 17 78 8 119 0.71 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_31 - 398 TIGR00967 TIGR00967 414 9e-40 128.1 30.9 1 1 3e-41 1.3e-39 127.6 30.9 2 409 12 385 11 390 0.81 # 36566 # 37759 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 3_1 - 245 Methyltransf_4 PF02390.12 197 7.6e-06 16.8 0.3 1 2 1.7e-07 7.6e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_4 PF02390.12 197 7.6e-06 16.8 0.3 2 2 0.093 4.1 -1.9 0.1 136 159 187 207 168 229 0.62 # 437 # 1171 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e6d2f57b-fe8b-4b8e-aabe-59c0a3f9c672 # Target file: checkm_output/bins/pGCA_900086615.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_900086615.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e6d2f57b-fe8b-4b8e-aabe-59c0a3f9c672 checkm_output/bins/pGCA_900086615.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:16 2020 # [ok]