# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_49 - 344 Mg_chelatase PF01078.16 207 4e-05 15.1 0.0 1 1 1.3e-06 8.3e-05 14.0 0.0 18 56 169 207 155 217 0.85 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 cobW PF02492.14 178 1.5e-05 16.8 0.0 1 1 7.8e-07 2.5e-05 16.0 0.0 3 34 507 537 505 542 0.85 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 cobW PF02492.14 178 0.0004 12.1 0.0 1 1 2.2e-05 0.00069 11.3 0.0 4 50 177 220 175 241 0.78 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 IstB_IS21 PF01695.12 178 1e-05 17.3 0.0 1 1 6.1e-07 1.9e-05 16.4 0.0 42 67 168 193 124 210 0.62 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_45 - 985 IstB_IS21 PF01695.12 178 1.1e-05 17.1 0.1 1 1 8.4e-07 2.6e-05 15.9 0.1 46 125 510 595 482 604 0.66 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 985 UvrD_C_2 PF13538.1 104 6.7e-15 47.4 0.1 1 1 4.8e-16 3e-14 45.3 0.1 2 100 814 911 813 915 0.83 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_44 - 513 DUF87 PF01935.12 229 2.2e-10 32.9 0.0 1 1 1.8e-11 3.7e-10 32.2 0.0 11 77 115 177 102 231 0.80 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_56 - 883 DUF87 PF01935.12 229 5.1e-06 18.7 0.1 1 2 0.079 1.7 0.6 0.0 146 207 139 196 73 201 0.81 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_56 - 883 DUF87 PF01935.12 229 5.1e-06 18.7 0.1 2 2 3.2e-06 6.7e-05 15.0 0.0 25 48 506 529 505 541 0.87 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 DUF87 PF01935.12 229 0.00029 12.9 0.1 1 1 2.4e-05 0.00049 12.2 0.1 23 44 173 194 155 201 0.89 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 AAA_22 PF13401.1 131 1.9e-05 17.1 0.0 1 1 2.7e-06 8.6e-05 15.0 0.0 4 44 504 539 501 575 0.83 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 AAA_22 PF13401.1 131 9.1e-05 14.9 0.0 1 1 5.4e-06 0.00017 14.0 0.0 3 25 172 194 168 223 0.87 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 ATP_bind_1 PF03029.12 238 0.00015 13.6 0.1 1 1 4.2e-06 0.00027 12.8 0.1 1 25 178 202 178 206 0.88 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_3 - 363 DNA_methylase PF00145.12 335 7.7e-06 17.4 0.0 1 1 2.1e-07 1.3e-05 16.6 0.0 30 110 115 211 101 218 0.82 # 740 # 1828 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.641 1_49 - 344 AAA_17 PF13207.1 121 4.8e-06 19.7 0.0 1 1 1.8e-07 1.2e-05 18.5 0.0 2 21 176 195 175 264 0.86 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 Miro PF08477.8 119 0.00017 14.4 0.0 1 1 6.7e-06 0.00042 13.1 0.0 3 25 508 530 506 581 0.78 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 MobB PF03205.9 140 2.7e-05 16.1 0.8 1 1 2.2e-06 6.9e-05 14.8 0.1 3 22 176 195 174 215 0.81 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 MobB PF03205.9 140 0.00053 12.0 0.1 1 1 5.1e-05 0.0016 10.4 0.0 4 34 508 538 506 563 0.87 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_41 - 235 ArsA_ATPase PF02374.10 305 0.00052 11.3 0.0 1 2 0.08 5.1 -1.8 0.0 10 19 10 19 5 22 0.86 # 31785 # 32489 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 1_41 - 235 ArsA_ATPase PF02374.10 305 0.00052 11.3 0.0 2 2 2.2e-05 0.0014 9.9 0.0 205 253 95 144 47 167 0.73 # 31785 # 32489 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 1_45 - 985 PhoH PF02562.11 205 1.9e-09 29.2 1.1 1 2 4.2e-06 0.00026 12.5 0.1 7 39 498 531 493 545 0.76 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 985 PhoH PF02562.11 205 1.9e-09 29.2 1.1 2 2 8.4e-07 5.3e-05 14.8 0.1 119 161 578 621 563 647 0.85 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_49 - 344 T2SE PF00437.15 272 6.8e-50 161.7 0.0 1 1 2.6e-51 8.1e-50 161.4 0.0 3 270 24 323 22 325 0.94 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 T2SE PF00437.15 272 6e-06 17.5 0.0 1 1 3.9e-07 1.2e-05 16.5 0.0 130 160 506 536 498 539 0.87 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 Zeta_toxin PF06414.7 201 0.00013 13.4 0.1 1 1 1.3e-05 0.0004 11.8 0.1 13 39 170 196 159 209 0.82 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 Zeta_toxin PF06414.7 201 0.00023 12.5 0.0 1 1 1.6e-05 0.00049 11.5 0.0 19 42 507 530 496 561 0.75 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_56 - 883 Arch_ATPase PF01637.13 234 9.2e-05 14.4 0.0 1 1 3.6e-06 0.00022 13.2 0.0 21 56 505 540 496 549 0.87 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 AAA_16 PF13191.1 185 1.6e-05 17.2 0.7 1 1 1.1e-06 3.4e-05 16.1 0.2 21 45 170 194 151 199 0.83 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 AAA_16 PF13191.1 185 3.3e-05 16.2 0.0 1 1 3.3e-06 0.0001 14.5 0.0 22 50 502 530 495 591 0.87 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_56 - 883 AAA_23 PF13476.1 202 1e-06 21.4 0.1 1 1 1.2e-07 2.6e-06 20.1 0.0 18 39 503 524 488 526 0.86 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_44 - 513 AAA_23 PF13476.1 202 0.00034 13.2 0.0 1 1 3e-05 0.00064 12.3 0.0 24 53 129 158 123 278 0.65 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_49 - 344 AAA_23 PF13476.1 202 0.00067 12.2 0.5 1 1 5.2e-05 0.0011 11.5 0.3 22 40 176 194 147 197 0.85 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 AAA_18 PF13238.1 129 4.4e-06 19.3 0.0 1 1 1.5e-07 9.7e-06 18.2 0.0 1 21 176 196 176 225 0.76 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_41 - 235 CbiA PF01656.18 195 1.3e-06 20.2 0.8 1 2 0.00011 0.0023 9.6 0.0 2 20 4 22 4 23 0.91 # 31785 # 32489 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 1_41 - 235 CbiA PF01656.18 195 1.3e-06 20.2 0.8 2 2 0.00025 0.0052 8.4 0.2 120 168 99 147 35 171 0.77 # 31785 # 32489 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 1_44 - 513 CbiA PF01656.18 195 0.00012 13.7 0.0 1 1 1e-05 0.00021 13.0 0.0 4 50 129 180 127 286 0.75 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_56 - 883 CbiA PF01656.18 195 0.00055 11.6 0.0 1 1 6.7e-05 0.0014 10.3 0.0 6 56 511 562 507 638 0.78 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_56 - 883 AAA_29 PF13555.1 62 2.8e-07 22.3 0.0 1 1 1.9e-08 5.8e-07 21.3 0.0 7 45 487 526 485 527 0.76 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 AAA_29 PF13555.1 62 4.2e-05 15.4 0.1 1 1 2.5e-06 7.8e-05 14.5 0.1 13 39 163 189 152 196 0.75 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 MMR_HSR1 PF01926.18 116 5.6e-05 15.4 0.0 1 1 2.2e-06 0.00014 14.1 0.0 3 22 508 527 506 586 0.87 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_56 - 883 DUF258 PF03193.11 161 2e-05 16.1 0.0 1 1 6.8e-07 4.3e-05 15.0 0.0 38 60 507 529 493 555 0.81 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_44 - 513 TraG-D_C PF12696.2 128 1.2e-22 72.4 0.0 1 1 3.3e-24 2.1e-22 71.6 0.0 2 127 350 472 349 473 0.85 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_49 - 344 AAA_33 PF13671.1 143 9.6e-05 14.6 0.0 1 1 2.2e-06 0.00014 14.0 0.0 3 32 177 209 176 297 0.82 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_45 - 985 AAA_30 PF13604.1 196 1.7e-52 170.1 5.1 1 1 6.7e-54 4.2e-52 168.8 5.1 2 190 495 675 494 681 0.96 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_56 - 883 FtsK_SpoIIIE PF01580.13 205 8.6e-08 24.1 0.0 1 1 8.8e-09 1.9e-07 23.0 0.0 21 61 484 527 463 540 0.72 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_44 - 513 FtsK_SpoIIIE PF01580.13 205 8.7e-06 17.6 0.0 1 1 8e-07 1.7e-05 16.6 0.0 39 80 119 162 96 170 0.80 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_49 - 344 FtsK_SpoIIIE PF01580.13 205 1e-05 17.3 0.0 1 1 9.1e-07 1.9e-05 16.4 0.0 34 61 168 196 151 206 0.81 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 ABC_tran PF00005.22 137 1.1e-06 21.3 0.0 1 1 6e-08 1.9e-06 20.5 0.0 7 47 169 210 166 233 0.75 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 ABC_tran PF00005.22 137 1.1e-06 21.2 0.0 1 1 8.6e-08 2.7e-06 20.0 0.0 13 44 506 537 495 625 0.77 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 AAA_19 PF13245.1 76 0.00013 14.0 0.0 1 1 4.7e-06 0.0003 12.8 0.0 5 48 168 206 165 231 0.71 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 AAA_10 PF12846.2 304 2.2e-32 104.9 0.0 1 2 0.06 1.3 0.6 0.0 47 100 303 365 289 407 0.81 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_56 - 883 AAA_10 PF12846.2 304 2.2e-32 104.9 0.0 2 2 9.2e-33 1.9e-31 101.8 0.0 2 303 505 799 504 800 0.89 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_44 - 513 AAA_10 PF12846.2 304 1.7e-11 36.3 0.0 1 1 1.7e-10 3.7e-09 28.6 0.0 3 289 126 416 124 432 0.66 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_49 - 344 AAA_10 PF12846.2 304 5.2e-05 15.0 0.0 1 1 4e-06 8.3e-05 14.3 0.0 2 23 174 195 173 201 0.90 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 ResIII PF04851.10 184 1e-05 17.7 0.0 1 1 2.4e-07 1.5e-05 17.1 0.0 16 69 154 219 132 236 0.83 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_45 - 985 Viral_helicase1 PF01443.13 234 9.2e-17 53.5 0.3 1 2 1e-09 6.3e-08 24.6 0.0 3 115 516 631 514 691 0.76 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 985 Viral_helicase1 PF01443.13 234 9.2e-17 53.5 0.3 2 2 2.8e-10 1.7e-08 26.4 0.1 157 234 845 916 789 916 0.65 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_49 - 344 PduV-EutP PF10662.4 143 0.00054 11.7 0.0 1 1 1.7e-05 0.0011 10.8 0.0 3 23 175 195 173 215 0.86 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 DEAD PF00270.24 169 3.6e-05 15.6 0.0 1 1 1.3e-06 8.1e-05 14.4 0.0 11 68 170 224 161 244 0.73 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_44 - 513 TrwB_AAD_bind PF10412.4 386 4.7e-134 439.0 0.0 1 1 2.6e-135 5.5e-134 438.8 0.0 1 385 110 491 110 492 0.98 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_56 - 883 TrwB_AAD_bind PF10412.4 386 3.1e-08 24.8 0.0 1 1 4.5e-09 9.4e-08 23.2 0.0 15 53 504 542 499 552 0.91 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 TrwB_AAD_bind PF10412.4 386 0.00021 12.2 0.1 1 1 1.5e-05 0.00031 11.6 0.1 13 39 171 197 161 209 0.85 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_44 - 513 T4SS-DNA_transf PF02534.9 469 1e-14 46.2 0.0 1 2 4.9e-06 0.00031 11.6 0.0 44 176 124 246 93 279 0.75 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_44 - 513 T4SS-DNA_transf PF02534.9 469 1e-14 46.2 0.0 2 2 2.2e-12 1.4e-10 32.5 0.0 264 429 312 476 297 488 0.77 # 33677 # 35215 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_45 - 985 PIF1 PF05970.9 364 0.00018 12.8 0.7 1 1 1.8e-05 0.0012 10.1 0.5 2 65 495 556 494 665 0.83 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_49 - 344 GTP_EFTU PF00009.22 188 2.5e-05 16.0 0.0 1 1 6.1e-07 3.9e-05 15.4 0.0 2 32 172 202 171 220 0.79 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 UPF0079 PF02367.12 123 0.00051 11.9 0.1 1 1 1.5e-05 0.00094 11.1 0.1 9 39 167 197 163 205 0.82 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 NACHT PF05729.7 166 0.00016 13.6 0.3 1 1 1.2e-05 0.00037 12.4 0.1 2 22 175 195 174 199 0.88 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 NACHT PF05729.7 166 0.00035 12.5 0.0 1 1 3.5e-05 0.0011 10.9 0.0 4 23 508 527 506 534 0.88 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 AAA_25 PF13481.1 194 6.1e-05 14.7 0.0 1 1 3e-06 9.4e-05 14.1 0.0 35 64 175 204 140 298 0.73 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_56 - 883 AAA_25 PF13481.1 194 0.00053 11.7 0.0 1 1 5.1e-05 0.0016 10.1 0.0 31 55 503 526 493 560 0.84 # 46329 # 48977 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_49 - 344 AAA_28 PF13521.1 163 0.00058 12.1 1.5 1 2 3.2e-05 0.002 10.4 0.8 1 20 175 194 175 212 0.87 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_49 - 344 AAA_28 PF13521.1 163 0.00058 12.1 1.5 2 2 0.091 5.8 -0.9 0.0 79 119 213 256 207 263 0.73 # 40146 # 41177 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.586 1_45 - 985 Herpes_Helicase PF02689.9 819 2.9e-06 17.5 0.1 1 2 0.0021 0.13 2.0 0.0 173 208 556 591 541 599 0.77 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 985 Herpes_Helicase PF02689.9 819 2.9e-06 17.5 0.1 2 2 9.3e-07 5.9e-05 13.2 0.0 742 786 870 915 846 923 0.83 # 35216 # 38170 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eccf552c-dc93-4f70-bff2-bbf42d1c11c7 # Target file: checkm_output/bins/pGCA_002741075.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002741075.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eccf552c-dc93-4f70-bff2-bbf42d1c11c7 checkm_output/bins/pGCA_002741075.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:12 2020 # [ok]