# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_59 - 238 MipZ PF09140.6 261 2.8e-06 18.8 0.0 1 1 6.3e-08 3.9e-06 18.3 0.0 9 139 5 137 1 175 0.75 # 46650 # 47363 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.660 1_37 - 1732 AAA_22 PF13401.1 131 1.6e-06 20.5 0.0 1 2 0.063 3.9 -0.1 0.0 47 96 457 513 425 526 0.81 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_37 - 1732 AAA_22 PF13401.1 131 1.6e-06 20.5 0.0 2 2 6.1e-07 3.8e-05 16.1 0.0 3 127 589 710 586 713 0.81 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_20 - 136 ATP_bind_2 PF03668.10 284 8.9e-17 53.2 0.0 1 1 1.7e-18 1.1e-16 53.0 0.0 165 283 5 123 2 124 0.85 # 16241 # 16648 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.735 1_19 - 505 AAA_17 PF13207.1 121 8.7e-05 15.6 0.5 1 1 3.5e-06 0.00022 14.3 0.4 2 24 123 148 122 213 0.79 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_37 - 1732 PhoH PF02562.11 205 1.4e-05 16.7 0.1 1 2 4.5e-06 0.00014 13.4 0.0 6 90 575 660 572 672 0.84 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_37 - 1732 PhoH PF02562.11 205 1.4e-05 16.7 0.1 2 2 0.037 1.1 0.6 0.0 122 161 673 713 668 746 0.79 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_54 - 191 PhoH PF02562.11 205 0.00057 11.4 0.0 1 1 2.3e-05 0.00071 11.0 0.0 54 92 61 99 28 123 0.89 # 43780 # 44352 # 1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.709 1_31 - 141 Ribosomal_S19 PF00203.16 81 0.00069 11.5 0.0 1 1 1.7e-05 0.0011 10.9 0.0 33 57 28 52 19 54 0.87 # 23060 # 23482 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_19 - 505 AAA_16 PF13191.1 185 0.0015 10.8 0.1 1 2 2.4e-05 0.0015 10.8 0.1 25 45 121 141 104 168 0.87 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 AAA_16 PF13191.1 185 0.0015 10.8 0.1 2 2 0.095 5.9 -1.0 0.6 167 183 216 232 193 313 0.69 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 AAA_18 PF13238.1 129 0.00012 14.7 0.1 1 1 3.8e-06 0.00023 13.7 0.1 1 29 123 161 123 171 0.80 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 AAA_29 PF13555.1 62 0.00012 13.8 0.1 1 1 3.9e-06 0.00024 12.9 0.1 24 48 121 145 116 152 0.83 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 MMR_HSR1 PF01926.18 116 0.00034 12.8 0.0 1 2 7.2e-05 0.0045 9.2 0.0 2 33 123 160 122 186 0.85 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 MMR_HSR1 PF01926.18 116 0.00034 12.8 0.0 2 2 0.022 1.4 1.2 0.0 48 88 352 403 286 441 0.70 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_40 - 566 TraG-D_C PF12696.2 128 9.6e-24 75.9 0.0 1 1 2.7e-25 1.7e-23 75.2 0.0 1 126 393 508 393 510 0.85 # 34965 # 36662 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.681 1_37 - 1732 AAA_30 PF13604.1 196 2.3e-50 163.1 0.8 1 1 3.7e-52 2.3e-50 163.1 0.8 3 193 575 774 573 776 0.90 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_19 - 505 FtsK_SpoIIIE PF01580.13 205 1.9e-05 16.4 1.7 1 2 5.5e-06 0.00034 12.3 0.1 35 63 117 145 104 154 0.89 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 FtsK_SpoIIIE PF01580.13 205 1.9e-05 16.4 1.7 2 2 0.0063 0.39 2.3 0.2 98 203 233 407 215 409 0.50 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_37 - 1732 AAA_19 PF13245.1 76 2.1e-08 26.1 2.0 1 2 1.1e-08 3.4e-07 22.2 0.2 9 60 589 637 580 651 0.84 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_37 - 1732 AAA_19 PF13245.1 76 2.1e-08 26.1 2.0 2 2 0.026 0.82 1.8 0.1 24 62 782 815 781 833 0.70 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_19 - 505 AAA_19 PF13245.1 76 2.2e-05 16.5 0.2 1 1 2.4e-06 7.4e-05 14.8 0.2 10 49 120 155 113 164 0.86 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 AAA_10 PF12846.2 304 9.4e-54 175.0 0.0 1 1 1.8e-55 1.1e-53 174.8 0.0 1 304 120 456 120 456 0.91 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_19 - 505 DUF815 PF05673.8 250 0.0001 13.5 0.0 1 1 2.7e-06 0.00017 12.8 0.0 54 78 121 145 115 156 0.84 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_40 - 566 TrwB_AAD_bind PF10412.4 386 1.5e-14 45.5 0.0 1 1 1.1e-15 3.3e-14 44.4 0.0 76 380 207 523 204 528 0.80 # 34965 # 36662 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.681 1_19 - 505 TrwB_AAD_bind PF10412.4 386 0.00021 12.2 0.0 1 1 2.1e-05 0.00064 10.6 0.0 17 57 122 163 117 189 0.81 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 1_37 - 1732 AAA_11 PF13086.1 236 0.0008 11.2 10.1 1 2 0.0023 0.14 3.8 0.0 4 104 576 665 573 671 0.69 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_37 - 1732 AAA_11 PF13086.1 236 0.0008 11.2 10.1 2 2 4.1e-06 0.00025 12.8 0.2 192 231 670 712 652 714 0.73 # 28438 # 33633 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.705 1_40 - 566 T4SS-DNA_transf PF02534.9 469 1.4e-19 62.2 0.0 1 1 1e-20 6.3e-19 60.0 0.0 46 451 141 535 114 552 0.82 # 34965 # 36662 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.681 1_19 - 505 ArgK PF03308.11 267 5.5e-05 14.2 0.0 1 1 1.7e-06 0.00011 13.3 0.0 32 64 123 154 117 162 0.86 # 14585 # 16099 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.681 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4c966737-0397-48d0-aa06-92ce8cf2532a # Target file: checkm_output/bins/pGCA_002591335.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002591335.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4c966737-0397-48d0-aa06-92ce8cf2532a checkm_output/bins/pGCA_002591335.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:07 2020 # [ok]