# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_11 - 193 RuvB_C PF05491.8 76 0.00039 12.3 0.4 1 2 0.038 2.3 0.2 0.1 55 67 121 133 117 139 0.82 # 14698 # 15276 # 1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 3_11 - 193 RuvB_C PF05491.8 76 0.00039 12.3 0.4 2 2 8.6e-05 0.0052 8.7 0.0 6 43 145 178 142 182 0.86 # 14698 # 15276 # 1 # ID=3_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 4_8 - 264 MipZ PF09140.6 261 1.9e-06 19.3 0.3 1 1 4.3e-07 2.6e-05 15.6 0.3 2 43 3 45 2 156 0.70 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 4_8 - 264 YhjQ PF06564.7 244 3.8e-12 38.2 0.0 1 1 8.3e-14 5.1e-12 37.8 0.0 1 152 1 159 1 165 0.85 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_18 - 225 AAA_17 PF13207.1 121 2.4e-06 20.6 1.0 1 1 1.7e-07 3.4e-06 20.1 1.0 23 113 24 122 20 206 0.85 # 15028 # 15702 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_10 - 225 AAA_17 PF13207.1 121 7.6e-06 19.0 1.1 1 1 5.5e-07 1.1e-05 18.5 1.1 23 113 24 122 20 205 0.84 # 8767 # 9441 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 4_8 - 264 AAA_17 PF13207.1 121 0.00041 13.4 0.4 1 1 6.6e-05 0.0013 11.8 0.1 9 64 12 71 10 149 0.52 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 3_6 - 797 Helicase_C PF00271.26 78 3.4e-05 15.9 0.0 1 1 1.9e-06 0.00011 14.2 0.0 34 78 482 534 430 534 0.86 # 6858 # 9248 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 4_8 - 264 ArsA_ATPase PF02374.10 305 6.1e-11 34.0 0.3 1 1 2.4e-12 1.5e-10 32.8 0.3 3 137 3 134 1 137 0.70 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 4_8 - 264 VirC1 PF07015.6 231 5.9e-05 14.4 0.2 1 2 3.9e-06 0.00024 12.4 0.0 1 39 1 40 1 53 0.76 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 4_8 - 264 VirC1 PF07015.6 231 5.9e-05 14.4 0.2 2 2 0.073 4.4 -1.6 0.0 83 111 123 152 95 165 0.75 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 4_8 - 264 Fer4_NifH PF00142.13 273 7e-06 17.5 0.0 1 1 2.2e-07 1.3e-05 16.6 0.0 8 50 10 53 3 84 0.78 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 4_8 - 264 AAA_18 PF13238.1 129 0.00017 14.2 0.0 1 1 8.9e-06 0.00054 12.5 0.0 8 103 12 134 11 138 0.71 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 3_6 - 797 SecA_DEAD PF07517.9 266 2.1e-97 317.7 1.3 1 1 3.4e-99 2.1e-97 317.7 1.3 7 265 8 385 2 386 0.96 # 6858 # 9248 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 4_8 - 264 CbiA PF01656.18 195 6.1e-31 99.5 0.4 1 1 1.2e-32 7.6e-31 99.2 0.4 1 193 4 225 4 227 0.80 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_7 - 796 Ribosomal_S13 PF00416.17 107 0.0012 11.5 3.7 1 2 0.0031 0.19 4.5 0.2 11 55 89 135 79 162 0.72 # 4368 # 6755 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.351 2_7 - 796 Ribosomal_S13 PF00416.17 107 0.0012 11.5 3.7 2 2 0.00046 0.028 7.2 0.5 5 60 627 681 623 708 0.85 # 4368 # 6755 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_14 - 418 tRNA-synt_1b PF00579.20 292 4.3e-86 280.8 0.0 1 1 8.9e-88 5.5e-86 280.4 0.0 3 292 28 322 26 322 0.97 # 15216 # 16469 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 4_8 - 264 AAA_31 PF13614.1 157 2.3e-16 52.3 0.4 1 1 1e-17 6.2e-16 50.9 0.4 2 150 3 156 2 163 0.81 # 7833 # 8624 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 3_6 - 797 DEAD PF00270.24 169 5.3e-11 34.5 1.2 1 1 3.4e-12 2.1e-10 32.5 0.0 10 132 88 217 80 236 0.81 # 6858 # 9248 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 3_2 - 398 TIGR00967 TIGR00967 414 7.7e-40 128.8 31.0 1 1 1.9e-41 1.1e-39 128.3 31.0 2 409 12 385 11 390 0.81 # 2028 # 3221 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.266 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eee4f37d-4806-4c85-ac4b-d88f7591bad4 # Target file: checkm_output/bins/pGCA_002591175.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002591175.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eee4f37d-4806-4c85-ac4b-d88f7591bad4 checkm_output/bins/pGCA_002591175.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:05 2020 # [ok]