# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_6 - 922 UPF0020 PF01170.13 180 8.5e-05 15.4 0.0 1 1 1.9e-06 0.00025 13.9 0.0 31 81 378 446 372 524 0.84 # 5083 # 7848 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 5_4 - 248 cobW PF02492.14 178 0.00011 14.9 0.5 1 1 2.3e-06 0.00029 13.5 0.2 2 22 33 53 32 67 0.82 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_11 - 91 RrnaAD PF00398.15 262 0.00037 12.8 0.0 1 1 3.8e-06 0.00048 12.4 0.0 17 43 60 86 49 88 0.91 # 6317 # 6589 # 1 # ID=5_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_25 - 206 Seryl_tRNA_N PF02403.17 108 0.00073 12.8 7.0 1 1 2.8e-06 0.00036 13.8 4.4 36 99 28 93 24 98 0.66 # 18364 # 18981 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.353 2_19 - 398 ABC_ATPase PF09818.4 448 5e-06 18.5 0.3 1 2 0.0018 0.23 3.1 0.1 241 266 50 76 39 84 0.88 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 ABC_ATPase PF09818.4 448 5e-06 18.5 0.3 2 2 1.7e-06 0.00022 13.1 0.0 322 372 164 213 157 253 0.82 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 IstB_IS21 PF01695.12 178 4.9e-06 19.3 0.2 1 2 1.4e-05 0.00087 12.0 0.0 52 76 36 61 29 101 0.84 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 IstB_IS21 PF01695.12 178 4.9e-06 19.3 0.2 2 2 0.0015 0.095 5.3 0.0 99 148 143 192 120 199 0.79 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_22 - 673 IstB_IS21 PF01695.12 178 0.00072 12.2 0.1 1 1 0.00019 0.012 8.2 0.0 33 61 252 284 220 305 0.67 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 6_6 - 287 MipZ PF09140.6 261 8.8e-11 34.6 0.2 1 2 1.8e-09 1.1e-07 24.4 0.2 2 57 18 72 17 102 0.77 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_6 - 287 MipZ PF09140.6 261 8.8e-11 34.6 0.2 2 2 0.00015 0.0096 8.2 0.0 76 122 119 165 95 178 0.80 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_6 - 267 MipZ PF09140.6 261 3e-09 29.5 0.1 1 2 5.1e-09 3.2e-07 22.9 0.0 2 49 2 49 1 73 0.79 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 1_6 - 267 MipZ PF09140.6 261 3e-09 29.5 0.1 2 2 0.0018 0.12 4.7 0.0 68 108 94 135 74 157 0.70 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 1_6 - 267 YhjQ PF06564.7 244 6.1e-12 38.6 0.0 1 1 1.4e-13 9.2e-12 38.0 0.0 10 150 9 158 2 181 0.78 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 6_6 - 287 YhjQ PF06564.7 244 2.3e-08 26.9 0.0 1 1 7e-10 4.4e-08 26.0 0.0 10 147 25 171 17 179 0.75 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 3_9 - 352 Usp PF00582.21 140 1e-09 31.9 0.0 1 1 2.9e-11 3.7e-09 30.1 0.0 3 114 238 331 236 346 0.92 # 7333 # 8388 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.366 1_22 - 673 DUF87 PF01935.12 229 4.2e-09 29.8 2.6 1 2 0.08 5.1 0.0 0.4 128 195 115 178 80 197 0.48 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 DUF87 PF01935.12 229 4.2e-09 29.8 2.6 2 2 6.6e-11 4.2e-09 29.8 2.6 16 224 263 482 255 507 0.75 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_6 - 267 DUF87 PF01935.12 229 8.5e-05 15.7 0.1 1 1 3.5e-06 0.00022 14.3 0.1 33 60 11 37 9 66 0.95 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 5_4 - 248 NB-ARC PF00931.17 287 0.00048 12.3 0.3 1 2 1e-05 0.0013 10.9 0.1 19 45 31 57 16 77 0.82 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 NB-ARC PF00931.17 287 0.00048 12.3 0.3 2 2 0.045 5.7 -1.1 0.0 124 137 179 192 104 221 0.64 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_22 PF13401.1 131 2.5e-06 20.9 0.3 1 2 6.7e-05 0.0028 11.0 0.0 4 26 54 76 51 118 0.87 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 AAA_22 PF13401.1 131 2.5e-06 20.9 0.3 2 2 0.0035 0.15 5.5 0.1 79 124 175 223 120 230 0.83 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_22 - 673 AAA_22 PF13401.1 131 8.6e-06 19.2 0.2 1 2 1.8e-05 0.00076 12.9 0.1 8 104 274 369 268 389 0.70 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 AAA_22 PF13401.1 131 8.6e-06 19.2 0.2 2 2 0.019 0.81 3.1 0.0 71 108 485 521 454 550 0.69 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 5_4 - 248 AAA_22 PF13401.1 131 3.3e-05 17.3 0.5 1 1 6.7e-06 0.00028 14.3 0.5 9 28 36 55 30 207 0.78 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_27 - 153 tRNA_anti-like PF12869.2 144 0.00011 14.9 0.0 1 1 1.6e-06 0.0002 14.1 0.0 6 56 70 135 67 141 0.88 # 19334 # 19792 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 267 SRP54 PF00448.17 196 0.0001 15.0 0.3 1 2 2.9e-05 0.0037 9.9 0.0 11 38 11 38 9 44 0.94 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 1_6 - 267 SRP54 PF00448.17 196 0.0001 15.0 0.3 2 2 0.0036 0.46 3.1 0.0 65 149 108 195 86 214 0.76 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 2_19 - 398 AAA_15 PF13175.1 415 3.3e-06 19.5 0.9 1 2 2.5e-05 0.0016 10.7 0.3 3 49 4 81 2 111 0.63 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 AAA_15 PF13175.1 415 3.3e-06 19.5 0.9 2 2 0.00026 0.016 7.4 0.0 371 407 183 220 164 226 0.87 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 AAA_15 PF13175.1 415 5.6e-06 18.8 0.0 1 2 0.00013 0.0082 8.4 0.0 25 43 33 58 11 100 0.77 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 AAA_15 PF13175.1 415 5.6e-06 18.8 0.0 2 2 0.00011 0.0071 8.6 0.0 372 410 155 192 147 194 0.92 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_17 PF13207.1 121 3.1e-05 18.0 0.1 1 1 6.9e-06 0.00029 14.9 0.0 3 43 58 96 56 149 0.70 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 AAA_17 PF13207.1 121 3.4e-05 17.9 0.0 1 1 1.6e-06 6.6e-05 17.0 0.0 1 32 33 61 33 125 0.79 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_22 - 673 AAA_17 PF13207.1 121 0.0061 10.7 5.8 1 2 0.00053 0.022 8.8 1.2 3 15 274 286 274 305 0.93 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 AAA_17 PF13207.1 121 0.0061 10.7 5.8 2 2 0.071 3 1.9 0.1 27 97 390 467 378 535 0.64 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 5_4 - 248 AAA_21 PF13304.1 303 1.7e-18 60.8 0.1 1 2 7.9e-07 5e-05 16.6 0.0 3 22 35 54 33 71 0.87 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 AAA_21 PF13304.1 303 1.7e-18 60.8 0.1 2 2 1e-14 6.4e-13 42.5 0.0 179 297 122 192 84 193 0.81 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_21 PF13304.1 303 1e-09 32.0 0.3 1 2 5.6e-06 0.00035 13.8 0.2 2 40 57 93 56 124 0.70 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 AAA_21 PF13304.1 303 1e-09 32.0 0.3 2 2 8.8e-07 5.6e-05 16.4 0.0 220 285 148 210 95 226 0.78 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 Miro PF08477.8 119 5.5e-05 16.9 0.0 1 2 2.5e-06 0.00031 14.5 0.0 4 29 36 61 34 97 0.81 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 Miro PF08477.8 119 5.5e-05 16.9 0.0 2 2 0.085 11 -0.2 0.0 8 25 181 198 180 239 0.74 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 MobB PF03205.9 140 5.1e-05 16.2 0.3 1 2 2.4e-06 0.0003 13.7 0.2 2 22 33 53 32 69 0.83 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 MobB PF03205.9 140 5.1e-05 16.2 0.3 2 2 0.047 6 -0.2 0.0 9 19 181 191 180 229 0.81 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_6 - 267 LpxK PF02606.9 326 0.00031 12.9 0.0 1 1 3.6e-06 0.00045 12.4 0.0 46 71 10 35 2 56 0.92 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 1_6 - 267 ArsA_ATPase PF02374.10 305 6.1e-13 41.6 0.4 1 1 2.5e-14 1.6e-12 40.3 0.1 9 137 9 136 3 140 0.82 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 6_6 - 287 ArsA_ATPase PF02374.10 305 6.7e-09 28.4 0.2 1 1 2.7e-10 1.7e-08 27.1 0.2 8 136 24 151 17 154 0.75 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 2_19 - 398 G-alpha PF00503.15 389 0.00095 11.1 0.0 1 1 1.2e-05 0.0016 10.4 0.0 62 87 58 83 30 130 0.84 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 SMC_N PF02463.14 220 8e-05 15.2 0.2 1 1 1.2e-05 0.00075 12.0 0.2 27 210 34 205 13 211 0.69 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 SMC_N PF02463.14 220 0.00016 14.2 4.7 1 1 5.6e-06 0.00036 13.0 2.3 26 197 56 221 45 243 0.78 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_6 - 267 Fer4_NifH PF00142.13 273 3.3e-10 32.8 0.3 1 2 2.1e-11 1.4e-09 30.8 0.1 7 52 8 53 3 61 0.92 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 1_6 - 267 Fer4_NifH PF00142.13 273 3.3e-10 32.8 0.3 2 2 0.096 6.1 -0.9 0.0 193 232 176 216 170 248 0.62 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 6_6 - 287 Fer4_NifH PF00142.13 273 1.1e-07 24.5 2.0 1 2 2.4e-09 1.5e-07 24.1 0.3 8 57 25 76 18 97 0.83 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 6_6 - 287 Fer4_NifH PF00142.13 273 1.1e-07 24.5 2.0 2 2 0.084 5.3 -0.7 0.1 201 248 197 243 181 270 0.65 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_22 - 673 Arch_ATPase PF01637.13 234 0.00019 14.4 7.4 1 1 1.2e-06 7.7e-05 15.7 3.0 20 135 270 392 263 501 0.81 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 2_19 - 398 Arch_ATPase PF01637.13 234 0.00031 13.7 0.6 1 2 0.00042 0.026 7.4 0.0 20 42 54 76 48 104 0.84 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 Arch_ATPase PF01637.13 234 0.00031 13.7 0.6 2 2 0.0068 0.43 3.4 0.0 121 163 185 222 172 225 0.86 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 AAA_16 PF13191.1 185 7.6e-05 16.0 0.2 1 1 4.7e-06 0.0002 14.6 0.2 22 50 52 80 45 221 0.92 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 AAA_16 PF13191.1 185 0.00012 15.4 0.4 1 1 9.6e-06 0.00041 13.6 0.4 29 45 36 52 17 222 0.63 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_22 - 673 AAA_16 PF13191.1 185 0.00033 13.9 0.1 1 2 0.00082 0.035 7.3 0.0 25 51 271 298 259 385 0.77 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 AAA_16 PF13191.1 185 0.00033 13.9 0.1 2 2 0.009 0.38 3.9 0.0 115 162 467 511 401 530 0.76 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 2_19 - 398 AAA_23 PF13476.1 202 2.4e-05 18.0 0.0 1 1 9e-07 5.7e-05 16.7 0.0 18 40 53 75 39 126 0.88 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 AAA_23 PF13476.1 202 0.00033 14.3 0.1 1 1 8.1e-06 0.00051 13.6 0.1 21 40 33 52 13 54 0.79 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_18 PF13238.1 129 2.1e-06 21.4 0.2 1 2 1.3e-05 0.0017 11.9 0.0 2 42 58 102 58 135 0.75 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 AAA_18 PF13238.1 129 2.1e-06 21.4 0.2 2 2 0.00043 0.055 7.0 0.1 46 94 190 236 174 268 0.85 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 6_6 - 287 CbiA PF01656.18 195 2.2e-29 95.5 0.5 1 1 4.4e-31 2.8e-29 95.1 0.5 1 190 19 240 19 245 0.81 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_6 - 267 CbiA PF01656.18 195 1.6e-27 89.4 0.2 1 1 3.3e-29 2.1e-27 89.0 0.2 1 193 3 228 3 230 0.82 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 1_22 - 673 AAA_14 PF13173.1 128 2e-05 17.8 6.9 1 3 1.1e-06 7.2e-05 16.0 0.4 3 82 271 372 269 383 0.71 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 AAA_14 PF13173.1 128 2e-05 17.8 6.9 2 3 0.065 4.1 0.6 0.0 92 123 442 472 407 478 0.78 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 AAA_14 PF13173.1 128 2e-05 17.8 6.9 3 3 0.0081 0.52 3.5 0.1 31 89 462 527 443 564 0.57 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 5_4 - 248 AAA_14 PF13173.1 128 0.00087 12.5 0.1 1 1 0.00013 0.0084 9.3 0.0 3 24 32 53 30 108 0.86 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_2 - 228 HI0933_like PF03486.9 409 0.00065 11.4 0.0 1 1 8.4e-06 0.0011 10.7 0.0 260 362 96 198 85 212 0.79 # 371 # 1054 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_19 - 398 AAA_29 PF13555.1 62 1.8e-05 17.5 0.1 1 1 6.5e-07 4.2e-05 16.3 0.1 16 41 48 72 43 84 0.78 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 AAA_29 PF13555.1 62 7.3e-05 15.5 0.1 1 1 3.1e-06 0.00019 14.2 0.1 23 43 31 51 20 53 0.80 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 AAA PF00004.24 132 0.0002 14.8 0.4 1 1 3.6e-06 0.00046 13.7 0.4 3 22 36 55 34 199 0.85 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_22 - 673 TK PF00265.13 176 0.00061 12.6 0.0 1 2 4.8e-06 0.00061 12.6 0.0 4 42 273 311 270 369 0.79 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 TK PF00265.13 176 0.00061 12.6 0.0 2 2 0.041 5.3 -0.2 0.1 57 89 480 512 466 524 0.61 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 5_4 - 248 MMR_HSR1 PF01926.18 116 6.5e-05 16.2 0.2 1 1 2.4e-06 0.00015 14.9 0.2 3 54 35 117 33 208 0.55 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 MMR_HSR1 PF01926.18 116 0.0014 11.9 0.9 1 1 7.8e-05 0.005 10.1 0.3 2 20 57 75 56 221 0.83 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 4_6 - 922 N6_Mtase PF02384.11 311 7.6e-06 18.4 0.0 1 1 7.7e-07 9.8e-05 14.7 0.0 50 135 379 467 361 546 0.60 # 5083 # 7848 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 5_4 - 248 DUF258 PF03193.11 161 7e-06 18.5 0.0 1 1 2.9e-07 1.2e-05 17.7 0.0 22 67 17 63 4 79 0.81 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 DUF258 PF03193.11 161 1.6e-05 17.4 0.3 1 1 1.1e-06 4.5e-05 15.9 0.2 23 66 41 85 21 106 0.75 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_22 - 673 DUF258 PF03193.11 161 0.001 11.5 0.0 1 1 6.2e-05 0.0026 10.2 0.0 34 51 269 286 250 304 0.78 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_28 - 510 TraG-D_C PF12696.2 128 4.2e-43 139.5 0.3 1 1 1.6e-44 1e-42 138.3 0.0 1 128 281 405 281 405 0.91 # 19789 # 21318 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.398 1_22 - 673 TraG-D_C PF12696.2 128 3.1e-05 17.1 0.3 1 1 3.6e-06 0.00023 14.3 0.3 15 125 518 659 502 662 0.66 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_6 - 267 AAA_31 PF13614.1 157 6.7e-09 29.1 0.2 1 1 2.8e-10 1.8e-08 27.7 0.2 9 149 9 156 2 162 0.76 # 2401 # 3201 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.362 6_6 - 287 AAA_31 PF13614.1 157 1.6e-07 24.6 0.3 1 1 1.8e-08 1.1e-06 21.9 0.3 9 135 25 159 18 179 0.64 # 4074 # 4934 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.386 5_4 - 248 NTPase_1 PF03266.10 168 0.00038 13.4 0.2 1 2 5.9e-05 0.0075 9.2 0.1 4 21 36 53 34 74 0.80 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 NTPase_1 PF03266.10 168 0.00038 13.4 0.2 2 2 0.01 1.3 1.9 0.0 94 136 151 195 122 209 0.77 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 AAA_33 PF13671.1 143 3.5e-05 17.0 0.0 1 1 1.7e-06 0.00011 15.4 0.0 4 33 36 62 34 118 0.71 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_33 PF13671.1 143 0.00046 13.3 0.0 1 1 1.7e-05 0.0011 12.2 0.0 1 19 56 74 56 114 0.89 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 4_6 - 922 Methyltransf_26 PF13659.1 117 1.9e-11 37.3 0.0 1 1 3.4e-13 4.4e-11 36.1 0.0 2 100 377 524 376 555 0.76 # 5083 # 7848 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 2_19 - 398 AAA_30 PF13604.1 196 0.00012 15.0 0.0 1 1 3.4e-06 0.00044 13.1 0.0 15 48 51 84 45 103 0.77 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_22 - 673 FtsK_SpoIIIE PF01580.13 205 0.00028 13.6 0.0 1 1 5.6e-06 0.00072 12.3 0.0 40 80 272 308 251 322 0.78 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 2_19 - 398 ABC_tran PF00005.22 137 1.1e-33 109.6 0.0 1 1 3.4e-35 2.1e-33 108.7 0.0 2 136 45 192 44 193 0.93 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 ABC_tran PF00005.22 137 8.4e-31 100.3 0.0 1 1 2e-32 1.3e-30 99.8 0.0 1 136 21 162 21 163 0.90 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 TIGR03263 TIGR03263 180 0.00033 13.2 0.0 1 1 5.6e-06 0.00072 12.2 0.0 5 23 35 53 31 97 0.83 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_19 PF13245.1 76 0.00021 14.3 0.0 1 1 4.4e-06 0.00056 12.9 0.0 9 37 53 80 46 98 0.84 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_22 - 673 AAA_10 PF12846.2 304 1e-55 182.5 0.7 1 1 6.3e-57 2e-55 181.5 0.7 1 294 270 579 270 588 0.87 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_28 - 510 AAA_10 PF12846.2 304 8.3e-15 48.2 0.1 1 1 3.7e-16 1.2e-14 47.7 0.1 1 302 23 362 23 364 0.73 # 19789 # 21318 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.398 5_4 - 248 AAA_10 PF12846.2 304 5.2e-05 16.0 0.1 1 1 4e-06 0.00013 14.7 0.0 6 37 36 67 34 129 0.86 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_10 PF12846.2 304 0.00063 12.4 0.3 1 1 8.7e-05 0.0028 10.3 0.0 4 23 57 76 54 87 0.83 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 SbcCD_C PF13558.1 90 0.00038 13.6 0.1 1 1 1.3e-05 0.00082 12.6 0.1 61 88 180 207 162 209 0.79 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 SbcCD_C PF13558.1 90 0.00093 12.4 0.0 1 1 0.0001 0.0064 9.7 0.0 26 84 128 173 113 179 0.72 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 4_14 - 285 DNA_photolyase PF00875.13 165 1.5e-05 18.0 0.5 1 1 4.7e-07 3e-05 17.1 0.1 30 115 153 238 140 264 0.75 # 13718 # 14572 # 1 # ID=4_14;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_1 - 169 DNA_photolyase PF00875.13 165 4.6e-05 16.5 0.1 1 1 8.7e-07 5.5e-05 16.2 0.1 28 132 35 142 22 158 0.78 # 3 # 509 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 5_4 - 248 PduV-EutP PF10662.4 143 0.00064 12.5 0.0 1 1 9.6e-06 0.0012 11.6 0.0 6 26 36 56 33 93 0.83 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_28 - 510 TrwB_AAD_bind PF10412.4 386 5.2e-35 113.9 0.0 1 2 2.6e-10 1.7e-08 26.7 0.0 14 136 22 150 14 162 0.82 # 19789 # 21318 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.398 1_28 - 510 TrwB_AAD_bind PF10412.4 386 5.2e-35 113.9 0.0 2 2 4.5e-28 2.9e-26 85.2 0.0 219 381 252 419 188 423 0.83 # 19789 # 21318 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.398 1_22 - 673 TrwB_AAD_bind PF10412.4 386 5.3e-07 21.7 0.2 1 2 2.7e-05 0.0017 10.2 0.0 12 56 267 311 257 318 0.74 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_22 - 673 TrwB_AAD_bind PF10412.4 386 5.3e-07 21.7 0.2 2 2 6.2e-05 0.004 9.0 0.0 237 312 493 575 479 664 0.83 # 13749 # 15767 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.423 1_28 - 510 T4SS-DNA_transf PF02534.9 469 1.3e-133 439.2 6.0 1 1 1.4e-135 1.7e-133 438.8 6.0 45 450 24 445 5 502 0.92 # 19789 # 21318 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.398 5_4 - 248 ArgK PF03308.11 267 0.00049 12.1 0.1 1 1 6.5e-06 0.00083 11.4 0.1 15 58 17 61 5 75 0.81 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 UPF0079 PF02367.12 123 5.4e-05 16.1 0.1 1 1 8.5e-07 0.00011 15.1 0.1 8 36 24 52 17 75 0.82 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_19 - 398 AAA_24 PF13479.1 213 0.00091 12.1 0.0 1 2 0.006 0.76 2.5 0.0 6 23 57 74 54 85 0.87 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 2_19 - 398 AAA_24 PF13479.1 213 0.00091 12.1 0.0 2 2 0.00028 0.035 6.9 0.0 111 137 199 225 197 241 0.84 # 18780 # 19973 # 1 # ID=2_19;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.433 5_4 - 248 NACHT PF05729.7 166 0.0025 10.7 1.3 1 1 5e-05 0.0063 9.4 0.2 5 21 36 52 33 65 0.89 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 AAA_25 PF13481.1 194 6.2e-05 15.7 0.4 1 2 2.5e-06 0.00032 13.4 0.0 29 59 27 59 8 97 0.84 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 5_4 - 248 AAA_25 PF13481.1 194 6.2e-05 15.7 0.4 2 2 0.036 4.5 -0.2 0.1 167 189 172 193 139 198 0.62 # 2259 # 3002 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b9f3aa63-248a-447a-ada3-1f48d2544604 # Target file: checkm_output/bins/pGCA_002576835.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002576835.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b9f3aa63-248a-447a-ada3-1f48d2544604 checkm_output/bins/pGCA_002576835.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:05 2020 # [ok]