# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 899 cobW PF02492.14 178 5.6e-05 14.1 0.0 1 1 6.4e-06 0.00023 12.1 0.0 4 22 413 431 411 443 0.85 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 DUF87 PF01935.12 229 3.6e-09 28.2 2.1 1 3 7.1e-08 1.3e-06 19.8 0.0 10 48 399 434 386 445 0.79 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 DUF87 PF01935.12 229 3.6e-09 28.2 2.1 2 3 0.002 0.037 5.3 0.0 153 226 567 650 502 653 0.72 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 DUF87 PF01935.12 229 3.6e-09 28.2 2.1 3 3 0.087 1.6 -0.1 0.8 120 184 806 878 798 894 0.75 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 450 DUF87 PF01935.12 229 1.4e-05 16.5 0.1 1 1 2.3e-06 4.3e-05 14.9 0.0 26 63 73 109 65 124 0.92 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_31 - 899 AAA_22 PF13401.1 131 1e-05 17.2 0.0 1 1 4.1e-06 7.6e-05 14.4 0.0 9 100 414 514 410 548 0.66 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 450 AAA_22 PF13401.1 131 0.0004 12.1 1.3 1 3 0.0012 0.022 6.4 0.0 5 25 71 91 65 107 0.89 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_1 - 450 AAA_22 PF13401.1 131 0.0004 12.1 1.3 2 3 0.025 0.47 2.1 0.1 52 95 214 260 160 274 0.63 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_1 - 450 AAA_22 PF13401.1 131 0.0004 12.1 1.3 3 3 0.025 0.47 2.1 0.3 55 98 217 263 194 342 0.68 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_31 - 899 AAA_15 PF13175.1 415 0.00013 12.6 0.2 1 1 3.4e-06 0.00013 12.6 0.2 27 85 414 479 385 509 0.79 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_17 PF13207.1 121 0.00037 12.9 0.2 1 1 4.3e-05 0.0016 10.8 0.0 4 60 414 481 412 597 0.63 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 T2SE PF00437.15 272 9.9e-05 12.8 0.0 1 1 4.7e-06 0.00017 12.0 0.0 133 154 414 435 409 442 0.88 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 G-alpha PF00503.15 389 2.7e-05 14.4 0.0 1 1 1.6e-06 5.9e-05 13.3 0.0 63 175 414 582 409 610 0.60 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_16 PF13191.1 185 0.00011 13.7 0.0 1 1 8.2e-06 0.0003 12.3 0.0 29 52 414 439 413 549 0.78 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_23 PF13476.1 202 6.4e-05 14.8 2.9 1 3 0.063 2.3 -0.1 0.0 75 114 229 264 93 306 0.56 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_23 PF13476.1 202 6.4e-05 14.8 2.9 2 3 1.7e-05 0.00064 11.6 0.0 24 40 414 430 413 499 0.85 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_23 PF13476.1 202 6.4e-05 14.8 2.9 3 3 0.029 1.1 1.0 0.4 88 143 840 878 735 895 0.52 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_18 PF13238.1 129 1.2e-05 17.1 0.1 1 2 0.099 3.7 -0.6 0.0 96 114 244 262 187 272 0.79 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_18 PF13238.1 129 1.2e-05 17.1 0.1 2 2 3.3e-06 0.00012 13.9 0.0 3 53 414 484 413 586 0.69 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_14 PF13173.1 128 1.4e-08 26.3 0.0 1 3 0.039 1.4 0.3 0.0 72 102 317 346 304 359 0.86 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_14 PF13173.1 128 1.4e-08 26.3 0.0 2 3 6.7e-07 2.5e-05 15.7 0.0 7 65 414 473 409 549 0.77 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_14 PF13173.1 128 1.4e-08 26.3 0.0 3 3 0.0016 0.061 4.8 0.0 28 85 625 687 606 705 0.60 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 AAA_29 PF13555.1 62 1.1e-05 16.5 0.0 1 1 7.6e-07 2.8e-05 15.2 0.0 25 40 411 426 397 430 0.80 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 MMR_HSR1 PF01926.18 116 8.9e-05 14.0 0.0 1 1 1e-05 0.00037 12.0 0.0 3 21 413 431 411 469 0.86 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 450 DUF258 PF03193.11 161 1.8e-05 15.5 0.0 1 1 2e-06 3.7e-05 14.5 0.0 21 59 55 94 42 114 0.78 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_31 - 899 DUF258 PF03193.11 161 0.00028 11.6 0.0 1 1 2.8e-05 0.00052 10.7 0.0 36 58 410 432 387 458 0.80 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 TraG-D_C PF12696.2 128 6.1e-05 14.4 0.3 1 1 6.8e-06 0.00025 12.4 0.0 3 42 668 706 667 727 0.92 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 450 FtsK_SpoIIIE PF01580.13 205 9.7e-06 16.6 0.0 1 1 9.4e-07 1.7e-05 15.8 0.0 40 81 72 109 37 120 0.82 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_31 - 899 FtsK_SpoIIIE PF01580.13 205 0.00038 11.4 0.0 1 1 4.5e-05 0.00084 10.3 0.0 27 64 397 435 386 456 0.78 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 ABC_tran PF00005.22 137 1.6e-06 20.0 0.0 1 1 7.9e-07 1.5e-05 16.9 0.0 12 34 410 432 407 444 0.88 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 450 ABC_tran PF00005.22 137 3.2e-05 15.8 0.0 1 1 1.3e-05 0.00023 13.0 0.0 14 44 73 103 65 182 0.77 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_1 - 450 AAA_10 PF12846.2 304 6.2e-41 132.2 0.8 1 1 3.7e-42 6.9e-41 132.1 0.1 3 303 72 381 70 382 0.86 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_31 - 899 AAA_10 PF12846.2 304 1.1e-19 62.4 0.0 1 1 1.2e-20 2.1e-19 61.5 0.0 3 301 411 740 409 743 0.78 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 450 DUF853 PF05872.7 504 3.7e-05 13.6 0.1 1 1 1.8e-06 6.8e-05 12.8 0.1 25 65 74 114 59 118 0.93 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_31 - 899 TrwB_AAD_bind PF10412.4 386 7.3e-06 16.2 0.0 1 2 6.2e-05 0.0012 9.0 0.0 7 39 401 433 396 439 0.86 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 TrwB_AAD_bind PF10412.4 386 7.3e-06 16.2 0.0 2 2 0.0012 0.021 4.8 0.0 194 283 620 704 564 708 0.87 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_1 - 450 TrwB_AAD_bind PF10412.4 386 3.8e-05 13.9 0.1 1 1 4.8e-06 8.9e-05 12.6 0.1 16 54 71 109 63 112 0.89 # 1 # 1350 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_31 - 899 ArgK PF03308.11 267 0.00046 10.5 0.0 1 1 2.6e-05 0.00096 9.4 0.0 31 55 411 435 402 452 0.85 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 RNA_helicase PF00910.17 107 0.00012 13.8 0.0 1 1 9e-06 0.00033 12.4 0.0 3 32 414 443 412 457 0.83 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_31 - 899 NACHT PF05729.7 166 8.7e-05 13.7 0.0 1 1 7.1e-06 0.00026 12.2 0.0 5 33 414 442 412 476 0.84 # 25161 # 27857 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7558f2be-037a-44b4-909b-78d8572408bb # Target file: checkm_output/bins/pGCA_002443015.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002443015.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7558f2be-037a-44b4-909b-78d8572408bb checkm_output/bins/pGCA_002443015.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:50:03 2020 # [ok]