# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 519 UPF0020 PF01170.13 180 6.9e-08 25.3 0.0 1 1 1.3e-09 1.5e-07 24.2 0.0 23 122 218 310 207 316 0.82 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 2_35 - 256 cobW PF02492.14 178 0.00046 12.7 0.9 1 1 2.6e-05 0.0029 10.1 0.9 4 92 28 102 25 123 0.84 # 14061 # 14828 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_29 - 258 Torsin PF06309.6 127 5.9e-05 16.0 0.1 1 1 1e-06 0.00012 15.1 0.1 42 88 105 151 68 180 0.78 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 IstB_IS21 PF01695.12 178 2.6e-21 68.9 0.1 1 1 2.9e-23 3.2e-21 68.6 0.1 27 158 95 228 66 242 0.77 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_1 - 62 MipZ PF09140.6 261 3.3e-06 19.4 0.0 1 1 6.5e-08 3.7e-06 19.2 0.0 2 41 11 51 10 60 0.83 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 MipZ PF09140.6 261 3.4e-06 19.3 0.0 1 1 6.5e-08 3.7e-06 19.2 0.0 2 41 11 51 10 60 0.83 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 5_2 - 260 YhjQ PF06564.7 244 6.3e-08 25.3 0.0 1 1 2.5e-09 9.4e-08 24.7 0.0 13 152 1 147 1 153 0.81 # 122 # 901 # -1 # ID=5_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 3_1 - 62 YhjQ PF06564.7 244 6.3e-05 15.5 0.0 1 1 1.8e-06 6.6e-05 15.4 0.0 3 41 11 50 9 57 0.85 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 YhjQ PF06564.7 244 6.3e-05 15.5 0.0 1 1 1.8e-06 6.6e-05 15.4 0.0 3 41 11 50 9 57 0.85 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 1_28 - 519 Methyltransf_18 PF12847.2 112 0.00018 15.1 0.0 1 1 4.5e-06 0.0005 13.7 0.0 4 79 226 304 223 355 0.79 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_8 - 144 Usp PF00582.21 140 1.1e-14 47.9 0.0 1 1 1.7e-16 1.9e-14 47.1 0.0 1 140 1 143 1 143 0.92 # 5956 # 6387 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.255 2_6 - 275 NB-ARC PF00931.17 287 1.8e-05 16.8 0.7 1 2 3.7e-06 0.00042 12.3 0.0 15 64 31 81 24 108 0.80 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_6 - 275 NB-ARC PF00931.17 287 1.8e-05 16.8 0.7 2 2 0.0031 0.35 2.7 0.1 234 281 120 167 110 171 0.86 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 3_19 - 318 NmrA PF05368.8 233 4e-08 25.8 0.5 1 1 1.4e-09 1.6e-07 23.9 0.5 1 232 10 273 10 274 0.69 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 2_35 - 256 AAA_22 PF13401.1 131 0.00034 13.9 0.3 1 1 0.00013 0.007 9.6 0.3 8 29 28 49 22 163 0.82 # 14061 # 14828 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_6 - 275 AAA_22 PF13401.1 131 0.00053 13.2 0.0 1 1 2.1e-05 0.0012 12.1 0.0 5 36 36 67 31 197 0.86 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 3_1 - 62 SRP54 PF00448.17 196 0.00018 14.0 0.0 1 1 3.5e-06 0.0002 13.9 0.0 10 39 19 49 9 57 0.83 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 SRP54 PF00448.17 196 0.00018 14.0 0.0 1 1 3.5e-06 0.0002 13.9 0.0 10 39 19 49 9 57 0.83 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_35 - 256 KAP_NTPase PF07693.9 325 7.4e-06 18.2 0.2 1 1 9.8e-08 1.1e-05 17.6 0.2 11 48 15 78 7 229 0.73 # 14061 # 14828 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_6 - 275 AAA_17 PF13207.1 121 2.1e-07 24.9 0.0 1 1 9.3e-09 5.2e-07 23.6 0.0 1 49 37 82 37 263 0.79 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_7 - 225 AAA_17 PF13207.1 121 4.8e-06 20.5 1.0 1 1 1.3e-07 7.3e-06 19.9 1.0 23 113 24 122 21 204 0.85 # 5149 # 5823 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_6 - 275 Miro PF08477.8 119 0.00044 13.8 0.0 1 1 8.9e-06 0.001 12.7 0.0 2 49 38 93 36 135 0.74 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_29 - 258 MobB PF03205.9 140 0.0006 12.6 0.0 1 1 1.3e-05 0.0015 11.3 0.0 6 36 122 151 117 157 0.88 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 4_1 - 62 LpxK PF02606.9 326 0.00045 12.3 0.0 1 1 8.2e-06 0.00046 12.2 0.0 32 66 6 38 3 54 0.75 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 3_1 - 62 LpxK PF02606.9 326 0.00049 12.1 0.1 1 1 9e-06 0.0005 12.1 0.1 32 66 6 38 3 54 0.75 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_21 - 346 ADH_zinc_N PF00107.21 130 1e-29 95.8 0.1 1 1 1.5e-31 1.7e-29 95.1 0.1 1 129 178 305 178 306 0.98 # 16556 # 17593 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 3_1 - 62 ArsA_ATPase PF02374.10 305 2.3e-09 29.7 0.0 1 1 6.5e-11 2.4e-09 29.6 0.0 4 48 12 58 9 61 0.84 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 ArsA_ATPase PF02374.10 305 2.3e-09 29.7 0.0 1 1 6.5e-11 2.4e-09 29.6 0.0 4 48 12 58 9 61 0.84 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 5_2 - 260 ArsA_ATPase PF02374.10 305 1.2e-06 20.8 0.6 1 1 9.7e-08 3.6e-06 19.2 0.1 12 137 1 122 1 125 0.66 # 122 # 901 # -1 # ID=5_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 2_29 - 258 PhoH PF02562.11 205 0.00027 13.3 0.2 1 1 7.3e-06 0.00082 11.7 0.1 12 42 107 139 92 160 0.77 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 AFG1_ATPase PF03969.11 362 1.3e-07 23.7 0.1 1 1 1.6e-09 1.8e-07 23.3 0.1 21 208 74 255 57 256 0.65 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 T2SE PF00437.15 272 0.00028 12.9 0.1 1 1 4.1e-06 0.00046 12.2 0.1 97 155 85 143 63 153 0.76 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_4 - 540 Terminase_1 PF03354.10 477 2e-101 332.8 0.5 1 1 2e-103 2.3e-101 332.6 0.5 1 468 83 537 83 539 0.96 # 1320 # 2939 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.343 2_29 - 258 Zeta_toxin PF06414.7 201 2.5e-05 16.5 0.1 1 2 9.3e-07 0.0001 14.5 0.0 12 44 112 145 100 179 0.82 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 Zeta_toxin PF06414.7 201 2.5e-05 16.5 0.1 2 2 0.041 4.6 -0.7 0.0 36 53 233 251 194 254 0.64 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_20 - 592 NAD_binding_8 PF13450.1 68 6.2e-07 22.5 0.1 1 1 1.3e-08 1.4e-06 21.3 0.1 2 48 28 80 27 97 0.71 # 14709 # 16484 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.332 3_1 - 62 VirC1 PF07015.6 231 3.3e-05 16.1 0.0 1 1 6.3e-07 3.5e-05 16.0 0.0 2 39 10 48 9 58 0.74 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 VirC1 PF07015.6 231 3.3e-05 16.1 0.0 1 1 6.3e-07 3.5e-05 16.0 0.0 2 39 10 48 9 58 0.74 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 3_1 - 62 Fer4_NifH PF00142.13 273 3.6e-06 19.4 0.0 1 1 7.1e-08 4e-06 19.2 0.0 8 46 18 57 10 61 0.87 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 Fer4_NifH PF00142.13 273 3.6e-06 19.4 0.0 1 1 7.6e-08 4.3e-06 19.1 0.0 8 46 18 57 11 61 0.88 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_29 - 258 AAA_16 PF13191.1 185 0.00023 14.2 0.0 1 1 2.9e-06 0.00033 13.7 0.0 16 84 108 180 96 250 0.74 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_6 - 275 AAA_18 PF13238.1 129 3.7e-08 26.8 0.3 1 1 2.7e-09 1.5e-07 24.8 0.0 1 118 38 153 38 167 0.83 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_29 - 258 AAA_18 PF13238.1 129 0.00069 13.0 1.4 1 2 0.053 3 1.3 0.1 15 79 57 122 55 124 0.66 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 AAA_18 PF13238.1 129 0.00069 13.0 1.4 2 2 3.8e-05 0.0021 11.4 0.2 4 95 122 203 119 256 0.74 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_19 - 318 adh_short PF00106.20 167 2.2e-10 33.8 0.0 1 1 3.2e-12 3.5e-10 33.1 0.0 3 137 10 129 9 135 0.88 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 5_2 - 260 CbiA PF01656.18 195 4e-25 81.4 0.2 1 1 1.7e-26 4.9e-25 81.1 0.2 10 193 1 213 1 215 0.80 # 122 # 901 # -1 # ID=5_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 3_1 - 62 CbiA PF01656.18 195 2.3e-16 52.8 0.1 1 1 8.8e-18 2.5e-16 52.7 0.1 1 46 12 58 12 62 0.94 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 CbiA PF01656.18 195 2.3e-16 52.8 0.1 1 1 8.8e-18 2.5e-16 52.7 0.1 1 46 12 58 12 62 0.94 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_29 - 258 CbiA PF01656.18 195 0.002 10.6 2.0 1 1 0.00026 0.0074 8.7 0.1 8 31 125 148 118 152 0.89 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_19 - 318 Polysacc_synt_2 PF02719.10 294 9.6e-13 40.7 1.5 1 1 2.2e-13 2.5e-11 36.0 1.5 1 260 10 273 10 291 0.64 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 2_6 - 275 AAA_14 PF13173.1 128 9.5e-06 18.6 0.1 1 1 1e-06 0.00012 15.1 0.1 3 42 36 70 34 140 0.62 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_29 - 258 AAA PF00004.24 132 3.5e-07 23.6 0.1 1 1 1.1e-08 6.4e-07 22.7 0.1 2 128 120 237 119 241 0.75 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_6 - 275 AAA PF00004.24 132 0.00054 13.3 0.4 1 2 0.0013 0.07 6.4 0.0 1 22 38 59 38 69 0.86 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_6 - 275 AAA PF00004.24 132 0.00054 13.3 0.4 2 2 0.0036 0.2 4.9 0.1 68 116 70 119 64 138 0.70 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_29 - 258 Bac_DnaA PF00308.13 219 1.2e-09 31.1 1.1 1 1 3.4e-11 1.9e-09 30.5 1.1 16 156 101 238 86 246 0.71 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_35 - 256 Bac_DnaA PF00308.13 219 4.5e-06 19.5 0.5 1 1 1.4e-07 7.6e-06 18.7 0.5 24 113 14 110 8 152 0.76 # 14061 # 14828 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 3_19 - 318 KR PF08659.5 181 2.4e-05 17.1 0.1 1 1 1e-06 0.00012 14.9 0.1 3 143 10 133 9 138 0.78 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_20 - 592 Strep_67kDa_ant PF06100.6 500 5.3e-279 918.6 0.3 1 1 5.7e-281 6.4e-279 918.3 0.3 1 500 21 520 21 520 1.00 # 14709 # 16484 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.332 2_29 - 258 Sigma54_activat PF00158.21 168 0.00037 13.0 0.2 1 1 8e-06 0.0009 11.8 0.0 6 49 99 143 94 156 0.76 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_28 - 519 N6_Mtase PF02384.11 311 2.8e-118 387.5 0.2 1 1 3.5e-120 3.9e-118 387.0 0.2 2 310 177 480 176 481 0.97 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 5_2 - 260 AAA_31 PF13614.1 157 6.9e-13 41.9 1.1 1 1 5.1e-14 1.9e-12 40.5 1.1 12 150 1 144 1 151 0.81 # 122 # 901 # -1 # ID=5_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 3_1 - 62 AAA_31 PF13614.1 157 1.5e-08 27.8 0.0 1 1 4.5e-10 1.7e-08 27.6 0.0 2 49 11 59 10 62 0.91 # 2 # 187 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 4_1 - 62 AAA_31 PF13614.1 157 1.6e-08 27.7 0.0 1 1 4.5e-10 1.7e-08 27.6 0.0 2 49 11 59 10 62 0.91 # 2 # 187 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.285 2_6 - 275 AAA_33 PF13671.1 143 4.1e-06 19.8 0.0 1 1 6.9e-08 7.8e-06 18.9 0.0 1 123 37 152 37 167 0.75 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 1_28 - 519 Methyltransf_26 PF13659.1 117 2.4e-15 49.7 0.0 1 1 6.1e-17 6.8e-15 48.2 0.0 3 116 226 355 225 356 0.82 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 1_21 - 346 2-Hacid_dh_C PF02826.14 178 4.7e-05 15.7 0.1 1 1 6.8e-07 7.6e-05 15.0 0.1 29 83 161 216 143 263 0.83 # 16556 # 17593 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 2_29 - 258 AAA_30 PF13604.1 196 2.9e-07 23.3 0.5 1 2 5.1e-08 5.8e-06 19.1 0.1 9 50 107 148 97 151 0.86 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 AAA_30 PF13604.1 196 2.9e-07 23.3 0.5 2 2 0.014 1.5 1.4 0.0 79 119 162 207 155 215 0.72 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_28 - 519 MTS PF05175.9 170 4.3e-09 29.0 0.0 1 1 7.6e-11 8.5e-09 28.0 0.0 20 141 210 355 202 377 0.87 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 2_29 - 258 ABC_tran PF00005.22 137 0.0085 9.5 4.1 1 2 0.069 7.7 -0.1 0.2 53 80 61 99 50 116 0.56 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 ABC_tran PF00005.22 137 0.0085 9.5 4.1 2 2 2.9e-05 0.0033 10.8 0.4 5 51 110 156 108 250 0.72 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_28 - 519 Eco57I PF07669.6 106 5.2e-06 19.9 0.1 1 1 2.9e-07 3.3e-05 17.3 0.0 3 103 295 405 293 408 0.82 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 3_19 - 318 NAD_binding_4 PF07993.7 249 3.3e-15 48.7 0.1 1 1 5e-15 5.6e-13 41.4 0.1 63 205 54 194 12 231 0.75 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_28 - 519 AviRa PF11599.3 246 0.00023 13.3 0.0 1 1 3.8e-06 0.00042 12.4 0.0 49 99 221 269 206 281 0.84 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 2_29 - 258 AAA_19 PF13245.1 76 0.00037 13.3 0.0 1 1 6.4e-06 0.00072 12.4 0.0 9 35 116 140 107 152 0.70 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_19 - 318 RmlD_sub_bind PF04321.12 287 7.6e-18 57.4 0.0 1 1 7.5e-20 8.4e-18 57.2 0.0 1 141 8 167 8 262 0.89 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 3_19 - 318 NAD_binding_10 PF13460.1 183 1.7e-08 27.7 0.0 1 1 2.1e-10 2.3e-08 27.3 0.0 1 149 10 184 10 210 0.77 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 3_19 - 318 3Beta_HSD PF01073.14 280 2e-24 78.8 0.0 1 1 2.3e-26 2.6e-24 78.4 0.0 1 224 11 230 11 239 0.82 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_30 - 929 ResIII PF04851.10 184 2.9e-34 111.5 0.3 1 2 2.6e-36 2.9e-34 111.5 0.3 2 183 239 401 238 402 0.86 # 24922 # 27708 # -1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_30 - 929 ResIII PF04851.10 184 2.9e-34 111.5 0.3 2 2 0.094 11 -1.1 0.4 46 70 720 746 667 823 0.65 # 24922 # 27708 # -1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_28 - 519 Methyltransf_31 PF13847.1 152 1.9e-05 17.3 0.0 1 1 8.9e-07 5e-05 16.0 0.0 3 112 223 356 221 440 0.74 # 22692 # 24248 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 3_19 - 318 Methyltransf_31 PF13847.1 152 0.0057 9.3 3.7 1 1 0.00026 0.014 8.0 2.7 13 83 15 84 7 167 0.62 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 2_29 - 258 TIP49 PF06068.8 398 0.00023 13.0 0.0 1 1 3.2e-06 0.00036 12.4 0.0 39 77 104 143 84 160 0.74 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_19 - 318 Epimerase PF01370.16 236 1.2e-62 204.5 0.0 1 1 1.3e-64 1.4e-62 204.2 0.0 1 236 10 248 10 248 0.95 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_30 - 929 DEAD PF00270.24 169 2.1e-11 36.7 0.3 1 2 2.5e-12 2.8e-10 33.0 0.0 4 164 245 402 242 407 0.74 # 24922 # 27708 # -1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_30 - 929 DEAD PF00270.24 169 2.1e-11 36.7 0.3 2 2 0.03 3.3 0.2 0.0 50 101 498 552 471 579 0.67 # 24922 # 27708 # -1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 2_29 - 258 DUF815 PF05673.8 250 1.5e-05 17.1 0.2 1 1 2e-07 2.3e-05 16.5 0.2 37 137 101 210 64 222 0.71 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_21 - 346 Pyr_redox PF00070.22 80 6.8e-05 16.4 0.1 1 3 8.8e-05 0.0099 9.4 0.0 10 62 68 114 67 127 0.84 # 16556 # 17593 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_21 - 346 Pyr_redox PF00070.22 80 6.8e-05 16.4 0.1 2 3 0.03 3.4 1.3 0.1 2 35 171 205 170 215 0.82 # 16556 # 17593 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_21 - 346 Pyr_redox PF00070.22 80 6.8e-05 16.4 0.1 3 3 0.039 4.4 0.9 0.0 9 34 237 262 227 286 0.75 # 16556 # 17593 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 2_29 - 258 AAA_11 PF13086.1 236 8.5e-05 15.2 2.0 1 2 0.019 2.1 0.9 0.3 128 160 63 100 5 113 0.47 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 AAA_11 PF13086.1 236 8.5e-05 15.2 2.0 2 2 9e-07 0.0001 15.0 0.3 3 115 94 237 92 255 0.56 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_19 - 318 DapB_N PF01113.15 124 9.4e-05 15.4 0.1 1 1 1.4e-06 0.00016 14.7 0.1 1 95 8 102 8 136 0.78 # 18249 # 19202 # 1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 2_29 - 258 PIF1 PF05970.9 364 3.2e-05 16.0 0.6 1 2 8.7e-07 9.8e-05 14.4 0.1 4 54 95 148 93 153 0.81 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 PIF1 PF05970.9 364 3.2e-05 16.0 0.6 2 2 0.026 2.9 -0.3 0.0 92 121 170 200 147 224 0.66 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_29 - 258 RNA_helicase PF00910.17 107 2e-05 17.8 0.5 1 1 4.2e-07 4.7e-05 16.7 0.1 2 77 120 205 119 233 0.72 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_35 - 256 AAA_24 PF13479.1 213 2.4e-32 105.3 1.0 1 1 5.1e-34 2.9e-32 105.0 1.0 2 200 23 233 22 251 0.83 # 14061 # 14828 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_6 - 275 AAA_24 PF13479.1 213 0.00015 14.5 0.0 1 1 4.5e-06 0.00025 13.7 0.0 5 46 37 80 34 134 0.83 # 3337 # 4161 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.331 2_29 - 258 NACHT PF05729.7 166 0.00031 13.5 0.0 1 1 5.4e-06 0.00061 12.5 0.0 3 41 119 152 117 188 0.79 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_35 - 256 AAA_25 PF13481.1 194 0.0009 11.7 2.3 1 2 0.00081 0.09 5.2 0.6 37 51 28 42 25 70 0.85 # 14061 # 14828 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_35 - 256 AAA_25 PF13481.1 194 0.0009 11.7 2.3 2 2 0.00045 0.05 6.0 0.1 129 157 80 109 53 140 0.76 # 14061 # 14828 # -1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 2_29 - 258 AAA_5 PF07728.9 139 3.6e-08 26.3 0.1 1 1 6.3e-10 7.1e-08 25.3 0.1 2 94 119 210 118 248 0.87 # 10639 # 11412 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/862e9977-274b-4061-abe7-24b19e29c0c9 # Target file: checkm_output/bins/pGCA_002442895.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002442895.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/862e9977-274b-4061-abe7-24b19e29c0c9 checkm_output/bins/pGCA_002442895.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:58 2020 # [ok]