# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_11 - 65 MipZ PF09140.6 261 1.2e-07 24.6 0.0 1 1 1.5e-09 1.2e-07 24.6 0.0 2 40 3 41 2 57 0.90 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 MipZ PF09140.6 261 8.2e-06 18.6 0.0 1 1 1.1e-07 8.5e-06 18.5 0.0 2 36 3 37 2 37 0.96 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 3_11 - 65 YhjQ PF06564.7 244 1e-05 18.5 0.0 1 1 1.4e-07 1.1e-05 18.5 0.0 1 39 1 39 1 54 0.91 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 YhjQ PF06564.7 244 1.6e-05 17.9 0.0 1 1 2.2e-07 1.7e-05 17.8 0.0 1 37 1 37 1 37 0.98 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 3_9 - 449 3HCDH_N PF02737.13 180 1.5e-06 21.5 0.1 1 2 5.8e-05 0.0046 10.1 0.0 3 31 8 36 6 76 0.88 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 3HCDH_N PF02737.13 180 1.5e-06 21.5 0.1 2 2 0.00014 0.011 8.9 0.0 2 39 168 205 167 258 0.81 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_8 - 548 3HCDH_N PF02737.13 180 4.7e-06 19.9 1.6 1 1 6.6e-08 5.2e-06 19.8 0.1 2 76 253 326 252 339 0.80 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 GIDA PF01134.17 392 9.8e-08 24.7 0.1 1 2 8.1e-08 6.4e-06 18.7 0.1 1 52 6 59 6 66 0.91 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 GIDA PF01134.17 392 9.8e-08 24.7 0.1 2 2 0.006 0.47 2.7 0.0 2 28 168 194 167 244 0.86 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_8 - 548 GIDA PF01134.17 392 3.3e-06 19.7 10.9 1 3 2.3e-07 1.8e-05 17.2 4.4 1 150 87 222 87 251 0.72 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 GIDA PF01134.17 392 3.3e-06 19.7 10.9 2 3 0.032 2.5 0.3 0.0 2 31 253 282 252 313 0.85 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 GIDA PF01134.17 392 3.3e-06 19.7 10.9 3 3 0.056 4.4 -0.5 0.1 97 150 289 348 286 385 0.69 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 Pyr_redox_2 PF07992.9 201 7.1e-39 127.3 0.0 1 1 3.1e-40 1.6e-38 126.1 0.0 1 197 87 390 87 394 0.94 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 Pyr_redox_2 PF07992.9 201 5.2e-30 98.3 0.0 1 1 2.2e-31 1.1e-29 97.2 0.0 1 198 6 305 6 307 0.90 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_6 - 500 Pyr_redox_2 PF07992.9 201 2.1e-05 18.0 0.0 1 2 0.00024 0.013 8.9 0.0 2 57 9 61 8 113 0.73 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_6 - 500 Pyr_redox_2 PF07992.9 201 2.1e-05 18.0 0.0 2 2 0.0011 0.057 6.8 0.0 62 128 177 257 144 268 0.70 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_8 - 138 Usp PF00582.21 140 8.1e-25 81.2 0.0 1 1 6e-27 9.3e-25 81.0 0.0 1 140 1 137 1 137 0.93 # 7067 # 7480 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 3_11 - 65 ATP_bind_1 PF03029.12 238 0.00013 15.1 0.0 1 1 8.7e-07 0.00014 15.0 0.0 6 34 12 40 10 56 0.93 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 3_11 - 65 SRP54 PF00448.17 196 8.2e-05 15.6 0.0 1 1 1e-06 8.2e-05 15.6 0.0 11 39 12 40 1 58 0.87 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 SRP54 PF00448.17 196 0.00028 13.9 0.0 1 1 3.6e-06 0.00028 13.9 0.0 11 35 12 36 1 37 0.84 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 6_5 - 204 AAA_15 PF13175.1 415 3.1e-22 72.7 13.7 1 1 2.6e-24 4.2e-22 72.2 13.7 1 233 3 199 3 202 0.88 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_8 - 548 NAD_binding_7 PF13241.1 103 9.4e-05 16.2 0.4 1 2 0.00022 0.035 8.0 0.0 10 38 88 116 84 184 0.90 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 NAD_binding_7 PF13241.1 103 9.4e-05 16.2 0.4 2 2 0.00092 0.15 6.0 0.1 8 45 251 312 244 386 0.55 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 17_1 - 208 AAA_17 PF13207.1 121 7.6e-06 20.3 1.4 1 1 2.1e-07 1.1e-05 19.8 1.4 23 113 7 105 5 189 0.85 # 1 # 624 # 1 # ID=17_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 3_10 - 225 AAA_17 PF13207.1 121 6.6e-05 17.3 1.4 1 1 1.9e-06 9.9e-05 16.7 1.4 23 113 24 122 19 205 0.84 # 6596 # 7270 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 3_11 - 65 AAA_17 PF13207.1 121 0.0009 13.6 0.0 1 1 1.8e-05 0.00093 13.6 0.0 9 32 12 40 10 60 0.76 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 6_5 - 204 AAA_21 PF13304.1 303 2.5e-11 37.5 6.6 1 1 2.3e-13 3.6e-11 37.0 6.6 1 148 25 179 25 198 0.79 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_11 - 65 MobB PF03205.9 140 2.7e-05 17.5 0.0 1 1 4.1e-07 3.3e-05 17.2 0.0 10 43 12 43 3 47 0.87 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 MobB PF03205.9 140 0.00018 14.8 0.0 1 1 2.3e-06 0.00018 14.8 0.0 10 34 12 36 2 37 0.85 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 16_1 - 37 LpxK PF02606.9 326 0.001 11.6 0.0 1 1 1.3e-05 0.0011 11.5 0.0 46 71 11 36 6 37 0.94 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 3_11 - 65 LpxK PF02606.9 326 0.0012 11.4 0.0 1 1 1.5e-05 0.0012 11.3 0.0 46 81 11 46 7 60 0.80 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 3_11 - 65 ArsA_ATPase PF02374.10 305 2.5e-11 36.7 0.0 1 1 4.9e-13 2.6e-11 36.6 0.0 2 49 2 50 1 61 0.84 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 ArsA_ATPase PF02374.10 305 7.6e-09 28.5 0.0 1 1 1.4e-10 7.6e-09 28.5 0.0 2 35 2 36 1 37 0.86 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 8_6 - 252 ArsA_ATPase PF02374.10 305 3.3e-08 26.4 0.1 1 1 1.2e-09 6.2e-08 25.5 0.1 20 136 4 116 1 121 0.90 # 2865 # 3620 # -1 # ID=8_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 3_9 - 449 GDI PF00996.13 439 0.00033 12.6 0.0 1 1 3.2e-06 0.00051 11.9 0.0 2 40 2 40 1 44 0.90 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 NAD_binding_8 PF13450.1 68 4.9e-06 20.1 0.8 1 2 6.8e-06 0.00035 14.1 0.0 1 36 9 43 9 66 0.82 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 NAD_binding_8 PF13450.1 68 4.9e-06 20.1 0.8 2 2 0.015 0.8 3.4 0.1 2 30 171 199 170 200 0.92 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_6 - 500 NAD_binding_8 PF13450.1 68 0.00017 15.2 0.0 1 1 7.6e-06 0.0004 14.0 0.0 1 41 11 53 11 74 0.85 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_8 - 548 NAD_binding_8 PF13450.1 68 0.0012 12.5 3.2 1 2 0.00098 0.052 7.2 1.8 1 33 90 121 90 127 0.89 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 NAD_binding_8 PF13450.1 68 0.0012 12.5 3.2 2 2 0.01 0.54 3.9 0.0 1 30 255 284 255 285 0.94 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 F420_oxidored PF03807.12 96 0.0005 14.1 0.9 1 2 0.0019 0.3 5.2 0.0 4 32 9 34 6 43 0.87 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 F420_oxidored PF03807.12 96 0.0005 14.1 0.9 2 2 0.00067 0.11 6.6 0.2 1 41 167 203 167 258 0.90 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 FAD_binding_3 PF01494.14 356 6.9e-05 15.5 0.1 1 2 0.00049 0.039 6.5 0.0 2 32 5 35 4 38 0.91 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 FAD_binding_3 PF01494.14 356 6.9e-05 15.5 0.1 2 2 0.00096 0.075 5.5 0.1 113 165 208 258 179 264 0.82 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_8 - 548 FAD_binding_3 PF01494.14 356 0.00026 13.6 0.4 1 2 0.0005 0.039 6.4 0.2 2 32 86 116 85 120 0.93 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 FAD_binding_3 PF01494.14 356 0.00026 13.6 0.4 2 2 0.0013 0.1 5.1 0.0 6 35 255 284 252 297 0.91 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 6_5 - 204 SMC_N PF02463.14 220 5.3e-15 48.7 2.3 1 1 4.2e-17 6.7e-15 48.4 2.1 1 101 2 100 2 149 0.87 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_11 - 65 VirC1 PF07015.6 231 1.9e-07 23.9 0.0 1 1 2.6e-09 2e-07 23.8 0.0 1 46 1 46 1 58 0.90 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 VirC1 PF07015.6 231 1.1e-06 21.4 0.0 1 1 1.4e-08 1.1e-06 21.4 0.0 1 35 1 35 1 37 0.93 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 3_11 - 65 Fer4_NifH PF00142.13 273 2.8e-06 20.2 0.0 1 1 5.6e-08 3e-06 20.1 0.0 8 59 10 61 3 64 0.87 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 Fer4_NifH PF00142.13 273 5e-05 16.1 0.0 1 1 9.6e-07 5e-05 16.1 0.0 8 34 10 36 2 37 0.92 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 8_6 - 252 Fer4_NifH PF00142.13 273 0.003 10.3 5.1 1 2 0.0046 0.24 4.0 0.0 18 73 3 61 1 75 0.80 # 2865 # 3620 # -1 # ID=8_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 8_6 - 252 Fer4_NifH PF00142.13 273 0.003 10.3 5.1 2 2 0.00023 0.012 8.3 0.5 157 241 151 237 141 250 0.75 # 2865 # 3620 # -1 # ID=8_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_6 - 500 OCD_Mu_crystall PF02423.10 314 0.0011 11.3 0.0 1 1 1.1e-05 0.0018 10.6 0.0 126 164 3 41 1 52 0.91 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_11 - 65 AAA_16 PF13191.1 185 0.001 12.6 0.0 1 1 6.5e-06 0.001 12.6 0.0 34 63 12 41 10 64 0.74 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 6_5 - 204 AAA_23 PF13476.1 202 5.6e-16 53.0 5.8 1 1 4.4e-18 6.9e-16 52.7 5.8 2 131 6 137 5 192 0.59 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_9 - 840 SecA_DEAD PF07517.9 266 5.6e-05 16.0 0.0 1 1 2e-06 0.00031 13.6 0.0 92 139 54 102 51 107 0.76 # 7694 # 10213 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.271 8_6 - 252 CbiA PF01656.18 195 1.1e-19 64.1 0.1 1 1 2.6e-21 1.4e-19 63.8 0.1 16 161 2 184 1 223 0.72 # 2865 # 3620 # -1 # ID=8_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 3_11 - 65 CbiA PF01656.18 195 3.3e-18 59.3 0.2 1 1 6.6e-20 3.4e-18 59.2 0.2 1 51 4 53 4 63 0.90 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 CbiA PF01656.18 195 3.1e-12 39.8 0.2 1 1 6.3e-14 3.3e-12 39.7 0.2 1 34 4 37 4 37 0.98 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 3_11 - 65 AAA_14 PF13173.1 128 0.00028 14.3 0.0 1 1 2e-06 0.00031 14.2 0.0 12 42 12 43 7 63 0.77 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 3_9 - 449 HI0933_like PF03486.9 409 2.3e-10 33.0 1.2 1 2 2.3e-06 0.00018 13.5 0.1 1 32 5 36 5 41 0.93 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 HI0933_like PF03486.9 409 2.3e-10 33.0 1.2 2 2 1.8e-07 1.4e-05 17.2 0.1 90 169 188 266 174 288 0.76 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_8 - 548 HI0933_like PF03486.9 409 0.00015 13.8 7.6 1 3 2.4e-05 0.0019 10.2 1.1 1 34 86 119 86 127 0.89 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 HI0933_like PF03486.9 409 0.00015 13.8 7.6 2 3 0.026 2.1 0.2 0.0 140 165 201 223 169 234 0.79 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 HI0933_like PF03486.9 409 0.00015 13.8 7.6 3 3 0.00094 0.074 5.0 0.4 109 164 291 348 243 354 0.73 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 6_5 - 204 AAA_29 PF13555.1 62 1.6e-07 24.3 0.0 1 1 2.8e-09 4.3e-07 23.0 0.0 4 47 6 47 3 63 0.83 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_9 - 449 FAD_binding_2 PF00890.19 417 1.3e-06 20.9 5.2 1 2 5e-07 3.9e-05 16.1 0.2 1 38 6 42 6 47 0.89 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 FAD_binding_2 PF00890.19 417 1.3e-06 20.9 5.2 2 2 0.0013 0.1 4.9 0.9 143 205 208 270 52 312 0.82 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_8 - 548 FAD_binding_2 PF00890.19 417 8e-06 18.4 2.3 1 1 1e-07 8e-06 18.4 2.3 1 36 87 121 87 127 0.91 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 Thi4 PF01946.12 230 0.00046 12.8 0.1 1 3 6.8e-05 0.011 8.4 0.1 17 59 4 45 1 60 0.83 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 Thi4 PF01946.12 230 0.00046 12.8 0.1 2 3 0.058 9.2 -1.2 0.0 18 48 166 196 153 198 0.80 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 Thi4 PF01946.12 230 0.00046 12.8 0.1 3 3 0.023 3.7 0.1 0.0 13 27 249 263 240 267 0.78 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_8 - 548 Pyr_redox_3 PF13738.1 203 9.1e-15 48.8 0.1 1 3 8.6e-05 0.0067 10.0 0.0 165 198 83 116 43 120 0.71 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 Pyr_redox_3 PF13738.1 203 9.1e-15 48.8 0.1 2 3 9.2e-13 7.3e-11 36.0 0.0 1 200 89 283 89 286 0.74 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 Pyr_redox_3 PF13738.1 203 9.1e-15 48.8 0.1 3 3 0.00018 0.014 9.0 0.0 82 147 291 357 288 390 0.69 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 Pyr_redox_3 PF13738.1 203 1.4e-09 31.9 0.2 1 2 7.1e-07 5.6e-05 16.8 0.0 1 198 8 196 8 200 0.67 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 Pyr_redox_3 PF13738.1 203 1.4e-09 31.9 0.2 2 2 0.00012 0.0093 9.5 0.0 94 163 218 292 207 306 0.74 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 6_5 - 204 MMR_HSR1 PF01926.18 116 0.00014 15.4 1.7 1 1 1.8e-06 0.00029 14.4 1.8 3 27 27 80 26 158 0.57 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_11 - 65 AAA_31 PF13614.1 157 9.6e-10 32.1 0.1 1 1 2.1e-11 1.1e-09 32.0 0.1 2 51 3 52 2 64 0.84 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 16_1 - 37 AAA_31 PF13614.1 157 4.3e-08 26.8 0.0 1 1 8.5e-10 4.4e-08 26.7 0.0 2 36 3 37 2 37 0.96 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 8_6 - 252 AAA_31 PF13614.1 157 0.00073 13.0 1.3 1 1 0.00011 0.0059 10.1 1.3 17 132 1 121 1 144 0.62 # 2865 # 3620 # -1 # ID=8_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 16_1 - 37 NTPase_1 PF03266.10 168 0.00085 12.6 0.0 1 1 6e-06 0.00095 12.4 0.0 8 30 11 33 5 34 0.92 # 3 # 113 # -1 # ID=16_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 3_9 - 449 NAD_Gly3P_dh_N PF01210.18 157 0.0012 12.2 0.0 1 2 0.0015 0.23 4.7 0.1 4 29 9 34 6 51 0.90 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 NAD_Gly3P_dh_N PF01210.18 157 0.0012 12.2 0.0 2 2 0.0012 0.19 5.0 0.0 2 39 168 205 167 234 0.83 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_8 - 548 2-Hacid_dh_C PF02826.14 178 0.00049 12.8 0.1 1 1 2e-05 0.0016 11.2 0.0 37 73 251 287 236 304 0.81 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 2-Hacid_dh_C PF02826.14 178 0.00065 12.4 0.0 1 2 0.00065 0.051 6.2 0.0 38 68 6 36 1 52 0.89 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 2-Hacid_dh_C PF02826.14 178 0.00065 12.4 0.0 2 2 0.004 0.31 3.7 0.0 37 103 166 227 151 236 0.78 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 XdhC_C PF13478.1 136 0.00013 15.9 0.0 1 2 0.00014 0.021 8.7 0.0 1 45 7 64 7 93 0.77 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 XdhC_C PF13478.1 136 0.00013 15.9 0.0 2 2 0.002 0.32 4.9 0.0 2 37 169 204 168 246 0.79 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 ApbA PF02558.11 151 2.4e-05 17.4 0.3 1 2 2.8e-05 0.0044 10.0 0.1 2 31 8 37 7 55 0.91 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 ApbA PF02558.11 151 2.4e-05 17.4 0.3 2 2 0.00093 0.15 5.1 0.0 1 47 168 215 168 249 0.76 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 6_5 - 204 DUF2813 PF11398.3 373 2.7e-12 39.9 0.6 1 1 1.9e-14 2.9e-12 39.8 0.6 1 98 1 100 1 151 0.78 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_9 - 449 Lycopene_cycl PF05834.7 374 0.00011 14.7 0.4 1 3 7.8e-06 0.0012 11.3 0.1 1 34 6 37 6 55 0.94 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 Lycopene_cycl PF05834.7 374 0.00011 14.7 0.4 2 3 0.065 10 -1.6 0.0 2 36 168 200 168 204 0.85 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 Lycopene_cycl PF05834.7 374 0.00011 14.7 0.4 3 3 0.019 3 0.1 0.0 102 141 222 264 207 286 0.74 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 6_5 - 204 ABC_tran PF00005.22 137 4.6e-05 17.3 0.9 1 1 4.7e-07 7.3e-05 16.6 0.8 2 41 15 53 14 156 0.68 # 5256 # 5867 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_8 - 548 K_oxygenase PF13434.1 341 3.5e-08 26.2 0.5 1 3 0.041 3.2 0.0 0.1 3 23 86 106 83 118 0.71 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 K_oxygenase PF13434.1 341 3.5e-08 26.2 0.5 2 3 1.6e-07 1.2e-05 17.8 0.0 140 228 205 286 193 304 0.79 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 K_oxygenase PF13434.1 341 3.5e-08 26.2 0.5 3 3 0.0019 0.15 4.4 0.1 122 161 318 352 302 387 0.74 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 1_6 - 500 K_oxygenase PF13434.1 341 0.00027 13.4 0.0 1 1 1.2e-05 0.00095 11.6 0.0 285 338 191 244 175 245 0.91 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_8 - 138 SAM_MT PF04445.8 235 2.5e-05 17.1 0.1 1 1 1.9e-07 3e-05 16.8 0.1 9 110 34 135 29 137 0.83 # 7067 # 7480 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 3_8 - 548 UDPG_MGDP_dh_N PF03721.9 185 2.6e-06 20.5 0.1 1 1 4.1e-08 6.4e-06 19.2 0.1 2 53 252 303 251 357 0.82 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_11 - 65 AAA_10 PF12846.2 304 0.00069 12.6 0.0 1 1 4.7e-06 0.00074 12.5 0.0 11 38 12 39 10 59 0.85 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_6 - 500 Mqo PF06039.10 489 1.7e-232 765.4 0.0 1 1 1.2e-234 1.9e-232 765.1 0.0 2 489 4 492 3 492 0.99 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_8 - 548 FAD_oxidored PF12831.2 428 5.9e-09 28.9 1.9 1 2 2.2e-07 1.7e-05 17.5 0.8 1 39 87 124 87 146 0.85 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 FAD_oxidored PF12831.2 428 5.9e-09 28.9 1.9 2 2 3.5e-05 0.0028 10.3 0.0 86 147 288 347 258 348 0.76 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 FAD_oxidored PF12831.2 428 7.2e-06 18.8 5.2 1 2 1.4e-06 0.00011 14.9 0.4 1 35 6 40 6 50 0.92 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 FAD_oxidored PF12831.2 428 7.2e-06 18.8 5.2 2 2 0.0016 0.13 4.8 0.1 92 145 209 260 174 267 0.74 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 DAO PF01266.19 358 4.7e-10 32.4 1.1 1 3 2.6e-07 1.3e-05 17.7 0.0 1 36 6 41 6 75 0.93 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 DAO PF01266.19 358 4.7e-10 32.4 1.1 2 3 0.0032 0.17 4.2 0.1 2 32 168 198 167 202 0.91 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 DAO PF01266.19 358 4.7e-10 32.4 1.1 3 3 0.00024 0.013 7.9 0.0 149 200 208 262 205 317 0.89 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_6 - 500 DAO PF01266.19 358 6.8e-10 31.8 0.0 1 1 1.4e-11 7.1e-10 31.8 0.0 2 213 9 257 8 426 0.87 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_8 - 548 DAO PF01266.19 358 0.00015 14.3 6.7 1 2 5.4e-06 0.00028 13.3 1.6 1 35 87 121 87 190 0.91 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 DAO PF01266.19 358 0.00015 14.3 6.7 2 2 0.016 0.81 2.0 0.1 155 201 299 348 291 407 0.82 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 2_9 - 840 ResIII PF04851.10 184 1.5e-08 28.2 0.0 1 1 9.3e-11 1.5e-08 28.2 0.0 4 83 34 114 32 161 0.85 # 7694 # 10213 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.271 4_1 - 173 RRF PF01765.14 165 0.0027 10.7 7.6 1 1 2.2e-05 0.0035 10.3 7.6 83 164 2 85 1 86 0.82 # 215 # 733 # -1 # ID=4_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_9 - 840 DEAD PF00270.24 169 2.3e-10 33.8 0.0 1 1 7.4e-12 1.2e-09 31.5 0.0 14 133 52 164 37 185 0.75 # 7694 # 10213 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_8 - 548 Pyr_redox PF00070.22 80 1.1e-25 83.5 5.4 1 2 8.4e-05 0.0044 11.0 0.5 2 31 88 117 87 119 0.95 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 Pyr_redox PF00070.22 80 1.1e-25 83.5 5.4 2 2 3.2e-24 1.7e-22 73.2 0.5 1 78 252 329 252 335 0.92 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 Pyr_redox PF00070.22 80 5.8e-23 74.7 0.8 1 2 0.074 3.9 1.6 0.0 2 31 7 36 6 39 0.91 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 Pyr_redox PF00070.22 80 5.8e-23 74.7 0.8 2 2 7.2e-23 3.8e-21 68.9 0.1 1 72 167 238 167 247 0.95 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_6 - 500 Pyr_redox PF00070.22 80 0.00016 15.7 0.0 1 2 0.00012 0.0062 10.5 0.0 2 35 9 44 8 54 0.87 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_6 - 500 Pyr_redox PF00070.22 80 0.00016 15.7 0.0 2 2 0.055 2.9 2.0 0.1 42 78 186 224 175 229 0.85 # 9080 # 10579 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_18 - 310 Ribosomal_L29 PF00831.18 58 0.0059 9.9 3.2 1 2 0.0019 0.3 4.4 0.6 6 27 105 126 101 130 0.90 # 18334 # 19263 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 2_18 - 310 Ribosomal_L29 PF00831.18 58 0.0059 9.9 3.2 2 2 0.0011 0.17 5.3 0.1 3 26 170 193 168 208 0.88 # 18334 # 19263 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 3_8 - 548 AlaDh_PNT_C PF01262.16 168 0.00046 13.3 0.3 1 2 0.055 4.3 0.4 0.1 22 50 87 115 79 118 0.87 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 548 AlaDh_PNT_C PF01262.16 168 0.00046 13.3 0.3 2 2 6e-05 0.0047 10.0 0.0 18 69 248 299 235 329 0.82 # 3415 # 5058 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 449 AlaDh_PNT_C PF01262.16 168 0.001 12.2 0.8 1 2 0.0087 0.68 3.0 0.0 21 53 5 37 1 39 0.88 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 449 AlaDh_PNT_C PF01262.16 168 0.001 12.2 0.8 2 2 0.00054 0.042 6.9 0.1 20 55 165 200 162 261 0.89 # 5184 # 6530 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.405 2_9 - 840 Helicase_C_2 PF13307.1 167 1.4e-12 41.4 0.0 1 1 6.6e-14 1e-11 38.6 0.0 66 162 399 489 354 494 0.73 # 7694 # 10213 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.271 3_11 - 65 AAA_5 PF07728.9 139 0.00032 14.0 0.0 1 1 2.3e-06 0.00036 13.8 0.0 9 51 12 55 10 63 0.89 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 3_11 - 65 APS_kinase PF01583.15 157 0.00075 12.7 0.0 1 1 5e-06 0.00079 12.6 0.0 11 50 11 49 2 58 0.79 # 7309 # 7503 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.369 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c03d2a30-561b-49f1-a285-e67f2e697459 # Target file: checkm_output/bins/pGCA_002386185.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002386185.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c03d2a30-561b-49f1-a285-e67f2e697459 checkm_output/bins/pGCA_002386185.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:55 2020 # [ok]