# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 720 Mg_chelatase PF01078.16 207 0.00011 13.3 0.0 1 1 3.9e-06 0.00018 12.5 0.0 25 105 506 587 490 610 0.72 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 ABC_ATPase PF09818.4 448 6.3e-06 16.8 0.1 1 2 0.04 1.9 -1.3 0.0 242 263 500 522 496 533 0.79 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 ABC_ATPase PF09818.4 448 6.3e-06 16.8 0.1 2 2 4.8e-07 2.2e-05 14.9 0.0 298 365 589 657 582 682 0.85 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 NB-ARC PF00931.17 287 5.8e-05 13.8 0.0 1 1 4.2e-06 0.0002 12.1 0.0 18 43 502 527 488 547 0.83 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_14 - 324 NmrA PF05368.8 233 5.8e-06 17.5 0.6 1 1 2.9e-07 1.4e-05 16.3 0.6 1 52 152 205 152 275 0.90 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 3_2 - 720 AAA_22 PF13401.1 131 8.1e-09 27.6 0.2 1 1 1.4e-09 6.5e-08 24.7 0.2 4 120 503 669 499 677 0.65 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_17 PF13207.1 121 4e-07 22.8 0.1 1 1 9.7e-08 1.1e-06 21.3 0.1 2 32 506 538 505 654 0.58 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 225 AAA_17 PF13207.1 121 2e-06 20.5 0.9 1 1 2.8e-07 3.2e-06 19.8 0.9 23 113 24 122 19 175 0.84 # 5119 # 5793 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_4 - 129 AAA_17 PF13207.1 121 7e-05 15.5 1.0 1 1 7.3e-06 8.6e-05 15.2 1.0 22 110 23 119 15 126 0.76 # 2201 # 2587 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.336 4_1 - 118 AAA_17 PF13207.1 121 0.00028 13.6 0.7 1 1 3.1e-05 0.00037 13.2 0.7 23 100 24 108 17 116 0.71 # 59 # 412 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_2 - 720 AAA_21 PF13304.1 303 4.6e-09 28.4 4.3 1 1 9.8e-11 4.6e-09 28.4 4.3 1 297 505 672 505 678 0.77 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 MobB PF03205.9 140 1.7e-05 16.4 0.0 1 1 9.9e-07 4.6e-05 15.0 0.0 3 27 506 530 504 536 0.88 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_14 - 324 ADH_zinc_N PF00107.21 130 4.7e-17 53.6 0.0 1 1 2.1e-18 1e-16 52.5 0.0 1 117 160 270 160 285 0.90 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 3_2 - 720 T2SE PF00437.15 272 2.1e-05 15.3 0.0 1 1 7.8e-07 3.6e-05 14.5 0.0 59 163 435 545 421 550 0.77 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 Zeta_toxin PF06414.7 201 9.2e-06 16.7 0.0 1 1 3.4e-07 1.6e-05 15.9 0.0 16 57 503 553 490 706 0.86 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 SMC_N PF02463.14 220 1.1e-11 36.2 2.0 1 1 1.4e-11 6.4e-10 30.4 2.0 24 212 503 687 492 693 0.59 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_16 PF13191.1 185 7.3e-06 17.9 0.0 1 1 4e-07 1.9e-05 16.6 0.0 25 52 504 532 489 669 0.72 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_18 PF13238.1 129 2e-06 20.0 0.3 1 1 5.2e-07 2.4e-05 16.5 0.3 1 23 506 554 506 686 0.71 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_14 PF13173.1 128 9.2e-06 17.5 1.7 1 2 4e-06 0.00019 13.2 0.3 4 70 505 584 502 605 0.70 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_14 PF13173.1 128 9.2e-06 17.5 1.7 2 2 0.0091 0.43 2.4 0.1 53 98 623 672 604 707 0.62 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_29 PF13555.1 62 7.6e-06 17.3 0.0 1 1 3.7e-07 1.8e-05 16.1 0.0 19 39 500 519 490 539 0.85 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA PF00004.24 132 1.3e-06 20.5 0.9 1 1 8.9e-07 4.2e-05 15.6 0.9 2 114 507 676 506 682 0.69 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 Sigma54_activat PF00158.21 168 2.6e-05 15.6 0.0 1 1 1.1e-06 5.4e-05 14.6 0.0 9 51 490 532 483 558 0.78 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 MMR_HSR1 PF01926.18 116 5.5e-05 15.0 0.3 1 1 5e-06 0.00024 13.0 0.1 2 37 506 541 505 585 0.80 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 DUF258 PF03193.11 161 5.6e-07 20.7 0.0 1 1 2.4e-08 1.1e-06 19.7 0.0 19 69 485 537 471 541 0.78 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 NTPase_1 PF03266.10 168 5.9e-05 14.6 0.2 1 2 0.00046 0.021 6.3 0.0 2 27 506 531 505 535 0.84 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 NTPase_1 PF03266.10 168 5.9e-05 14.6 0.2 2 2 0.00092 0.043 5.3 0.1 85 154 624 693 613 704 0.78 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_33 PF13671.1 143 0.00013 13.7 0.0 1 1 4.9e-06 0.00023 12.9 0.0 2 21 506 525 505 562 0.82 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_30 PF13604.1 196 0.00011 13.7 0.0 1 1 5.4e-06 0.00025 12.5 0.0 13 48 498 533 496 549 0.87 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 ABC_tran PF00005.22 137 6.4e-35 112.3 0.1 1 1 2.5e-36 1.2e-34 111.4 0.1 1 137 493 643 493 643 0.96 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_14 - 324 NAD_binding_10 PF13460.1 183 8.4e-06 17.7 0.1 1 1 2.5e-07 1.2e-05 17.2 0.1 1 38 152 192 152 241 0.87 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 3_2 - 720 AAA_10 PF12846.2 304 6.2e-08 24.2 0.6 1 3 4.5e-07 2.1e-05 15.9 0.1 4 31 506 533 504 538 0.81 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_10 PF12846.2 304 6.2e-08 24.2 0.6 2 3 0.0047 0.22 2.6 0.0 174 245 534 600 529 602 0.66 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_10 PF12846.2 304 6.2e-08 24.2 0.6 3 3 0.0052 0.25 2.5 0.0 220 271 632 682 620 705 0.85 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_14 - 324 Epimerase PF01370.16 236 0.00015 13.0 0.0 1 1 5e-06 0.00024 12.4 0.0 1 39 152 191 152 216 0.80 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 3_2 - 720 Sigma54_activ_2 PF14532.1 138 0.00014 13.8 0.0 1 1 7.5e-06 0.00035 12.5 0.0 18 49 500 531 490 562 0.76 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_14 - 324 DapB_N PF01113.15 124 4.5e-06 18.5 0.2 1 2 0.042 2 0.2 0.0 92 103 121 132 115 142 0.84 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_14 - 324 DapB_N PF01113.15 124 4.5e-06 18.5 0.2 2 2 1e-06 4.8e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 9772 # 10743 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 3_2 - 720 RNA_helicase PF00910.17 107 1.3e-05 17.2 0.2 1 1 1.3e-06 5.9e-05 15.1 0.1 2 53 507 561 506 565 0.77 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 NACHT PF05729.7 166 6.7e-05 14.4 0.2 1 1 4e-06 0.00019 13.0 0.0 3 26 506 529 504 542 0.84 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_25 PF13481.1 194 1.6e-05 16.2 0.0 1 2 2.7e-06 0.00013 13.3 0.0 29 51 499 521 482 541 0.84 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_25 PF13481.1 194 1.6e-05 16.2 0.0 2 2 0.029 1.3 0.1 0.0 131 188 621 672 591 673 0.68 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_5 PF07728.9 139 9.4e-06 17.2 0.0 1 2 1.6e-05 0.00076 11.1 0.0 3 26 507 530 506 542 0.82 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 3_2 - 720 AAA_5 PF07728.9 139 9.4e-06 17.2 0.0 2 2 0.0036 0.17 3.5 0.0 60 83 621 650 597 704 0.70 # 995 # 3154 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bb26aec8-5627-4ec5-9ad0-88fadc84b08e # Target file: checkm_output/bins/pGCA_002356675.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002356675.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bb26aec8-5627-4ec5-9ad0-88fadc84b08e checkm_output/bins/pGCA_002356675.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:52 2020 # [ok]