# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 264 MipZ PF09140.6 261 5.7e-16 48.8 0.7 1 2 3.2e-10 6.1e-09 25.8 0.1 2 41 4 43 3 72 0.91 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_11 - 264 MipZ PF09140.6 261 5.7e-16 48.8 0.7 2 2 6.1e-09 1.2e-07 21.6 0.1 56 155 80 179 74 202 0.82 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_11 - 264 YhjQ PF06564.7 244 2.9e-11 33.7 0.0 1 1 4.1e-12 7.9e-11 32.3 0.0 7 231 8 252 2 258 0.77 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_14 - 265 3HCDH_N PF02737.13 180 8.4e-05 12.8 0.1 1 1 7.5e-06 0.00014 12.1 0.1 2 45 7 53 6 99 0.76 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_14 - 265 NmrA PF05368.8 233 3.3e-05 13.7 0.5 1 1 3.6e-06 6.8e-05 12.7 0.3 3 65 10 78 8 101 0.84 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_11 - 264 ArsA_ATPase PF02374.10 305 3.2e-11 33.3 0.7 1 1 3.1e-12 5.8e-11 32.4 0.7 8 238 10 243 2 256 0.64 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_14 - 265 Shikimate_DH PF01488.15 135 1.6e-05 15.6 0.1 1 2 3.4e-06 6.4e-05 13.7 0.1 12 62 4 55 1 119 0.85 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_14 - 265 Shikimate_DH PF01488.15 135 1.6e-05 15.6 0.1 2 2 0.083 1.6 -0.6 0.0 24 56 150 182 148 190 0.82 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_11 - 264 VirC1 PF07015.6 231 3.4e-05 13.5 1.1 1 2 3.4e-05 0.00065 9.3 0.1 3 40 4 41 2 46 0.91 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_11 - 264 VirC1 PF07015.6 231 3.4e-05 13.5 1.1 2 2 0.0037 0.071 2.7 0.1 81 114 120 153 105 228 0.80 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_11 - 264 Fer4_NifH PF00142.13 273 2.5e-08 23.9 1.1 1 2 1.9e-06 3.6e-05 13.6 0.1 7 43 10 46 4 86 0.88 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_11 - 264 Fer4_NifH PF00142.13 273 2.5e-08 23.9 1.1 2 2 3.9e-05 0.00075 9.2 0.2 104 240 110 251 101 257 0.73 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_14 - 265 adh_short PF00106.20 167 4.4e-31 98.6 0.8 1 1 5.9e-32 5.6e-31 98.3 0.8 2 166 7 178 6 179 0.92 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_6 - 144 adh_short PF00106.20 167 2.9e-06 17.8 0.4 1 1 3.9e-07 3.7e-06 17.5 0.4 11 115 22 128 16 134 0.88 # 6153 # 6584 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.484 1_11 - 264 CbiA PF01656.18 195 3.1e-39 124.9 1.1 1 1 1.9e-40 3.6e-39 124.7 1.1 1 194 5 227 5 228 0.86 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_19 - 187 HI0933_like PF03486.9 409 0.00028 9.9 3.7 1 2 1e-05 0.00019 10.4 1.7 238 333 10 102 6 119 0.89 # 19385 # 19945 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.449 1_19 - 187 HI0933_like PF03486.9 409 0.00028 9.9 3.7 2 2 0.046 0.88 -1.6 0.0 317 352 136 172 126 177 0.57 # 19385 # 19945 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.449 1_14 - 265 KR PF08659.5 181 9.8e-15 45.2 0.5 1 1 8.6e-16 1.6e-14 44.5 0.5 3 156 8 167 7 186 0.83 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_11 - 264 AAA_31 PF13614.1 157 7.2e-16 49.1 1.3 1 1 2.2e-16 4.2e-15 46.6 0.6 1 153 3 157 3 160 0.68 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_14 - 265 NAD_binding_10 PF13460.1 183 9.8e-05 13.0 0.2 1 1 2.5e-05 0.00047 10.7 0.2 2 35 9 42 8 95 0.78 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_14 - 265 adh_short_C2 PF13561.1 241 2.4e-25 80.2 0.3 1 1 1.5e-26 2.9e-25 79.9 0.3 5 240 14 261 11 262 0.92 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_14 - 265 Epimerase PF01370.16 236 3.6e-08 23.6 0.9 1 1 3e-08 5.6e-07 19.7 0.9 2 166 9 186 8 196 0.70 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_11 - 264 ParA PF10609.4 81 3.7e-05 14.2 0.1 1 1 4.8e-06 9.1e-05 13.0 0.1 2 38 124 164 123 188 0.69 # 11198 # 11989 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 1_14 - 265 TrkA_N PF02254.13 116 6.6e-05 13.5 0.6 1 2 1e-05 0.00019 12.0 0.2 9 54 17 70 8 78 0.76 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 1_14 - 265 TrkA_N PF02254.13 116 6.6e-05 13.5 0.6 2 2 0.0026 0.05 4.2 0.2 9 107 41 141 40 148 0.74 # 12695 # 13489 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.514 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/87f7779e-5425-4894-a5fc-1d8215005901 # Target file: checkm_output/bins/pGCA_002356135.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002356135.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/87f7779e-5425-4894-a5fc-1d8215005901 checkm_output/bins/pGCA_002356135.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:50 2020 # [ok]