# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 653 FeoB_N PF02421.13 156 2.7e-05 15.6 0.6 1 1 1.9e-06 0.00011 13.7 0.6 31 142 53 157 7 170 0.77 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_29 - 653 AIG1 PF04548.11 212 3e-05 15.3 0.2 1 1 1.4e-06 8.1e-05 13.9 0.0 31 69 51 89 30 104 0.83 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 533 DUF87 PF01935.12 229 3.5e-09 28.9 3.7 1 1 1.3e-10 3.7e-09 28.8 0.1 12 62 219 266 211 372 0.64 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_11 - 841 DUF87 PF01935.12 229 6.3e-07 21.5 0.3 1 1 2.2e-08 6.3e-07 21.5 0.3 26 210 487 662 460 673 0.70 # 6472 # 8994 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 653 Septin PF00735.13 281 2.9e-05 15.2 0.2 1 1 1e-06 5.8e-05 14.3 0.2 6 79 6 85 3 96 0.73 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 533 AAA_22 PF13401.1 131 6.2e-08 25.0 0.1 1 1 2.4e-09 1.4e-07 23.9 0.1 3 113 227 359 223 380 0.63 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_17 - 340 DNA_methylase PF00145.12 335 1.2e-59 194.1 0.2 1 1 2.6e-61 1.5e-59 193.8 0.2 1 334 1 335 1 336 0.87 # 15129 # 16148 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_29 - 653 Miro PF08477.8 119 4.5e-07 22.5 0.1 1 1 2.7e-08 1.5e-06 20.8 0.1 3 119 8 132 6 132 0.80 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 533 T2SE PF00437.15 272 5.1e-06 17.6 0.0 1 1 1.4e-07 8e-06 17.0 0.0 115 152 215 252 64 289 0.87 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 Zeta_toxin PF06414.7 201 0.00017 12.8 0.4 1 2 1.3e-05 0.00077 10.7 0.0 14 35 226 247 215 264 0.80 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 Zeta_toxin PF06414.7 201 0.00017 12.8 0.4 2 2 0.087 4.9 -1.8 0.1 49 85 298 334 281 336 0.75 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 SMC_N PF02463.14 220 0.00053 11.3 1.8 1 1 3.2e-05 0.0018 9.6 0.3 11 49 215 253 205 347 0.62 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 AAA_16 PF13191.1 185 7.4e-06 18.1 0.0 1 1 3e-07 1.7e-05 17.0 0.0 23 119 227 337 218 375 0.62 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 AAA_23 PF13476.1 202 5.7e-06 18.9 24.4 1 1 8.9e-07 5.1e-05 15.8 16.7 6 183 212 514 210 526 0.52 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 KaiC PF06745.8 227 2.6e-07 22.1 0.5 1 1 9.7e-09 5.5e-07 21.0 0.5 19 154 228 365 220 367 0.84 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_29 - 653 TIGR03594 TIGR03594 432 7.3e-09 26.8 1.0 1 2 1.2e-09 6.7e-08 23.6 1.3 205 320 51 157 2 177 0.83 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_29 - 653 TIGR03594 TIGR03594 432 7.3e-09 26.8 1.0 2 2 0.066 3.8 -1.9 0.0 138 166 224 252 204 276 0.73 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 533 AAA_29 PF13555.1 62 1.9e-05 16.3 0.0 1 1 8e-07 4.6e-05 15.1 0.0 16 40 222 245 209 256 0.76 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 AAA PF00004.24 132 9.1e-08 24.5 0.5 1 1 7.4e-09 4.2e-07 22.4 0.5 1 80 231 346 231 381 0.72 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_29 - 653 MMR_HSR1 PF01926.18 116 2.6e-09 29.2 0.8 1 1 2.1e-10 6e-09 28.0 0.8 2 116 7 130 6 130 0.71 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 533 MMR_HSR1 PF01926.18 116 0.00015 13.9 0.5 1 1 3.9e-05 0.0011 11.1 0.5 2 91 231 378 230 414 0.65 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 DUF258 PF03193.11 161 0.00011 13.6 0.0 1 1 4e-06 0.00023 12.5 0.0 27 108 219 352 210 373 0.82 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 FtsK_SpoIIIE PF01580.13 205 4.5e-27 86.9 0.0 1 1 1.4e-28 7.7e-27 86.2 0.0 19 204 210 380 200 381 0.89 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 ABC_tran PF00005.22 137 8.1e-06 18.3 1.3 1 1 2.2e-07 1.2e-05 17.7 0.0 3 80 220 323 218 376 0.65 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_11 - 841 AAA_10 PF12846.2 304 9.5e-40 128.9 0.4 1 1 7.2e-41 2.1e-39 127.8 0.4 2 302 485 784 484 786 0.88 # 6472 # 8994 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.303 1_5 - 533 AAA_10 PF12846.2 304 1.3e-17 56.2 0.1 1 2 7.6e-12 2.2e-10 32.5 0.0 2 39 229 266 228 283 0.92 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 AAA_10 PF12846.2 304 1.3e-17 56.2 0.1 2 2 1.7e-08 4.8e-07 21.5 0.0 217 289 322 402 300 411 0.87 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 ResIII PF04851.10 184 0.00049 12.1 0.1 1 2 8.6e-06 0.00049 12.1 0.1 17 44 215 252 173 357 0.68 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 ResIII PF04851.10 184 0.00049 12.1 0.1 2 2 0.085 4.8 -1.0 3.2 52 125 424 492 409 526 0.46 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_29 - 653 GTP_EFTU_D2 PF03144.20 74 1.4e-07 23.7 1.8 1 1 1.1e-08 6.3e-07 21.6 1.7 4 74 274 338 272 338 0.93 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 533 DUF2075 PF09848.4 352 8.5e-07 20.3 1.6 1 2 2.2e-08 1.2e-06 19.7 0.1 4 114 231 357 229 378 0.75 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 DUF2075 PF09848.4 352 8.5e-07 20.3 1.6 2 2 0.055 3.1 -1.3 0.2 189 230 489 529 477 531 0.72 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 DEAD PF00270.24 169 3.1e-06 18.9 0.1 1 1 1.1e-07 6.5e-06 17.8 0.1 13 103 227 361 217 374 0.72 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 DUF853 PF05872.7 504 3.7e-05 14.3 0.0 1 1 1.1e-06 6.6e-05 13.4 0.0 21 60 228 267 212 299 0.82 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 TrwB_AAD_bind PF10412.4 386 2.5e-06 18.4 0.0 1 2 2e-07 1.2e-05 16.2 0.0 13 52 226 265 220 271 0.90 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_5 - 533 TrwB_AAD_bind PF10412.4 386 2.5e-06 18.4 0.0 2 2 0.028 1.6 -0.7 0.0 242 275 324 358 289 420 0.60 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_1 - 254 MethyltransfD12 PF02086.10 260 6.3e-30 96.5 4.0 1 1 1.9e-31 1.1e-29 95.7 4.0 2 259 12 234 12 235 0.88 # 2 # 763 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 1_29 - 653 GTP_EFTU PF00009.22 188 2.1e-62 202.0 0.1 1 1 8.3e-64 4.8e-62 200.8 0.1 1 187 2 247 2 248 0.95 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_29 - 653 Gtr1_RagA PF04670.7 232 5.2e-05 14.5 0.8 1 1 3.5e-06 0.0002 12.6 0.8 32 160 54 178 13 187 0.72 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_29 - 653 EFG_IV PF03764.13 120 4e-27 86.3 0.1 1 1 3.1e-28 1.7e-26 84.3 0.0 5 120 428 540 424 540 0.93 # 25319 # 27277 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 533 AAA_25 PF13481.1 194 2.3e-05 15.9 0.1 1 1 9e-07 5.1e-05 14.8 0.1 35 178 230 367 221 375 0.63 # 2616 # 4214 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e3fef1fe-414e-4cc2-9f83-3fc56d7447dd # Target file: checkm_output/bins/pGCA_002355795.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002355795.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e3fef1fe-414e-4cc2-9f83-3fc56d7447dd checkm_output/bins/pGCA_002355795.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:48 2020 # [ok]