# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 343 cobW PF02492.14 178 0.00022 13.2 0.1 1 1 5.6e-06 0.00043 12.3 0.1 5 52 159 210 156 222 0.73 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_17 - 343 ABC_ATPase PF09818.4 448 0.00038 11.6 0.0 1 1 7.2e-06 0.00055 11.0 0.0 247 295 157 204 123 215 0.80 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_21 - 255 MipZ PF09140.6 261 2e-11 35.9 0.2 1 1 7.9e-12 6e-10 31.1 0.2 5 129 6 147 2 193 0.68 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 YhjQ PF06564.7 244 0.00011 14.1 0.1 1 2 2.8e-05 0.0021 9.9 0.1 1 38 1 38 1 43 0.94 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 YhjQ PF06564.7 244 0.00011 14.1 0.1 2 2 0.0094 0.71 1.6 0.0 106 145 106 144 91 251 0.57 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_8 - 506 DUF87 PF01935.12 229 0.00011 14.5 0.2 1 1 2.6e-06 0.0002 13.7 0.2 29 54 247 272 234 275 0.90 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_20 - 823 AAA_22 PF13401.1 131 5.2e-08 25.6 0.0 1 2 6.9e-07 2.6e-05 16.9 0.0 5 68 467 558 463 600 0.67 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 AAA_22 PF13401.1 131 5.2e-08 25.6 0.0 2 2 0.0014 0.055 6.2 0.0 74 117 645 691 621 703 0.79 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_8 - 506 AAA_22 PF13401.1 131 1.6e-06 20.9 0.0 1 1 3.4e-07 1.3e-05 17.9 0.0 2 29 239 266 237 333 0.83 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 3_21 - 255 SRP54 PF00448.17 196 1e-05 17.5 0.3 1 2 2.2e-06 0.00017 13.6 0.4 11 51 12 51 6 73 0.85 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 SRP54 PF00448.17 196 1e-05 17.5 0.3 2 2 0.012 0.94 1.4 0.0 71 91 104 124 94 133 0.86 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_20 - 823 AAA_17 PF13207.1 121 0.00025 14.4 0.1 1 1 0.00022 0.0055 10.1 0.0 3 22 470 489 469 520 0.84 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_8 - 506 AAA_17 PF13207.1 121 0.00054 13.3 0.0 1 1 4.6e-05 0.0012 12.2 0.0 2 23 244 265 243 338 0.73 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_17 - 343 AAA_17 PF13207.1 121 0.00058 13.2 0.0 1 1 4.1e-05 0.001 12.4 0.0 2 24 157 179 156 234 0.75 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_20 - 823 AAA_21 PF13304.1 303 2.1e-05 17.1 0.0 1 2 0.0002 0.015 7.7 0.0 2 24 469 491 468 508 0.76 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 AAA_21 PF13304.1 303 2.1e-05 17.1 0.0 2 2 0.00036 0.027 6.9 0.0 230 298 624 699 551 701 0.80 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_21 - 255 MobB PF03205.9 140 8.7e-05 14.8 0.1 1 1 4.5e-06 0.00017 13.8 0.1 10 43 12 43 6 54 0.87 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_17 - 343 MobB PF03205.9 140 0.00011 14.5 0.0 1 1 7.3e-06 0.00028 13.1 0.0 3 27 157 181 155 219 0.79 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_21 - 255 LpxK PF02606.9 326 0.00061 11.3 0.1 1 1 1.2e-05 0.00094 10.6 0.1 46 71 11 36 8 49 0.94 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 ArsA_ATPase PF02374.10 305 3.2e-06 18.9 0.7 1 3 2.2e-06 8.4e-05 14.2 0.3 9 49 10 50 5 68 0.90 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 ArsA_ATPase PF02374.10 305 3.2e-06 18.9 0.7 2 3 0.029 1.1 0.7 0.0 117 140 107 131 100 144 0.79 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 ArsA_ATPase PF02374.10 305 3.2e-06 18.9 0.7 3 3 0.051 1.9 -0.1 0.0 255 282 181 208 177 214 0.84 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 2_8 - 243 ArsA_ATPase PF02374.10 305 3.5e-05 15.4 0.0 1 1 1.7e-06 6.6e-05 14.5 0.0 4 42 8 46 5 93 0.81 # 11037 # 11765 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_17 - 343 T2SE PF00437.15 272 4.3e-85 277.4 0.2 1 1 2.1e-86 5.2e-85 277.1 0.2 7 271 34 298 29 299 0.98 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 506 T2SE PF00437.15 272 1e-46 151.5 0.0 1 1 5.6e-48 1.4e-46 151.0 0.0 10 260 114 375 106 381 0.88 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_11 - 323 T2SE PF00437.15 272 1.1e-22 72.6 0.0 1 1 5.4e-24 1.4e-22 72.4 0.0 117 269 110 266 60 269 0.84 # 9353 # 10321 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_17 - 343 Zeta_toxin PF06414.7 201 3.3e-05 15.5 0.0 1 1 8.7e-07 6.6e-05 14.6 0.0 14 42 152 183 141 194 0.78 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_21 - 255 VirC1 PF07015.6 231 1.7e-06 19.8 0.3 1 2 1e-06 7.9e-05 14.3 0.2 1 40 1 40 1 57 0.90 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 VirC1 PF07015.6 231 1.7e-06 19.8 0.3 2 2 0.0023 0.18 3.3 0.0 72 116 105 149 97 161 0.77 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_20 - 823 Arch_ATPase PF01637.13 234 0.00021 13.5 0.0 1 2 3.7e-05 0.0028 9.8 0.0 23 56 469 502 466 512 0.89 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 Arch_ATPase PF01637.13 234 0.00021 13.5 0.0 2 2 0.024 1.9 0.6 0.0 85 131 622 670 564 701 0.70 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_8 - 506 AAA_16 PF13191.1 185 3.2e-06 19.8 0.0 1 1 3.4e-07 6.5e-06 18.7 0.0 6 63 227 280 225 378 0.75 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_17 - 343 AAA_16 PF13191.1 185 7.2e-05 15.3 0.6 1 1 1.1e-05 0.0002 13.9 0.1 7 51 142 181 141 280 0.75 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_20 - 823 AAA_16 PF13191.1 185 0.00013 14.5 0.0 1 1 4.7e-05 0.00089 11.8 0.0 26 51 468 493 455 504 0.83 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_21 - 255 AAA_16 PF13191.1 185 0.0005 12.6 0.0 1 1 4.4e-05 0.00083 11.9 0.0 34 148 12 115 10 125 0.79 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_8 - 506 AAA_23 PF13476.1 202 1.8e-05 17.7 0.0 1 1 4.2e-07 3.2e-05 16.8 0.0 9 45 224 267 223 290 0.87 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_8 - 506 AAA_18 PF13238.1 129 6.4e-06 19.0 0.0 1 1 3.3e-07 1.3e-05 18.1 0.0 1 41 244 287 244 316 0.69 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_11 - 323 AAA_18 PF13238.1 129 0.00034 13.4 0.4 1 1 2.2e-05 0.00082 12.2 0.4 1 15 122 136 122 165 0.89 # 9353 # 10321 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_21 - 255 CbiA PF01656.18 195 3.7e-34 110.3 0.0 1 1 1.1e-35 4.2e-34 110.2 0.0 3 178 6 204 4 223 0.81 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 2_8 - 243 CbiA PF01656.18 195 1e-06 20.8 0.1 1 1 3.8e-08 1.5e-06 20.3 0.1 2 48 8 54 7 135 0.74 # 11037 # 11765 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_11 - 323 KaiC PF06745.8 227 2.3e-05 16.1 0.4 1 1 7e-07 5.3e-05 14.9 0.4 21 59 121 157 117 172 0.81 # 9353 # 10321 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_8 - 506 AAA_14 PF13173.1 128 0.00014 14.3 0.0 1 1 3.5e-06 0.00027 13.4 0.0 3 72 242 320 240 355 0.67 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_8 - 506 AAA_29 PF13555.1 62 4.2e-07 22.0 0.1 1 1 3.8e-08 9.6e-07 20.9 0.1 21 56 239 274 229 280 0.76 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_20 - 823 AAA_29 PF13555.1 62 9.2e-05 14.5 0.0 1 1 8.1e-06 0.00021 13.4 0.0 23 44 467 487 459 497 0.80 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 343 AAA_29 PF13555.1 62 0.00013 14.1 0.0 1 1 9.5e-06 0.00024 13.2 0.0 22 44 154 175 142 178 0.83 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 506 AAA PF00004.24 132 0.00035 13.3 0.0 1 1 3.1e-05 0.0012 11.6 0.0 1 73 244 324 244 350 0.75 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_20 - 823 AAA PF00004.24 132 0.00075 12.3 0.2 1 2 0.00057 0.022 7.5 0.0 2 22 470 490 469 510 0.81 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 AAA PF00004.24 132 0.00075 12.3 0.2 2 2 0.06 2.3 1.0 0.0 49 114 646 703 641 715 0.73 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 343 MMR_HSR1 PF01926.18 116 0.00035 13.1 0.1 1 1 1.1e-05 0.00083 11.9 0.0 2 22 157 177 156 205 0.86 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 2_5 - 625 TraG-D_C PF12696.2 128 8.9e-36 115.1 0.0 1 1 4e-37 1.5e-35 114.4 0.0 1 127 430 550 430 551 0.88 # 6169 # 8043 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_20 - 823 TraG-D_C PF12696.2 128 7.8e-05 15.1 0.0 1 1 9.2e-06 0.00035 13.0 0.0 3 75 660 736 658 768 0.74 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_21 - 255 AAA_31 PF13614.1 157 7.4e-07 21.7 0.0 1 1 6e-08 4.6e-06 19.2 0.0 4 142 5 140 2 154 0.73 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_8 - 506 AAA_33 PF13671.1 143 0.00056 12.3 0.0 1 1 2.1e-05 0.0016 10.8 0.0 1 23 243 265 243 355 0.80 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_8 - 506 AAA_30 PF13604.1 196 5.4e-05 15.3 0.0 1 1 1.5e-06 0.00012 14.2 0.0 4 39 227 262 224 286 0.88 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_8 - 506 FtsK_SpoIIIE PF01580.13 205 2e-06 19.9 0.1 1 1 1.5e-07 3.7e-06 19.0 0.1 40 62 243 265 223 270 0.83 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_20 - 823 FtsK_SpoIIIE PF01580.13 205 2.4e-06 19.7 0.1 1 2 0.095 2.4 0.1 0.1 145 192 326 385 278 392 0.62 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 FtsK_SpoIIIE PF01580.13 205 2.4e-06 19.7 0.1 2 2 2.1e-06 5.2e-05 15.3 0.0 30 64 456 491 433 510 0.76 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 343 FtsK_SpoIIIE PF01580.13 205 4.8e-06 18.7 0.0 1 1 3.7e-07 9.3e-06 17.7 0.0 39 64 154 180 137 223 0.75 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_17 - 343 Dynamin_N PF00350.18 168 0.00028 13.3 0.3 1 1 6.5e-06 0.00049 12.5 0.3 1 21 157 177 157 179 0.93 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_20 - 823 ABC_tran PF00005.22 137 3.7e-05 16.6 0.0 1 1 5.4e-06 0.0002 14.2 0.0 5 39 460 494 458 620 0.80 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 343 ABC_tran PF00005.22 137 0.0004 13.2 0.0 1 1 1.6e-05 0.00061 12.6 0.0 8 37 151 180 119 277 0.85 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_11 - 323 AAA_19 PF13245.1 76 6.8e-06 18.3 0.8 1 1 9.1e-07 2.3e-05 16.7 0.4 3 35 110 144 108 175 0.80 # 9353 # 10321 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_21 - 255 AAA_19 PF13245.1 76 3e-05 16.3 1.7 1 2 0.00043 0.011 8.1 0.1 20 48 12 36 10 58 0.81 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 AAA_19 PF13245.1 76 3e-05 16.3 1.7 2 2 0.0012 0.03 6.7 0.0 7 35 113 142 107 166 0.83 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_20 - 823 AAA_19 PF13245.1 76 0.00014 14.2 0.0 1 1 1.9e-05 0.00048 12.4 0.0 14 37 470 492 462 502 0.80 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 AAA_10 PF12846.2 304 1.1e-34 112.7 0.0 1 1 9.6e-36 1.8e-34 112.0 0.0 2 301 467 741 466 744 0.88 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 343 AAA_10 PF12846.2 304 2.9e-05 16.1 0.0 1 1 3e-06 5.6e-05 15.1 0.0 2 38 155 194 154 212 0.85 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 506 AAA_10 PF12846.2 304 4.5e-05 15.5 0.0 1 1 4.5e-06 8.6e-05 14.5 0.0 4 33 244 273 241 289 0.85 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_11 - 323 AAA_10 PF12846.2 304 0.0007 11.5 0.3 1 1 4.9e-05 0.00094 11.1 0.3 3 38 121 158 119 278 0.90 # 9353 # 10321 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_20 - 823 Zot PF05707.7 193 9.4e-06 17.7 0.0 1 2 0.02 1.5 0.7 0.0 3 15 469 481 468 492 0.86 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 Zot PF05707.7 193 9.4e-06 17.7 0.0 2 2 1.9e-06 0.00014 13.8 0.0 79 127 657 701 622 761 0.85 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_8 - 506 Viral_helicase1 PF01443.13 234 3.8e-05 15.8 0.0 1 1 9.8e-07 7.5e-05 14.8 0.0 3 39 246 285 244 332 0.71 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 3_13 - 261 Methyltransf_27 PF13708.1 194 6.1e-65 210.9 0.0 1 1 1e-66 7.8e-65 210.5 0.0 2 194 71 255 70 255 0.94 # 5275 # 6057 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_5 - 625 TrwB_AAD_bind PF10412.4 386 5.8e-31 99.9 0.0 1 1 7.2e-31 1.4e-29 95.4 0.0 16 366 162 550 150 557 0.75 # 6169 # 8043 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_8 - 506 TrwB_AAD_bind PF10412.4 386 8.8e-05 13.7 0.2 1 1 8.1e-06 0.00015 12.9 0.2 17 41 243 267 232 274 0.83 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_17 - 343 TrwB_AAD_bind PF10412.4 386 0.0001 13.4 0.0 1 1 1e-05 0.0002 12.6 0.0 15 54 154 195 150 200 0.85 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_21 - 255 TrwB_AAD_bind PF10412.4 386 0.00061 10.9 0.0 1 1 4.9e-05 0.00093 10.3 0.0 25 52 12 39 9 53 0.85 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 2_5 - 625 T4SS-DNA_transf PF02534.9 469 1.4e-134 441.6 0.0 1 1 2.5e-136 1.9e-134 441.2 0.0 24 463 123 601 103 606 0.94 # 6169 # 8043 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 3_21 - 255 ArgK PF03308.11 267 5.1e-06 17.9 0.1 1 2 2.6e-06 0.0002 12.7 0.2 38 68 11 41 2 47 0.85 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 3_21 - 255 ArgK PF03308.11 267 5.1e-06 17.9 0.1 2 2 0.0029 0.22 2.7 0.0 103 145 98 141 96 150 0.74 # 11359 # 12123 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 1_17 - 343 GTP_EFTU PF00009.22 188 0.00043 12.3 0.0 1 1 1.2e-05 0.00088 11.2 0.0 4 31 155 182 153 197 0.89 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 506 NACHT PF05729.7 166 0.00017 13.8 0.5 1 2 0.014 1.1 1.4 0.0 59 92 15 48 3 95 0.80 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_8 - 506 NACHT PF05729.7 166 0.00017 13.8 0.5 2 2 3.8e-05 0.0029 9.8 0.1 3 24 244 265 242 274 0.87 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_29 - 89 Lambda_tail_I PF06805.7 82 0.00036 12.9 0.0 1 1 5.7e-06 0.00043 12.7 0.0 14 55 28 76 15 86 0.75 # 25729 # 25995 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.633 1_20 - 823 AAA_25 PF13481.1 194 0.00023 13.1 0.1 1 2 3.4e-05 0.0026 9.7 0.0 31 51 465 484 446 490 0.80 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_20 - 823 AAA_25 PF13481.1 194 0.00023 13.1 0.1 2 2 0.028 2.1 0.2 0.0 126 184 643 694 562 699 0.72 # 16915 # 19383 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_17 - 343 AAA_28 PF13521.1 163 0.00029 13.3 0.0 1 1 7.2e-06 0.00055 12.4 0.0 2 19 157 174 156 197 0.87 # 15226 # 16254 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 506 AAA_5 PF07728.9 139 0.00023 13.4 0.0 1 1 6.1e-06 0.00046 12.4 0.0 2 80 244 324 243 332 0.73 # 6183 # 7700 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b47416d5-85e3-4327-aec6-76273be2d000 # Target file: checkm_output/bins/pGCA_002355475.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002355475.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b47416d5-85e3-4327-aec6-76273be2d000 checkm_output/bins/pGCA_002355475.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:48 2020 # [ok]