# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_7 - 102 Saccharop_dh PF03435.13 386 0.00069 11.6 0.1 1 1 6.8e-06 0.00074 11.5 0.1 46 96 8 58 2 91 0.82 # 6817 # 7122 # 1 # ID=3_7;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 1_28 - 653 FeoB_N PF02421.13 156 5.2e-05 15.6 0.6 1 1 1.9e-06 0.0002 13.7 0.6 31 142 53 157 7 170 0.77 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 653 AIG1 PF04548.11 212 5.8e-05 15.3 0.2 1 1 1.4e-06 0.00016 13.9 0.0 31 69 51 89 30 104 0.83 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 530 DUF87 PF01935.12 229 8e-09 28.6 0.2 1 1 1.5e-10 8e-09 28.6 0.2 12 62 216 263 208 366 0.66 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_11 - 842 DUF87 PF01935.12 229 5.1e-07 22.7 2.9 1 1 1.1e-08 6.2e-07 22.4 0.2 26 210 488 663 461 674 0.70 # 6474 # 8999 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_28 - 653 Septin PF00735.13 281 5.6e-05 15.2 0.2 1 1 1e-06 0.00011 14.3 0.2 6 79 6 85 3 96 0.73 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 530 AAA_22 PF13401.1 131 9.4e-08 25.3 0.1 1 1 1.9e-09 2.1e-07 24.2 0.1 3 120 224 370 220 378 0.64 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_16 - 340 DNA_methylase PF00145.12 335 5.9e-60 196.1 0.2 1 1 6.4e-62 7e-60 195.8 0.2 1 334 1 335 1 336 0.87 # 15137 # 16156 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.323 1_28 - 653 Miro PF08477.8 119 8.5e-07 22.5 0.1 1 1 2.7e-08 2.9e-06 20.8 0.1 3 119 8 132 6 132 0.80 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 530 T2SE PF00437.15 272 9.9e-06 17.6 0.0 1 1 1.4e-07 1.5e-05 17.0 0.0 115 152 212 249 61 286 0.87 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 Zeta_toxin PF06414.7 201 0.00031 12.9 0.4 1 2 1.3e-05 0.0015 10.7 0.0 14 35 223 244 212 261 0.80 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 Zeta_toxin PF06414.7 201 0.00031 12.9 0.4 2 2 0.086 9.4 -1.7 0.1 49 85 295 331 278 333 0.75 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 SMC_N PF02463.14 220 0.0011 11.3 1.8 1 1 3e-05 0.0032 9.7 0.3 11 49 212 250 202 359 0.63 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 AAA_16 PF13191.1 185 1.5e-05 18.0 0.0 1 1 3e-07 3.3e-05 17.0 0.0 23 119 224 334 215 372 0.62 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 AAA_23 PF13476.1 202 6.8e-07 22.8 1.1 1 2 1.2e-08 6.8e-07 22.8 1.1 6 128 209 341 207 358 0.58 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 AAA_23 PF13476.1 202 6.8e-07 22.8 1.1 2 2 0.0052 0.28 4.5 9.1 40 185 368 513 361 523 0.47 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_59 - 165 AAA_23 PF13476.1 202 0.029 7.7 21.9 1 1 0.0007 0.038 7.3 21.9 96 197 22 144 3 160 0.62 # 58889 # 59383 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.220 1_38 - 263 adh_short PF00106.20 167 9.2e-24 77.2 0.0 1 1 1.5e-25 1.6e-23 76.5 0.0 1 166 7 173 7 174 0.90 # 33312 # 34100 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 530 KaiC PF06745.8 227 5.2e-07 22.0 0.5 1 1 1e-08 1.1e-06 20.9 0.5 19 154 225 362 217 363 0.84 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_28 - 653 TIGR03594 TIGR03594 432 1.4e-08 26.8 1.0 1 2 1.2e-09 1.3e-07 23.6 1.3 205 320 51 157 2 177 0.83 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 653 TIGR03594 TIGR03594 432 1.4e-08 26.8 1.0 2 2 0.066 7.2 -1.9 0.0 138 166 224 252 204 276 0.73 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 530 AAA_29 PF13555.1 62 3.7e-05 16.3 0.0 1 1 7.9e-07 8.7e-05 15.1 0.0 16 40 219 242 206 253 0.76 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 AAA PF00004.24 132 1.9e-07 24.4 0.4 1 1 7.5e-09 8.2e-07 22.3 0.4 1 80 228 343 228 378 0.73 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_28 - 653 MMR_HSR1 PF01926.18 116 4.9e-09 29.2 0.8 1 1 2.1e-10 1.2e-08 28.0 0.8 2 116 7 130 6 130 0.71 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 530 MMR_HSR1 PF01926.18 116 0.00018 14.5 0.6 1 1 2.5e-05 0.0014 11.7 0.6 2 91 228 375 227 411 0.67 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 DUF258 PF03193.11 161 0.00022 13.5 0.0 1 1 4.1e-06 0.00045 12.5 0.0 27 104 216 347 207 366 0.81 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 FtsK_SpoIIIE PF01580.13 205 1.7e-27 89.2 0.0 1 1 2.6e-29 2.9e-27 88.5 0.0 19 204 207 377 197 378 0.89 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_52 - 1869 KH_4 PF13083.1 73 0.00043 13.0 0.1 1 1 3.2e-05 0.0035 10.1 0.1 13 47 1141 1175 1131 1175 0.91 # 47055 # 52661 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_5 - 530 ABC_tran PF00005.22 137 1.6e-05 18.2 1.3 1 1 2.2e-07 2.4e-05 17.7 0.0 3 80 217 316 215 372 0.65 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_11 - 842 AAA_10 PF12846.2 304 1.6e-40 132.4 0.5 1 1 6.3e-42 3.4e-40 131.3 0.5 2 301 486 784 485 787 0.89 # 6474 # 8999 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_5 - 530 AAA_10 PF12846.2 304 3.5e-18 59.0 0.1 1 2 7.5e-12 4.1e-10 32.5 0.0 2 39 226 263 225 280 0.92 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 AAA_10 PF12846.2 304 3.5e-18 59.0 0.1 2 2 2.3e-09 1.3e-07 24.4 0.0 217 289 319 399 297 408 0.87 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_38 - 263 adh_short_C2 PF13561.1 241 8.6e-31 100.5 0.4 1 1 9.1e-33 9.9e-31 100.3 0.4 5 240 15 246 12 247 0.92 # 33312 # 34100 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 530 ResIII PF04851.10 184 0.00095 12.0 0.1 1 2 8.7e-06 0.00095 12.0 0.1 17 44 212 250 177 358 0.67 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 ResIII PF04851.10 184 0.00095 12.0 0.1 2 2 0.084 9.2 -1.0 3.2 52 125 421 489 406 523 0.46 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_28 - 653 GTP_EFTU_D2 PF03144.20 74 2.7e-07 23.7 1.8 1 1 2.2e-08 1.2e-06 21.6 1.7 4 74 274 338 272 338 0.93 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 4_1 - 204 GTP_EFTU_D2 PF03144.20 74 0.00031 13.9 0.0 1 1 1.6e-05 0.0009 12.4 0.0 15 69 15 89 14 91 0.84 # 3 # 614 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.291 1_5 - 530 DUF2075 PF09848.4 352 1.7e-06 20.2 1.4 1 2 2.6e-08 2.9e-06 19.5 0.1 4 112 228 352 226 366 0.75 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 DUF2075 PF09848.4 352 1.7e-06 20.2 1.4 2 2 0.054 5.9 -1.3 0.2 189 230 486 526 474 528 0.72 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 DEAD PF00270.24 169 7.2e-06 18.6 0.1 1 1 1.4e-07 1.5e-05 17.5 0.1 13 78 224 328 214 366 0.73 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 DUF853 PF05872.7 504 7e-05 14.3 0.0 1 1 1.1e-06 0.00012 13.5 0.0 21 60 225 264 209 296 0.82 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 TrwB_AAD_bind PF10412.4 386 2.7e-06 19.2 0.1 1 2 2e-07 2.2e-05 16.2 0.0 13 52 223 262 217 268 0.90 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_5 - 530 TrwB_AAD_bind PF10412.4 386 2.7e-06 19.2 0.1 2 2 0.021 2.3 -0.3 0.0 255 280 348 374 308 380 0.73 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 1_1 - 251 MethyltransfD12 PF02086.10 260 4.7e-29 94.6 5.4 1 1 8.5e-31 9.3e-29 93.6 5.4 2 259 9 231 9 232 0.85 # 1 # 753 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.291 1_28 - 653 GTP_EFTU PF00009.22 188 4e-62 202.0 0.1 1 1 8.3e-64 9.1e-62 200.8 0.1 1 187 2 247 2 248 0.95 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 653 Gtr1_RagA PF04670.7 232 0.0001 14.5 0.8 1 1 3.5e-06 0.00038 12.6 0.8 32 160 54 178 13 187 0.72 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 653 EFG_IV PF03764.13 120 7.7e-27 86.3 0.1 1 1 3.1e-28 3.3e-26 84.3 0.0 5 120 428 540 424 540 0.93 # 25195 # 27153 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 530 AAA_25 PF13481.1 194 1.3e-05 17.7 0.1 1 1 2.6e-07 2.8e-05 16.6 0.1 35 184 227 370 218 374 0.67 # 2614 # 4203 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/553c789b-d7c7-4c8f-9390-cbcfb37000f2 # Target file: checkm_output/bins/pGCA_002312985.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002312985.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/553c789b-d7c7-4c8f-9390-cbcfb37000f2 checkm_output/bins/pGCA_002312985.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:45 2020 # [ok]