# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 35 Eno-Rase_NADH_b PF12242.3 78 4.4e-05 15.5 0.0 1 1 7.3e-07 4.4e-05 15.5 0.0 40 55 10 25 2 32 0.87 # 17639 # 17743 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.400 3_10 - 265 MipZ PF09140.6 261 2.9e-11 35.1 0.0 1 2 1.3e-08 7.8e-07 20.6 0.0 2 49 4 51 3 85 0.74 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 MipZ PF09140.6 261 2.9e-11 35.1 0.0 2 2 3.5e-06 0.00022 12.6 0.0 79 125 104 150 84 176 0.81 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 YhjQ PF06564.7 244 1.1e-09 30.1 0.0 1 1 5e-11 3.1e-09 28.7 0.0 3 145 4 151 2 254 0.73 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 4_1 - 561 NB-ARC PF00931.17 287 0.00053 11.0 0.4 1 2 0.0035 0.21 2.5 0.0 22 36 349 363 337 371 0.88 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_1 - 561 NB-ARC PF00931.17 287 0.00053 11.0 0.4 2 2 0.00024 0.015 6.3 0.1 88 143 461 518 426 536 0.76 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_2 - 537 AAA_22 PF13401.1 131 1.1e-06 21.0 0.1 1 1 3.5e-07 7.2e-06 18.4 0.0 4 127 353 515 350 519 0.65 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 5_2 - 252 AAA_22 PF13401.1 131 1.9e-05 17.1 0.7 1 1 4.9e-06 0.0001 14.7 0.7 3 123 26 193 24 201 0.68 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_1 - 561 AAA_22 PF13401.1 131 2.3e-05 16.8 0.7 1 1 1.4e-05 0.00028 13.3 0.1 7 100 349 488 345 515 0.68 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 3_10 - 265 ATP_bind_1 PF03029.12 238 2.4e-07 22.7 0.2 1 1 9.2e-09 5.6e-07 21.5 0.2 6 160 13 197 11 261 0.75 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 SRP54 PF00448.17 196 6.7e-05 14.6 0.0 1 2 2e-05 0.0012 10.5 0.0 11 38 13 41 3 44 0.85 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 SRP54 PF00448.17 196 6.7e-05 14.6 0.0 2 2 0.013 0.8 1.3 0.0 49 91 91 131 87 179 0.67 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 4_2 - 537 AAA_15 PF13175.1 415 2.1e-09 29.1 0.2 1 2 0.0014 0.041 5.0 0.0 19 42 345 373 325 408 0.77 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_2 - 537 AAA_15 PF13175.1 415 2.1e-09 29.1 0.2 2 2 9.5e-09 2.9e-07 22.0 0.2 369 414 469 515 462 516 0.92 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 5_2 - 252 AAA_15 PF13175.1 415 3.7e-05 15.0 2.8 1 2 0.00011 0.0033 8.6 0.0 17 40 21 45 4 50 0.81 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 AAA_15 PF13175.1 415 3.7e-05 15.0 2.8 2 2 0.0006 0.018 6.2 1.1 336 408 130 192 66 199 0.76 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_2 - 537 AAA_17 PF13207.1 121 0.00011 15.3 0.0 1 1 3.7e-06 0.00022 14.3 0.0 3 26 357 379 355 480 0.88 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_2 - 537 AAA_21 PF13304.1 303 1.6e-14 46.7 0.1 1 2 1.4e-05 0.00028 13.1 0.0 2 21 356 375 355 392 0.92 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_2 - 537 AAA_21 PF13304.1 303 1.6e-14 46.7 0.1 2 2 3.1e-11 6.3e-10 31.6 0.0 231 301 447 515 422 517 0.85 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 5_2 - 252 AAA_21 PF13304.1 303 4.5e-13 41.9 1.3 1 2 1.9e-08 3.8e-07 22.5 0.4 1 28 29 58 29 108 0.72 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 AAA_21 PF13304.1 303 4.5e-13 41.9 1.3 2 2 1.4e-07 2.8e-06 19.6 0.1 219 280 90 176 57 188 0.66 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_1 - 561 AAA_21 PF13304.1 303 3.5e-05 16.0 0.3 1 1 6.2e-05 0.0013 10.9 0.3 8 297 355 511 350 513 0.68 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_2 - 537 Miro PF08477.8 119 0.00027 13.7 0.1 1 1 1.3e-05 0.00079 12.2 0.1 3 35 357 385 356 513 0.86 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 3_10 - 265 ArsA_ATPase PF02374.10 305 1.6e-12 39.2 0.1 1 2 3e-13 1.8e-11 35.8 0.0 5 173 7 172 3 184 0.67 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 ArsA_ATPase PF02374.10 305 1.6e-12 39.2 0.1 2 2 0.083 5.1 -1.8 0.0 263 297 198 232 189 238 0.76 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 5_2 - 252 Zeta_toxin PF06414.7 201 0.00033 12.0 0.0 1 1 9.4e-06 0.00058 11.2 0.0 14 55 25 67 13 95 0.84 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 SMC_N PF02463.14 220 5.7e-12 37.5 1.4 1 1 5.3e-11 1.1e-09 30.0 1.4 17 195 19 190 3 216 0.66 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_2 - 537 SMC_N PF02463.14 220 2.1e-10 32.4 1.4 1 2 0.0039 0.079 4.3 0.0 24 41 353 370 336 374 0.84 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_2 - 537 SMC_N PF02463.14 220 2.1e-10 32.4 1.4 2 2 5.7e-10 1.2e-08 26.7 0.6 134 213 450 527 393 533 0.85 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_1 - 561 SMC_N PF02463.14 220 3.7e-09 28.3 3.0 1 2 0.021 0.42 2.0 0.5 24 41 346 363 332 369 0.77 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_1 - 561 SMC_N PF02463.14 220 3.7e-09 28.3 3.0 2 2 8.3e-10 1.7e-08 26.1 0.1 135 202 449 516 411 531 0.78 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 3_10 - 265 VirC1 PF07015.6 231 0.00011 13.5 0.0 1 2 0.00037 0.023 5.9 0.0 3 44 4 46 2 59 0.78 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 VirC1 PF07015.6 231 0.00011 13.5 0.0 2 2 0.00045 0.027 5.7 0.0 60 127 101 164 66 183 0.79 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 Fer4_NifH PF00142.13 273 9.8e-09 26.9 0.0 1 1 1.1e-09 6.6e-08 24.2 0.0 7 233 10 243 4 261 0.72 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 5_2 - 252 Arch_ATPase PF01637.13 234 0.00017 13.5 0.2 1 1 3.4e-05 0.0021 9.9 0.2 18 61 25 66 17 231 0.69 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_2 - 537 AAA_16 PF13191.1 185 1.8e-06 20.2 0.2 1 1 3.3e-07 6.7e-06 18.4 0.0 23 166 352 520 341 534 0.50 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_1 - 561 AAA_16 PF13191.1 185 3e-06 19.5 0.5 1 1 3.6e-07 7.3e-06 18.3 0.2 25 164 347 489 333 509 0.56 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 5_2 - 252 AAA_16 PF13191.1 185 3.3e-05 16.1 0.1 1 2 3.5e-05 0.00071 11.8 0.0 23 59 26 63 9 85 0.73 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 AAA_16 PF13191.1 185 3.3e-05 16.1 0.1 2 2 0.025 0.5 2.5 0.0 112 163 150 200 109 215 0.65 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 AAA_23 PF13476.1 202 6.5e-09 28.6 0.5 1 1 1.4e-10 8.7e-09 28.1 0.5 10 167 14 182 4 226 0.67 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_2 - 537 AAA_18 PF13238.1 129 2e-05 17.1 0.6 1 1 3e-05 0.0009 11.8 0.6 2 23 357 418 357 529 0.53 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_1 - 561 AAA_18 PF13238.1 129 0.00018 14.1 0.8 1 2 9.5e-05 0.0029 10.1 0.6 1 15 349 363 349 387 0.88 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_1 - 561 AAA_18 PF13238.1 129 0.00018 14.1 0.8 2 2 0.072 2.2 0.8 0.0 55 86 384 414 381 423 0.83 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_13 - 158 adh_short PF00106.20 167 5.7e-18 57.6 0.1 1 1 1.1e-19 6.8e-18 57.3 0.1 45 161 7 127 2 133 0.89 # 17772 # 18245 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 3_10 - 265 CbiA PF01656.18 195 2e-27 88.0 0.0 1 1 4.5e-29 2.7e-27 87.6 0.0 1 171 5 203 5 227 0.71 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 5_2 - 252 AAA_14 PF13173.1 128 1.1e-06 20.8 0.6 1 2 2.3e-05 0.00069 11.8 0.0 2 52 27 78 26 96 0.72 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 AAA_14 PF13173.1 128 1.1e-06 20.8 0.6 2 2 0.00068 0.021 7.0 0.4 29 72 117 164 106 232 0.78 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 3_10 - 265 AAA_14 PF13173.1 128 1.7e-05 16.9 0.0 1 1 1.4e-06 4.3e-05 15.7 0.0 13 73 14 79 12 129 0.78 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 6_6 - 105 Methyltransf_30 PF05430.6 124 0.0003 12.7 0.2 1 2 0.019 1.2 1.1 0.0 57 74 29 49 2 60 0.67 # 2782 # 3096 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_6 - 105 Methyltransf_30 PF05430.6 124 0.0003 12.7 0.2 2 2 3.9e-05 0.0024 9.8 0.0 34 60 66 92 58 96 0.92 # 2782 # 3096 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 5_2 - 252 AAA_29 PF13555.1 62 4.3e-07 21.7 0.1 1 1 4e-08 8.1e-07 20.8 0.1 17 40 22 44 13 58 0.82 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_1 - 561 AAA_29 PF13555.1 62 9.9e-06 17.3 0.1 1 1 1.2e-06 2.4e-05 16.1 0.1 12 40 336 363 334 365 0.84 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_2 - 537 AAA_29 PF13555.1 62 1.7e-05 16.6 0.0 1 1 2e-06 4.1e-05 15.3 0.0 18 40 349 370 331 380 0.81 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_2 - 537 AAA PF00004.24 132 0.00064 12.2 0.6 1 1 6e-05 0.0037 9.7 0.6 3 74 358 486 356 524 0.51 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 1_13 - 158 KR PF08659.5 181 7.3e-07 21.2 0.1 1 1 1.4e-08 8.5e-07 21.0 0.1 54 162 16 127 3 144 0.88 # 17772 # 18245 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_3 - 442 Pyr_redox_3 PF13738.1 203 1.4e-10 33.7 0.0 1 2 9.1e-10 5.5e-08 25.3 0.0 77 199 93 229 54 232 0.71 # 3375 # 4700 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 1_3 - 442 Pyr_redox_3 PF13738.1 203 1.4e-10 33.7 0.0 2 2 0.00051 0.031 6.5 0.0 96 144 298 354 245 384 0.70 # 3375 # 4700 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 3_1 - 305 MMR_HSR1 PF01926.18 116 7.4e-05 14.9 0.1 1 1 7.4e-06 0.00022 13.4 0.1 5 92 34 157 31 192 0.60 # 200 # 1114 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.417 4_2 - 537 MMR_HSR1 PF01926.18 116 0.0003 13.0 0.1 1 1 3e-05 0.0009 11.4 0.1 3 45 357 456 355 532 0.55 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_2 - 537 DUF258 PF03193.11 161 3e-07 22.0 0.0 1 1 2.4e-08 4.9e-07 21.3 0.0 21 59 338 377 322 431 0.75 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 5_2 - 252 DUF258 PF03193.11 161 0.0001 13.7 0.1 1 1 8.8e-06 0.00018 12.9 0.1 23 54 14 46 3 88 0.83 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_1 - 561 DUF258 PF03193.11 161 0.00047 11.6 0.0 1 1 5.1e-05 0.001 10.5 0.0 31 64 342 375 318 380 0.79 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 3_10 - 265 AAA_31 PF13614.1 157 1.3e-10 33.7 0.0 1 2 3.4e-08 1e-06 21.0 0.0 1 44 3 47 3 78 0.91 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_10 - 265 AAA_31 PF13614.1 157 1.3e-10 33.7 0.0 2 2 4.6e-05 0.0014 10.8 0.0 111 152 117 157 103 162 0.82 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 3_1 - 305 AAA_31 PF13614.1 157 0.00034 12.8 0.6 1 1 4.8e-05 0.0015 10.7 0.3 10 125 37 149 33 156 0.63 # 200 # 1114 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.417 5_2 - 252 AAA_33 PF13671.1 143 0.00049 12.2 0.0 1 1 1.3e-05 0.00078 11.6 0.0 4 32 32 64 29 119 0.71 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 AAA_30 PF13604.1 196 0.00015 13.6 0.0 1 1 5e-06 0.00031 12.6 0.0 16 50 25 59 14 63 0.82 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_1 - 561 ABC_tran PF00005.22 137 5.8e-33 106.3 0.1 1 1 5.9e-34 1.2e-32 105.3 0.1 2 137 337 485 336 485 0.90 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 5_2 - 252 ABC_tran PF00005.22 137 9.2e-31 99.2 0.0 1 1 6.7e-32 1.4e-30 98.6 0.0 2 137 18 164 17 164 0.94 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_2 - 537 ABC_tran PF00005.22 137 2.9e-28 91.1 0.0 1 1 2.7e-29 5.4e-28 90.2 0.0 5 137 347 481 343 481 0.89 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 1_3 - 442 K_oxygenase PF13434.1 341 3.5e-117 383.3 0.0 1 1 6.8e-119 4.2e-117 383.0 0.0 3 340 6 346 4 347 0.95 # 3375 # 4700 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 4_2 - 537 AAA_10 PF12846.2 304 1.3e-05 16.9 0.3 1 2 1.2e-05 0.00071 11.2 0.1 4 29 356 381 353 405 0.87 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 4_2 - 537 AAA_10 PF12846.2 304 1.3e-05 16.9 0.3 2 2 0.0025 0.15 3.5 0.0 220 264 470 514 451 522 0.88 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 1_13 - 158 adh_short_C2 PF13561.1 241 3.6e-14 45.3 0.0 1 1 6.6e-16 4e-14 45.1 0.0 34 176 3 142 1 153 0.91 # 17772 # 18245 # 1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 5_2 - 252 SbcCD_C PF13558.1 90 0.00013 14.1 0.4 1 1 0.00012 0.0035 9.5 0.0 30 86 133 176 125 180 0.75 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_1 - 561 SbcCD_C PF13558.1 90 0.0039 9.4 4.3 1 1 0.00013 0.004 9.3 0.7 22 83 446 494 431 500 0.71 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_1 - 561 Viral_helicase1 PF01443.13 234 0.0004 12.1 0.0 1 2 3.8e-05 0.0023 9.6 0.0 2 21 350 369 349 379 0.85 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_1 - 561 Viral_helicase1 PF01443.13 234 0.0004 12.1 0.0 2 2 0.063 3.9 -0.9 0.0 59 74 473 486 463 502 0.80 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_3 - 442 NAD_binding_9 PF13454.1 156 5.7e-07 21.6 0.1 1 3 2.4e-07 1.4e-05 17.1 0.0 5 119 11 125 8 152 0.67 # 3375 # 4700 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 1_3 - 442 NAD_binding_9 PF13454.1 156 5.7e-07 21.6 0.1 2 3 0.096 5.9 -1.2 0.0 2 20 194 212 193 229 0.82 # 3375 # 4700 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 1_3 - 442 NAD_binding_9 PF13454.1 156 5.7e-07 21.6 0.1 3 3 0.025 1.5 0.7 0.0 120 155 307 345 300 346 0.60 # 3375 # 4700 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 4_2 - 537 PduV-EutP PF10662.4 143 0.00016 13.4 0.0 1 1 7e-06 0.00043 12.0 0.0 6 35 358 387 355 394 0.89 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 3_10 - 265 ParA PF10609.4 81 4.5e-05 15.6 0.2 1 1 4.1e-06 0.00013 14.1 0.0 2 52 125 173 124 190 0.80 # 8253 # 9047 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_7 - 323 ParA PF10609.4 81 9.3e-05 14.5 0.0 1 1 6.9e-06 0.00021 13.4 0.0 24 63 45 83 31 98 0.82 # 11068 # 12036 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_6 - 727 Plug PF07715.10 108 1.1e-15 50.1 0.2 1 1 6.8e-17 4.1e-15 48.3 0.1 5 102 83 174 80 182 0.92 # 8784 # 10964 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 4_1 - 561 NACHT PF05729.7 166 0.00059 11.7 1.4 1 2 3.9e-05 0.0024 9.8 0.1 3 18 349 364 347 368 0.89 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 4_1 - 561 NACHT PF05729.7 166 0.00059 11.7 1.4 2 2 0.063 3.9 -0.7 0.0 109 156 495 541 409 546 0.57 # 232 # 1914 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 3_1 - 305 AAA_25 PF13481.1 194 2.5e-23 74.7 0.0 1 1 1.5e-24 3.1e-23 74.3 0.0 17 192 13 190 1 192 0.82 # 200 # 1114 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.417 4_2 - 537 AAA_25 PF13481.1 194 5.4e-06 18.1 0.1 1 1 1.1e-06 2.2e-05 16.1 0.1 29 91 349 422 341 514 0.69 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 5_2 - 252 AAA_25 PF13481.1 194 8e-06 17.6 0.1 1 2 4.1e-06 8.4e-05 14.2 0.0 31 59 25 55 21 83 0.79 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 5_2 - 252 AAA_25 PF13481.1 194 8e-06 17.6 0.1 2 2 0.047 0.96 1.0 0.0 167 188 173 194 153 196 0.85 # 927 # 1682 # 1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=3bp;gc_cont=0.366 4_2 - 537 AAA_28 PF13521.1 163 6.8e-05 15.1 0.0 1 1 1.9e-06 0.00011 14.3 0.0 3 112 357 465 355 518 0.59 # 1911 # 3521 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.418 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bc2340fb-ef03-49d1-8152-8166f2b88807 # Target file: checkm_output/bins/pGCA_002291265.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002291265.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bc2340fb-ef03-49d1-8152-8166f2b88807 checkm_output/bins/pGCA_002291265.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:44 2020 # [ok]