# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_108 - 96 OmdA PF13376.1 63 0.00062 12.9 0.1 1 1 6.3e-06 0.00095 12.4 0.1 3 35 28 60 26 64 0.88 # 98291 # 98578 # 1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.743 1_29 - 521 cobW PF02492.14 178 0.00012 15.0 0.0 1 1 1.5e-06 0.00023 14.1 0.0 3 36 269 302 267 309 0.80 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 IstB_IS21 PF01695.12 178 0.00059 12.8 0.0 1 1 7.4e-06 0.0011 11.9 0.0 44 71 263 290 255 305 0.87 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_126 - 303 MipZ PF09140.6 261 1.9e-07 23.9 0.1 1 2 5.6e-08 8.5e-06 18.5 0.0 2 72 19 88 18 108 0.84 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_126 - 303 MipZ PF09140.6 261 1.9e-07 23.9 0.1 2 2 0.0021 0.32 3.4 0.0 73 154 127 215 117 227 0.69 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_126 - 303 YhjQ PF06564.7 244 7.8e-05 15.6 0.0 1 2 2.9e-06 0.00045 13.1 0.0 11 41 27 57 20 64 0.92 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_126 - 303 YhjQ PF06564.7 244 7.8e-05 15.6 0.0 2 2 0.028 4.2 0.1 0.0 104 142 141 179 93 205 0.79 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_29 - 521 AAA_22 PF13401.1 131 7.1e-05 16.5 0.0 1 1 3.7e-06 0.00019 15.1 0.0 4 54 266 319 263 360 0.69 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_9 - 374 AAA_22 PF13401.1 131 0.00016 15.4 0.0 1 1 7.9e-06 0.0004 14.1 0.0 14 120 115 237 113 243 0.83 # 7801 # 8922 # -1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.709 1_59 - 315 AAA_22 PF13401.1 131 0.00077 13.1 0.1 1 1 3.6e-05 0.0018 11.9 0.0 79 101 152 179 78 208 0.70 # 53325 # 54269 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.706 1_110 - 132 YjeF_N PF03853.10 169 0.00037 13.6 0.4 1 1 3.3e-06 0.0005 13.2 0.4 22 60 78 116 56 127 0.70 # 99292 # 99687 # 1 # ID=1_110;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.755 1_110 - 132 ATP_bind_2 PF03668.10 284 1.9e-19 63.2 0.0 1 1 1.4e-21 2.2e-19 63.1 0.0 163 283 2 122 1 123 0.92 # 99292 # 99687 # 1 # ID=1_110;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.755 1_107 - 278 AAA_17 PF13207.1 121 0.00012 16.4 0.1 1 1 7.2e-06 0.00054 14.3 0.1 2 103 133 234 132 248 0.50 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_29 - 521 AAA_17 PF13207.1 121 0.00013 16.3 0.0 1 1 3.7e-06 0.00028 15.2 0.0 2 33 269 305 268 361 0.74 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 Miro PF08477.8 119 0.00023 15.2 0.0 1 1 2.6e-06 0.0004 14.4 0.0 2 22 269 289 268 319 0.79 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 MobB PF03205.9 140 6.5e-05 16.2 0.0 1 1 8.3e-07 0.00013 15.2 0.0 3 32 269 298 267 313 0.78 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_126 - 303 LpxK PF02606.9 326 4.9e-05 15.9 1.0 1 2 2.1e-06 0.00032 13.2 0.1 43 71 24 52 14 53 0.93 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_126 - 303 LpxK PF02606.9 326 4.9e-05 15.9 1.0 2 2 0.012 1.8 0.8 0.1 120 159 128 167 120 171 0.85 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_60 - 877 Helicase_C PF00271.26 78 9.3e-11 35.0 0.0 1 1 2.4e-12 1.8e-10 34.1 0.0 10 76 19 87 16 89 0.95 # 54266 # 56896 # 1 # ID=1_60;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.705 1_55 - 763 Helicase_C PF00271.26 78 1.5e-08 28.0 0.0 1 1 4.6e-10 3.5e-08 26.8 0.0 8 77 326 396 322 397 0.93 # 48970 # 51258 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.706 1_126 - 303 ArsA_ATPase PF02374.10 305 1.5e-06 20.9 0.0 1 1 1.8e-08 2.8e-06 20.0 0.0 8 49 25 66 17 81 0.82 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_29 - 521 T2SE PF00437.15 272 4.4e-40 130.7 0.0 1 1 5e-42 7.7e-40 129.9 0.0 5 269 143 426 140 429 0.87 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_28 - 290 AAA_26 PF13500.1 199 0.0011 12.1 0.0 1 1 1.4e-05 0.0022 11.1 0.0 132 195 155 221 153 223 0.87 # 29610 # 30479 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.743 1_107 - 278 Zeta_toxin PF06414.7 201 1.2e-06 21.2 0.1 1 1 5.9e-08 4.5e-06 19.4 0.1 18 146 132 245 129 260 0.87 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_29 - 521 Zeta_toxin PF06414.7 201 0.0002 14.0 0.0 1 1 6e-06 0.00046 12.8 0.0 16 51 266 302 257 304 0.89 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_21 - 449 SMC_N PF02463.14 220 0.00028 13.6 0.0 1 1 2.2e-06 0.00033 13.4 0.0 135 199 183 266 3 281 0.72 # 21491 # 22837 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.559 1_126 - 303 Fer4_NifH PF00142.13 273 0.00021 14.0 0.0 1 1 2.1e-06 0.00032 13.4 0.0 8 68 26 89 18 98 0.78 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_29 - 521 AAA_16 PF13191.1 185 6.9e-07 22.9 0.2 1 1 1.5e-08 2.3e-06 21.2 0.0 22 52 264 294 247 309 0.80 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_8 - 637 AAA_23 PF13476.1 202 3.3e-06 21.0 4.1 1 1 3.5e-06 0.00027 14.8 4.1 12 131 14 190 2 487 0.59 # 5825 # 7735 # 1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.649 1_29 - 521 AAA_23 PF13476.1 202 0.0017 12.2 0.0 1 1 3.5e-05 0.0027 11.5 0.0 22 39 269 286 265 287 0.91 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 AAA_18 PF13238.1 129 1.4e-05 19.0 0.0 1 1 3.8e-07 2.9e-05 17.9 0.0 1 34 269 304 269 326 0.79 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_107 - 278 AAA_18 PF13238.1 129 0.00024 14.9 0.2 1 1 4.6e-05 0.0035 11.2 0.2 1 42 133 171 133 256 0.56 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_21 - 449 AAA_13 PF13166.1 712 1.2e-07 24.0 0.0 1 1 1.2e-09 1.8e-07 23.5 0.0 494 579 193 274 174 290 0.83 # 21491 # 22837 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.559 1_126 - 303 CbiA PF01656.18 195 2.6e-20 66.1 0.0 1 1 2.6e-22 3.9e-20 65.5 0.0 3 116 22 176 20 180 0.78 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_29 - 521 AAA_29 PF13555.1 62 4.2e-06 19.8 0.0 1 1 1.3e-07 9.7e-06 18.6 0.0 5 43 244 286 243 288 0.76 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 856 AAA_29 PF13555.1 62 0.00027 14.0 0.0 1 1 8.1e-06 0.00061 12.8 0.0 25 49 475 500 464 505 0.74 # 15173 # 17740 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.713 1_30 - 322 KR PF08659.5 181 0.00018 14.7 4.3 1 2 0.011 1.6 1.8 0.5 3 95 63 161 62 165 0.60 # 32031 # 32996 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.735 1_30 - 322 KR PF08659.5 181 0.00018 14.7 4.3 2 2 1.6e-06 0.00025 14.2 0.2 16 91 171 245 167 268 0.87 # 32031 # 32996 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.735 1_64 - 398 PCMT PF01135.14 210 2e-10 34.0 0.0 1 1 2.1e-12 3.1e-10 33.4 0.0 57 184 90 216 55 230 0.82 # 59165 # 60358 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.777 1_29 - 521 MMR_HSR1 PF01926.18 116 0.0011 12.5 0.0 1 1 1.4e-05 0.0021 11.6 0.0 2 56 269 311 268 362 0.79 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_9 - 374 TniB PF05621.6 302 0.0001 14.6 0.0 1 1 1.3e-06 0.0002 13.6 0.0 214 284 286 356 129 370 0.63 # 7801 # 8922 # -1 # ID=2_9;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.709 1_126 - 303 AAA_31 PF13614.1 157 3.4e-05 17.3 0.0 1 1 1.3e-06 9.9e-05 15.8 0.0 10 85 27 102 25 113 0.75 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 1_28 - 290 AAA_31 PF13614.1 157 0.00031 14.2 0.0 1 1 8.3e-06 0.00063 13.2 0.0 10 154 10 165 3 167 0.75 # 29610 # 30479 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.743 1_107 - 278 AAA_33 PF13671.1 143 2.6e-23 76.0 0.2 1 1 6.8e-25 5.1e-23 75.0 0.2 1 135 132 252 132 259 0.88 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_29 - 521 AAA_33 PF13671.1 143 0.00043 13.7 0.0 1 1 1.4e-05 0.0011 12.4 0.0 2 33 269 304 269 358 0.76 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_107 - 278 KTI12 PF08433.5 270 9.7e-07 21.7 0.0 1 1 3.1e-08 4.8e-06 19.4 0.0 3 129 132 249 131 257 0.80 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_64 - 398 Methyltransf_26 PF13659.1 117 0.0021 11.6 2.2 1 1 5.5e-05 0.0084 9.7 2.1 9 75 115 179 112 230 0.88 # 59165 # 60358 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.777 1_29 - 521 FtsK_SpoIIIE PF01580.13 205 0.00023 14.1 0.0 1 1 5.8e-06 0.00044 13.2 0.0 39 58 265 286 234 293 0.82 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_102 - 713 FtsK_SpoIIIE PF01580.13 205 0.001 12.0 0.0 1 1 2.8e-05 0.0021 11.0 0.0 29 54 366 393 352 404 0.84 # 92191 # 94329 # 1 # ID=1_102;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.727 1_37 - 342 Mg_chelatase_2 PF13335.1 96 0.0013 12.6 1.8 1 3 0.0067 1 3.4 0.0 72 90 10 28 5 34 0.83 # 39052 # 40077 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.731 1_37 - 342 Mg_chelatase_2 PF13335.1 96 0.0013 12.6 1.8 2 3 0.039 5.9 0.9 0.1 22 65 87 131 76 132 0.80 # 39052 # 40077 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.731 1_37 - 342 Mg_chelatase_2 PF13335.1 96 0.0013 12.6 1.8 3 3 0.0016 0.25 5.3 0.0 75 95 195 215 187 216 0.92 # 39052 # 40077 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.731 1_29 - 521 Dynamin_N PF00350.18 168 0.0011 12.2 0.0 1 1 1.8e-05 0.0027 11.0 0.0 1 22 269 289 269 300 0.80 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_107 - 278 6PF2K PF01591.13 223 0.0005 12.7 0.0 1 2 0.00064 0.097 5.2 0.0 15 31 132 148 129 160 0.87 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_107 - 278 6PF2K PF01591.13 223 0.0005 12.7 0.0 2 2 0.00056 0.085 5.4 0.0 81 123 177 219 166 238 0.80 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_29 - 521 ABC_tran PF00005.22 137 1.6e-05 18.7 0.0 1 1 2e-07 3.1e-05 17.8 0.0 6 45 261 300 257 316 0.85 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 856 AAA_10 PF12846.2 304 6.6e-36 117.7 0.0 1 1 1.8e-37 9.1e-36 117.3 0.0 2 302 474 784 473 786 0.92 # 15173 # 17740 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.713 1_23 - 734 AAA_10 PF12846.2 304 8.8e-11 35.2 0.0 1 1 2.4e-12 1.2e-10 34.7 0.0 7 298 294 621 291 628 0.79 # 24073 # 26274 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.715 1_29 - 521 AAA_10 PF12846.2 304 0.00015 14.7 0.0 1 1 8e-06 0.0004 13.3 0.0 2 21 267 286 266 297 0.89 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_59 - 315 ResIII PF04851.10 184 2.3e-18 60.1 0.0 1 1 7e-20 5.3e-18 59.0 0.0 3 183 19 204 17 205 0.68 # 53325 # 54269 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.706 1_55 - 763 ResIII PF04851.10 184 2.1e-17 57.0 0.0 1 1 1.2e-18 9.4e-17 54.9 0.0 4 183 15 199 13 200 0.81 # 48970 # 51258 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.706 1_55 - 763 DUF2075 PF09848.4 352 0.00026 13.5 0.0 1 1 7.5e-06 0.00057 12.4 0.0 11 103 43 177 41 190 0.80 # 48970 # 51258 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.706 1_59 - 315 DUF2075 PF09848.4 352 0.0021 10.5 0.1 1 1 6.5e-05 0.0049 9.3 0.0 80 97 159 176 119 192 0.84 # 53325 # 54269 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.706 1_29 - 521 PduV-EutP PF10662.4 143 8e-05 15.6 0.0 1 1 9.5e-07 0.00014 14.8 0.0 2 46 267 312 266 313 0.85 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_55 - 763 DEAD PF00270.24 169 2.7e-12 40.0 0.0 1 1 1.9e-13 1.4e-11 37.6 0.0 2 163 17 199 16 203 0.61 # 48970 # 51258 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.706 1_59 - 315 DEAD PF00270.24 169 1.4e-11 37.7 0.0 1 1 3.8e-13 2.9e-11 36.6 0.0 2 167 22 209 21 211 0.72 # 53325 # 54269 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.706 1_107 - 278 CPT PF07931.7 174 0.0022 11.1 0.8 1 3 0.05 7.5 -0.4 0.0 121 140 102 121 90 125 0.85 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_107 - 278 CPT PF07931.7 174 0.0022 11.1 0.8 2 3 0.00099 0.15 5.1 0.0 1 23 130 152 130 160 0.85 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_107 - 278 CPT PF07931.7 174 0.0022 11.1 0.8 3 3 0.0057 0.87 2.7 0.1 75 135 185 246 163 258 0.72 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_29 - 521 GTP_EFTU PF00009.22 188 0.00078 12.4 0.0 1 1 8e-06 0.0012 11.8 0.0 3 25 266 288 264 310 0.84 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 UPF0079 PF02367.12 123 5.6e-05 16.3 0.0 1 1 6.8e-07 0.0001 15.4 0.0 10 41 261 292 253 299 0.76 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 AAA_24 PF13479.1 213 0.00047 13.3 0.1 1 2 0.00036 0.055 6.5 0.0 98 134 239 273 231 275 0.80 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 AAA_24 PF13479.1 213 0.00047 13.3 0.1 2 2 4e-05 0.0061 9.6 0.1 5 25 268 288 265 294 0.87 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_29 - 521 NACHT PF05729.7 166 5.8e-05 16.3 0.0 1 1 8.1e-07 0.00012 15.2 0.0 1 24 267 290 267 296 0.86 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_107 - 278 AAA_25 PF13481.1 194 6.6e-06 19.1 0.8 1 2 1e-06 0.00015 14.7 0.1 21 50 119 147 100 149 0.76 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_107 - 278 AAA_25 PF13481.1 194 6.6e-06 19.1 0.8 2 2 0.0053 0.8 2.5 0.0 141 171 151 182 146 202 0.75 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_59 - 315 SNF2_N PF00176.18 299 8.2e-08 24.8 0.0 1 1 5.7e-10 8.6e-08 24.7 0.0 127 203 154 238 23 264 0.80 # 53325 # 54269 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.706 1_29 - 521 AAA_28 PF13521.1 163 0.00042 13.8 0.0 1 1 1.7e-05 0.0013 12.2 0.0 2 44 269 315 268 357 0.77 # 30472 # 32034 # 1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_107 - 278 AAA_28 PF13521.1 163 0.00077 12.9 0.7 1 1 3e-05 0.0023 11.4 0.1 2 66 133 192 132 210 0.72 # 97461 # 98294 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.733 1_126 - 303 AAA_5 PF07728.9 139 0.0012 12.1 0.0 1 1 1.3e-05 0.002 11.4 0.0 9 64 28 85 26 92 0.89 # 106909 # 107817 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.645 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b8a9316e-13c8-4c01-b75e-a47390f80496 # Target file: checkm_output/bins/pGCA_002288075.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002288075.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b8a9316e-13c8-4c01-b75e-a47390f80496 checkm_output/bins/pGCA_002288075.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:38 2020 # [ok]