# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 178 UPF0020 PF01170.13 180 3.5e-08 24.1 0.0 1 1 2.3e-09 5.6e-08 23.4 0.0 27 120 45 150 42 162 0.72 # 6221 # 6754 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.483 1_7 - 534 Helicase_C PF00271.26 78 6.5e-07 20.1 0.1 1 1 9.6e-08 2.3e-06 18.4 0.0 24 76 408 461 391 463 0.89 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_10 - 178 N6_Mtase PF02384.11 311 2.2e-36 116.3 0.0 1 1 2e-37 2.4e-36 116.2 0.0 9 169 1 175 1 177 0.89 # 6221 # 6754 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.483 1_11 - 65 N6_Mtase PF02384.11 311 4.4e-21 66.0 0.0 1 1 4.1e-22 4.9e-21 65.9 0.0 173 229 2 58 1 63 0.96 # 6754 # 6948 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 1_10 - 178 Methyltransf_26 PF13659.1 117 4.1e-13 40.3 0.0 1 1 2.4e-14 5.7e-13 39.9 0.0 1 84 47 150 47 172 0.83 # 6221 # 6754 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.483 1_7 - 534 AAA_30 PF13604.1 196 0.00024 11.6 0.0 1 1 2e-05 0.00049 10.6 0.0 2 101 69 208 68 211 0.85 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_11 - 65 Eco57I PF07669.6 106 2.8e-05 15.4 0.0 1 1 1.2e-06 2.8e-05 15.4 0.0 46 103 7 62 1 64 0.89 # 6754 # 6948 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 1_7 - 534 AAA_19 PF13245.1 76 5.8e-06 17.0 0.0 1 2 6.1e-06 0.00015 12.5 0.0 16 48 94 124 80 153 0.78 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_7 - 534 AAA_19 PF13245.1 76 5.8e-06 17.0 0.0 2 2 0.013 0.32 1.8 0.0 42 63 360 384 342 398 0.74 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_17 - 193 adh_short_C2 PF13561.1 241 2.8e-07 21.4 0.2 1 1 1.7e-08 4e-07 20.9 0.2 13 92 54 147 52 164 0.76 # 11838 # 12416 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_7 - 534 ResIII PF04851.10 184 3e-34 109.3 0.0 1 1 2.3e-35 5.5e-34 108.4 0.0 1 183 66 255 66 256 0.89 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_10 - 178 FtsJ PF01728.14 181 0.00012 13.0 0.0 1 1 5.5e-06 0.00013 12.9 0.0 21 64 44 87 13 142 0.78 # 6221 # 6754 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.483 1_7 - 534 DEAD PF00270.24 169 7.1e-11 32.7 0.0 1 2 2.7e-11 6.5e-10 29.6 0.0 10 165 83 258 70 262 0.63 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_7 - 534 DEAD PF00270.24 169 7.1e-11 32.7 0.0 2 2 0.031 0.74 0.2 0.0 52 92 447 486 352 515 0.70 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_10 - 178 AlaDh_PNT_C PF01262.16 168 5e-05 13.8 0.0 1 1 3.1e-06 7.3e-05 13.3 0.0 117 149 22 64 20 84 0.85 # 6221 # 6754 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.483 1_7 - 534 UvrD-helicase PF00580.16 315 1.2e-05 15.6 0.1 1 2 1.7e-06 4.1e-05 13.8 0.1 6 46 81 119 78 125 0.87 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 1_7 - 534 UvrD-helicase PF00580.16 315 1.2e-05 15.6 0.1 2 2 0.092 2.2 -1.7 0.0 169 201 350 382 254 424 0.58 # 3447 # 5048 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.453 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c2976d09-88eb-4466-8a7f-e2af3edc3423 # Target file: checkm_output/bins/pGCA_002287545.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002287545.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c2976d09-88eb-4466-8a7f-e2af3edc3423 checkm_output/bins/pGCA_002287545.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:35 2020 # [ok]