# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 608 cobW PF02492.14 178 0.00049 12.4 0.1 1 1 9.8e-06 0.00093 11.5 0.1 3 25 229 250 227 260 0.82 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 2_13 - 214 Seryl_tRNA_N PF02403.17 108 0.0019 11.1 14.9 1 2 1.9e-05 0.0018 11.2 9.5 21 93 86 161 72 172 0.83 # 13184 # 13825 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 2_13 - 214 Seryl_tRNA_N PF02403.17 108 0.0019 11.1 14.9 2 2 0.013 1.3 2.0 2.7 58 96 161 203 151 208 0.41 # 13184 # 13825 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_21 - 335 IstB_IS21 PF01695.12 178 0.00078 11.7 0.0 1 1 1.2e-05 0.0012 11.1 0.0 4 70 115 188 112 209 0.69 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 957 UvrD_C_2 PF13538.1 104 2.8e-13 42.8 0.1 1 1 1.6e-14 1.5e-12 40.4 0.1 3 103 806 905 804 906 0.82 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_16 - 516 DUF87 PF01935.12 229 8.2e-12 38.2 0.0 1 1 2.9e-13 1.4e-11 37.5 0.0 11 75 116 176 102 226 0.85 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_21 - 335 DUF87 PF01935.12 229 2.7e-06 20.1 0.0 1 1 1e-07 4.7e-06 19.3 0.0 24 48 166 190 158 203 0.82 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 335 AAA_22 PF13401.1 131 7.3e-05 15.8 0.0 1 1 2.7e-06 0.00013 15.0 0.0 3 30 164 191 161 235 0.85 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_29 - 608 AAA_22 PF13401.1 131 0.0011 12.0 0.2 1 1 0.00012 0.0058 9.6 0.0 4 28 226 250 223 278 0.88 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_40 - 122 N6_N4_Mtase PF01555.13 231 3.1e-17 55.6 0.0 1 1 4e-19 3.8e-17 55.3 0.0 1 62 45 106 45 114 0.96 # 28351 # 28716 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_17 - 957 AAA_17 PF13207.1 121 4.4e-05 17.2 0.3 1 2 0.039 1.8 2.2 0.2 12 97 199 295 199 342 0.55 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 AAA_17 PF13207.1 121 4.4e-05 17.2 0.3 2 2 4.5e-05 0.0021 11.7 0.0 2 64 505 570 504 631 0.74 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_21 - 335 AAA_17 PF13207.1 121 0.00012 15.7 0.0 1 1 1e-05 0.00048 13.8 0.0 2 19 168 185 167 214 0.88 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 335 MobB PF03205.9 140 0.00083 11.9 0.0 1 1 2e-05 0.0019 10.8 0.0 3 32 168 196 166 207 0.77 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 957 PhoH PF02562.11 205 1.5e-09 30.2 0.5 1 2 6.9e-07 6.6e-05 15.0 0.1 5 45 486 527 484 546 0.79 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 PhoH PF02562.11 205 1.5e-09 30.2 0.5 2 2 3e-06 0.00028 13.0 0.0 119 161 569 612 541 638 0.85 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_21 - 335 T2SE PF00437.15 272 4.8e-50 162.7 0.0 1 1 1.2e-51 5.7e-50 162.5 0.0 3 270 16 315 14 317 0.94 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_29 - 608 T2SE PF00437.15 272 0.00022 13.0 0.0 1 1 9.8e-06 0.00046 11.9 0.0 130 156 228 254 221 261 0.85 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_29 - 608 SMC_N PF02463.14 220 4e-05 15.7 0.0 1 2 1.5e-05 0.0014 10.7 0.0 18 48 220 247 211 257 0.82 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_29 - 608 SMC_N PF02463.14 220 4e-05 15.7 0.0 2 2 0.0051 0.48 2.4 0.0 158 188 439 470 434 498 0.74 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_29 - 608 AAA_16 PF13191.1 185 4.4e-06 19.6 0.1 1 1 7e-07 2.2e-05 17.3 0.0 22 51 224 253 218 265 0.85 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_17 - 957 AAA_16 PF13191.1 185 1.8e-05 17.6 1.8 1 1 1.2e-06 3.7e-05 16.6 0.1 20 131 498 599 487 665 0.70 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_21 - 335 AAA_16 PF13191.1 185 5.2e-05 16.1 0.2 1 1 3.7e-06 0.00012 15.0 0.2 16 51 158 192 142 211 0.79 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_16 - 516 AAA_23 PF13476.1 202 7.1e-05 16.0 0.0 1 1 2.3e-06 0.00011 15.4 0.0 22 49 128 155 119 238 0.84 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_29 - 608 AAA_23 PF13476.1 202 0.0002 14.6 0.0 1 1 8e-06 0.00038 13.6 0.0 19 40 226 247 207 258 0.85 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_21 - 335 AAA_18 PF13238.1 129 0.0001 15.4 0.0 1 1 3.9e-06 0.00018 14.6 0.0 1 21 168 193 168 229 0.75 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 957 AAA_18 PF13238.1 129 0.0003 14.0 0.3 1 1 9e-05 0.0043 10.2 0.0 1 33 505 540 505 581 0.72 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 2_13 - 214 AAA_13 PF13166.1 712 1.2e-05 16.8 4.7 1 1 2.7e-07 1.3e-05 16.6 4.7 332 471 37 200 7 206 0.77 # 13184 # 13825 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.606 1_12 - 127 AAA_13 PF13166.1 712 0.00089 10.5 0.1 1 1 2.2e-05 0.0011 10.3 0.1 269 333 24 86 22 102 0.75 # 6053 # 6433 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.646 1_13 - 232 CbiA PF01656.18 195 1e-06 21.1 2.7 1 2 1.2e-05 0.00058 12.1 0.2 1 20 3 22 3 24 0.94 # 6448 # 7143 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_13 - 232 CbiA PF01656.18 195 1e-06 21.1 2.7 2 2 0.0001 0.0048 9.1 0.2 115 161 89 135 27 159 0.79 # 6448 # 7143 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_16 - 516 CbiA PF01656.18 195 4.6e-05 15.7 0.0 1 1 1.5e-06 7.1e-05 15.1 0.0 4 46 130 172 128 268 0.81 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_21 - 335 IIGP PF05049.8 376 0.00051 11.7 0.0 1 1 7.8e-06 0.00074 11.2 0.0 33 55 163 185 139 194 0.86 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_3 - 271 Methyltransf_25 PF13649.1 101 3.1e-06 20.4 0.0 1 1 6.3e-08 6e-06 19.5 0.0 2 76 136 215 135 243 0.77 # 2493 # 3305 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_16 - 516 AAA_14 PF13173.1 128 6e-05 15.8 0.0 1 2 5.3e-05 0.005 9.6 0.0 6 85 129 209 124 217 0.73 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_16 - 516 AAA_14 PF13173.1 128 6e-05 15.8 0.0 2 2 0.0039 0.37 3.6 0.0 61 100 350 389 309 403 0.76 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_12 - 127 Ribosomal_S20p PF01649.13 84 0.00019 14.6 0.8 1 1 3.8e-06 0.00036 13.8 0.2 37 81 25 68 18 71 0.84 # 6053 # 6433 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.646 1_29 - 608 AAA_29 PF13555.1 62 6.7e-07 21.7 0.2 1 1 4.6e-08 1.5e-06 20.6 0.2 23 45 227 248 217 251 0.88 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_21 - 335 AAA_29 PF13555.1 62 2.8e-05 16.5 0.0 1 1 2e-06 6.4e-05 15.3 0.0 21 39 164 181 154 193 0.80 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_16 - 516 AAA_29 PF13555.1 62 0.00041 12.8 0.0 1 1 3.6e-05 0.0012 11.3 0.0 17 40 119 142 113 154 0.82 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_17 - 957 AAA PF00004.24 132 7.6e-05 15.8 0.1 1 1 2.3e-06 0.00021 14.3 0.1 4 74 508 584 505 627 0.73 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_21 - 335 Sigma54_activat PF00158.21 168 0.00074 11.8 0.0 1 2 2.3e-05 0.0021 10.3 0.0 15 54 158 197 148 223 0.78 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 335 Sigma54_activat PF00158.21 168 0.00074 11.8 0.0 2 2 0.039 3.7 -0.2 0.0 92 121 191 220 187 236 0.76 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 335 MMR_HSR1 PF01926.18 116 0.00082 12.2 0.0 1 1 1.7e-05 0.0016 11.2 0.0 2 34 168 205 167 325 0.80 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_3 - 271 N6_Mtase PF02384.11 311 4.8e-08 25.2 0.0 1 1 6.8e-10 6.4e-08 24.8 0.0 23 115 97 200 82 213 0.79 # 2493 # 3305 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_16 - 516 TraG-D_C PF12696.2 128 5.2e-27 87.1 0.0 1 1 8.6e-29 8.2e-27 86.5 0.0 2 128 352 475 351 475 0.87 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_21 - 335 AAA_33 PF13671.1 143 0.00062 12.5 0.0 1 1 9.9e-06 0.00094 11.9 0.0 3 28 169 197 168 287 0.80 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_3 - 271 Methyltransf_26 PF13659.1 117 4.6e-08 26.0 0.6 1 1 1.8e-09 8.6e-08 25.1 0.6 5 64 136 202 133 253 0.84 # 2493 # 3305 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_40 - 122 Methyltransf_26 PF13659.1 117 3.6e-06 19.9 0.0 1 1 9.5e-08 4.5e-06 19.6 0.0 54 113 28 98 17 102 0.72 # 28351 # 28716 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_17 - 957 AAA_30 PF13604.1 196 5.5e-54 175.5 6.2 1 1 5.8e-56 5.5e-54 175.5 6.2 2 184 486 660 485 666 0.97 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_21 - 335 FtsK_SpoIIIE PF01580.13 205 1.6e-07 23.8 0.0 1 1 8.7e-09 2.8e-07 23.0 0.0 34 64 161 191 145 213 0.83 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_16 - 516 FtsK_SpoIIIE PF01580.13 205 3.5e-05 16.1 0.0 1 1 2.5e-06 7.8e-05 15.0 0.0 39 79 120 162 97 173 0.79 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_29 - 608 FtsK_SpoIIIE PF01580.13 205 0.00015 14.1 0.0 1 1 1e-05 0.00032 13.0 0.0 39 62 225 250 182 258 0.80 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_33 - 97 CoA_binding_3 PF13727.1 175 0.00085 12.0 2.5 1 1 1e-05 0.00098 11.8 2.5 43 88 38 80 4 89 0.55 # 24659 # 24949 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.536 1_21 - 335 ABC_tran PF00005.22 137 1.2e-06 21.7 0.0 1 1 2e-08 1.9e-06 21.0 0.0 6 64 160 215 156 265 0.82 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 957 AAA_19 PF13245.1 76 1.9e-08 26.9 0.0 1 2 1.5e-08 7.2e-07 21.8 0.0 2 76 493 560 492 560 0.83 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 AAA_19 PF13245.1 76 1.9e-08 26.9 0.0 2 2 0.044 2.1 1.1 0.0 30 60 676 707 674 723 0.85 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_29 - 608 AAA_19 PF13245.1 76 0.00052 12.6 0.1 1 2 0.00021 0.0099 8.5 0.1 13 30 229 245 221 258 0.76 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_29 - 608 AAA_19 PF13245.1 76 0.00052 12.6 0.1 2 2 0.061 2.9 0.6 0.0 41 62 555 577 546 591 0.78 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_17 - 957 Helicase_RecD PF05127.9 177 0.00023 13.6 0.8 1 2 0.0019 0.18 4.2 0.1 123 145 507 529 490 555 0.75 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 Helicase_RecD PF05127.9 177 0.00023 13.6 0.8 2 2 0.00033 0.032 6.7 0.1 82 113 563 592 539 602 0.72 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_29 - 608 AAA_10 PF12846.2 304 5.8e-30 97.5 0.0 1 2 0.021 0.66 2.1 0.0 50 106 28 91 17 158 0.79 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_29 - 608 AAA_10 PF12846.2 304 5.8e-30 97.5 0.0 2 2 3.2e-30 1e-28 93.4 0.0 2 303 227 522 226 523 0.87 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_16 - 516 AAA_10 PF12846.2 304 5.7e-11 35.1 0.1 1 1 2.1e-10 6.6e-09 28.4 0.1 1 293 125 422 125 435 0.62 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_21 - 335 AAA_10 PF12846.2 304 1.6e-05 17.2 0.0 1 1 8e-07 2.5e-05 16.6 0.0 2 26 166 190 165 218 0.84 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_3 - 271 Methyltransf_31 PF13847.1 152 0.00028 13.3 0.0 1 1 5.5e-06 0.00052 12.5 0.0 6 53 134 188 130 206 0.70 # 2493 # 3305 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_17 - 957 Viral_helicase1 PF01443.13 234 4.1e-13 42.2 0.2 1 2 1.2e-07 1.2e-05 17.8 0.0 3 115 507 622 505 688 0.73 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 Viral_helicase1 PF01443.13 234 4.1e-13 42.2 0.2 2 2 8.1e-09 7.7e-07 21.6 0.1 138 234 820 907 786 907 0.76 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_21 - 335 DEAD PF00270.24 169 3.3e-05 16.2 0.0 1 1 2.6e-06 0.00025 13.4 0.0 13 71 164 222 155 328 0.73 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_16 - 516 DUF853 PF05872.7 504 0.00025 12.3 0.0 1 1 4e-06 0.00038 11.6 0.0 15 69 119 174 107 189 0.87 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_16 - 516 TrwB_AAD_bind PF10412.4 386 9.2e-130 425.4 0.0 1 1 3.4e-131 1.1e-129 425.2 0.0 1 384 111 492 111 494 0.98 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_29 - 608 TrwB_AAD_bind PF10412.4 386 1e-05 17.1 0.0 1 1 9e-07 2.9e-05 15.6 0.0 17 56 228 267 221 272 0.89 # 20537 # 22360 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_21 - 335 TrwB_AAD_bind PF10412.4 386 0.00043 11.7 0.0 1 1 2.4e-05 0.00077 10.9 0.0 14 43 164 193 160 202 0.85 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 957 AAA_11 PF13086.1 236 1.8e-05 17.2 3.7 1 3 0.057 5.4 -0.7 0.4 106 166 222 282 117 291 0.61 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 AAA_11 PF13086.1 236 1.8e-05 17.2 3.7 2 3 5.9e-06 0.00056 12.3 0.0 2 34 486 519 485 545 0.86 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 AAA_11 PF13086.1 236 1.8e-05 17.2 3.7 3 3 0.0021 0.2 4.0 0.1 171 228 549 608 519 613 0.71 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_16 - 516 T4SS-DNA_transf PF02534.9 469 5.9e-21 67.3 0.0 1 2 3e-06 0.00029 12.3 0.0 44 166 125 237 94 294 0.72 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_16 - 516 T4SS-DNA_transf PF02534.9 469 5.9e-21 67.3 0.0 2 2 1.3e-18 1.2e-16 53.1 0.0 301 440 350 489 300 498 0.83 # 8322 # 9869 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_17 - 957 PIF1 PF05970.9 364 1e-07 24.0 0.1 1 2 4.2e-09 4e-07 22.1 0.0 2 61 486 541 485 583 0.87 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_17 - 957 PIF1 PF05970.9 364 1e-07 24.0 0.1 2 2 0.067 6.3 -1.6 0.0 334 362 803 830 793 832 0.85 # 9866 # 12736 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_21 - 335 GTP_EFTU PF00009.22 188 0.00062 12.0 0.0 1 1 9.7e-06 0.00092 11.5 0.0 3 29 165 191 163 213 0.81 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_21 - 335 RNA_helicase PF00910.17 107 0.00079 12.5 0.0 1 1 1.8e-05 0.0017 11.4 0.0 1 23 168 190 168 221 0.80 # 14164 # 15168 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/610744f6-8973-4b78-9825-5b74cc62cd9f # Target file: checkm_output/bins/pGCA_002285515.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002285515.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/610744f6-8973-4b78-9825-5b74cc62cd9f checkm_output/bins/pGCA_002285515.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:37 2020 # [ok]