# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_17 - 92 ATP_bind_3 PF01171.15 182 0.0017 12.4 0.0 1 1 5.5e-06 0.0017 12.4 0.0 3 27 23 47 21 87 0.84 # 12070 # 12345 # 1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 2_61 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 1 7 0.00011 0.036 8.7 10.6 41 100 225 287 218 294 0.70 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 2 7 0.0019 0.6 4.7 14.1 18 99 360 443 354 448 0.68 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 3 7 0.0017 0.55 4.8 17.3 26 99 401 474 376 478 0.56 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 4 7 4.3e-05 0.013 10.0 11.1 37 103 477 544 475 546 0.95 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 5 7 4.8e-05 0.015 9.9 14.9 11 104 496 590 494 600 0.84 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 6 7 0.0065 2 3.0 10.3 33 99 557 625 548 632 0.62 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 7 7 0.0059 1.8 3.1 2.6 43 84 600 642 596 646 0.72 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_24 - 273 FeoB_N PF02421.13 156 0.0023 11.7 1.0 1 2 0.0084 2.6 1.8 0.0 6 24 12 30 7 37 0.73 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_24 - 273 FeoB_N PF02421.13 156 0.0023 11.7 1.0 2 2 8.4e-05 0.026 8.3 0.3 77 123 158 209 129 221 0.80 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_66 - 289 MipZ PF09140.6 261 2.5e-14 47.5 0.1 1 2 2.7e-11 4.2e-09 30.3 0.1 3 56 9 62 7 86 0.90 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_66 - 289 MipZ PF09140.6 261 2.5e-14 47.5 0.1 2 2 1.2e-06 0.00018 15.1 0.0 76 125 120 169 88 179 0.82 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_24 - 273 MipZ PF09140.6 261 0.00063 13.4 0.0 1 2 2.4e-05 0.0038 10.8 0.0 11 134 16 134 6 142 0.65 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_24 - 273 MipZ PF09140.6 261 0.00063 13.4 0.0 2 2 0.0063 0.99 2.9 0.0 41 129 82 168 62 170 0.62 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_66 - 289 YhjQ PF06564.7 244 1.4e-07 25.7 0.0 1 1 3.2e-09 1e-06 22.8 0.0 10 149 15 174 8 180 0.72 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_67 - 444 3HCDH_N PF02737.13 180 5.3e-05 17.5 0.0 1 2 8.6e-07 0.00027 15.1 0.0 2 49 3 50 2 84 0.75 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_67 - 444 3HCDH_N PF02737.13 180 5.3e-05 17.5 0.0 2 2 0.08 25 -1.0 0.0 14 45 334 370 332 395 0.65 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_25 - 478 AAA_2 PF07724.9 171 0.0013 13.2 1.4 1 2 0.024 7.4 0.9 0.0 4 45 184 225 183 234 0.85 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_25 - 478 AAA_2 PF07724.9 171 0.0013 13.2 1.4 2 2 3.4e-05 0.011 10.2 0.0 2 42 234 276 233 282 0.84 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_45 - 705 DUF87 PF01935.12 229 1.2e-08 29.6 2.2 1 1 9.5e-10 1e-07 26.5 0.1 26 215 287 533 285 550 0.64 # 39509 # 41623 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_25 - 478 DUF87 PF01935.12 229 9.2e-05 16.8 0.5 1 1 2.6e-06 0.00027 15.3 0.1 25 57 237 270 213 274 0.75 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_32 - 645 DUF87 PF01935.12 229 0.0011 13.3 2.0 1 2 0.00034 0.035 8.4 0.1 28 68 252 291 251 320 0.78 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_32 - 645 DUF87 PF01935.12 229 0.0011 13.3 2.0 2 2 0.021 2.2 2.5 0.0 143 220 400 470 338 478 0.84 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 509 NB-ARC PF00931.17 287 0.00013 15.4 3.0 1 2 4.6e-06 0.0015 11.9 0.4 24 76 48 98 38 233 0.85 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 509 NB-ARC PF00931.17 287 0.00013 15.4 3.0 2 2 0.0031 0.96 2.7 0.1 52 96 295 338 281 352 0.79 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 3_69 - 489 AAA_22 PF13401.1 131 8.9e-06 20.4 0.2 1 1 1.2e-05 0.00078 14.1 0.1 4 124 203 305 199 312 0.62 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 509 AAA_22 PF13401.1 131 1.2e-05 20.0 4.4 1 1 6e-05 0.0038 11.9 2.7 8 60 47 94 41 277 0.83 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_25 - 478 AAA_22 PF13401.1 131 2e-05 19.3 0.0 1 1 9.2e-07 5.8e-05 17.8 0.0 3 69 234 325 231 382 0.85 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_48 - 444 AAA_22 PF13401.1 131 0.00021 15.9 0.0 1 1 9.5e-06 0.0006 14.5 0.0 2 28 210 236 209 319 0.75 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_32 - 645 AAA_22 PF13401.1 131 0.0019 12.9 0.4 1 1 0.00015 0.0097 10.6 0.1 6 28 249 271 244 297 0.86 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_66 - 289 ATP_bind_1 PF03029.12 238 2.3e-06 21.8 0.6 1 1 5.8e-08 9.1e-06 19.8 0.6 6 163 17 207 15 251 0.79 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_14 - 379 ATP_bind_1 PF03029.12 238 0.0016 12.5 0.2 1 1 2e-05 0.0031 11.6 0.2 157 237 155 233 129 234 0.83 # 12404 # 13540 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.322 1_8 - 509 Trp_halogenase PF04820.9 454 0.00082 12.5 0.0 1 1 4.1e-06 0.0013 11.9 0.0 88 165 277 355 273 370 0.91 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 3_69 - 489 AAA_3 PF07726.6 131 0.0014 12.7 0.0 1 1 1e-05 0.0031 11.6 0.0 3 91 207 298 205 306 0.78 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_67 - 444 NAD_binding_7 PF13241.1 103 0.003 12.4 1.4 1 2 0.00048 0.15 6.9 0.1 9 90 2 106 1 118 0.62 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_67 - 444 NAD_binding_7 PF13241.1 103 0.003 12.4 1.4 2 2 0.0056 1.8 3.5 0.1 23 74 335 390 335 405 0.70 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_69 - 489 AAA_17 PF13207.1 121 4.3e-05 18.9 0.4 1 1 1.5e-05 0.00067 15.0 0.0 3 40 207 255 206 279 0.72 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_66 - 289 AAA_17 PF13207.1 121 6e-05 18.4 0.0 1 1 2.5e-05 0.0011 14.3 0.0 9 60 17 75 16 198 0.72 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_25 - 478 AAA_17 PF13207.1 121 6.7e-05 18.2 0.3 1 1 5.9e-06 0.00026 16.3 0.0 2 23 238 259 237 409 0.75 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_48 - 444 AAA_17 PF13207.1 121 0.00011 17.6 1.4 1 2 0.051 2.3 3.6 0.8 70 100 35 83 6 185 0.64 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_48 - 444 AAA_17 PF13207.1 121 0.00011 17.6 1.4 2 2 0.0002 0.0092 11.3 0.0 2 34 215 244 214 346 0.66 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_32 - 645 AAA_17 PF13207.1 121 0.00054 15.3 0.3 1 1 4.9e-05 0.0022 13.4 0.0 3 23 251 271 251 335 0.81 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 509 AAA_17 PF13207.1 121 0.0024 13.2 4.5 1 1 6.3e-05 0.0028 13.0 0.2 2 96 46 153 45 174 0.51 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_45 - 705 AAA_17 PF13207.1 121 0.06 8.7 5.6 1 1 0.00057 0.026 9.9 1.4 2 22 287 308 286 594 0.83 # 39509 # 41623 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 1_4 - 198 Adenylsucc_synt PF00709.16 421 0.087 5.9 6.2 1 2 0.00072 0.23 4.5 0.1 285 358 28 99 19 125 0.72 # 3208 # 3801 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.409 1_4 - 198 Adenylsucc_synt PF00709.16 421 0.087 5.9 6.2 2 2 0.0017 0.53 3.3 2.6 154 204 125 175 109 196 0.59 # 3208 # 3801 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.409 1_32 - 645 Miro PF08477.8 119 0.00042 15.3 0.0 1 1 1e-05 0.0016 13.5 0.0 3 62 251 309 250 322 0.76 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 509 Miro PF08477.8 119 0.00068 14.7 0.1 1 1 2e-05 0.0032 12.5 0.0 1 74 45 108 45 117 0.72 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_24 - 273 MobB PF03205.9 140 0.0004 14.6 0.0 1 1 6.1e-06 0.00095 13.4 0.0 8 38 14 44 7 106 0.86 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_66 - 289 MobB PF03205.9 140 0.0021 12.3 0.1 1 1 3.1e-05 0.0048 11.1 0.1 9 46 16 51 8 64 0.88 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 3_6 - 190 AAA_4 PF04326.9 122 1.2e-20 68.4 1.1 1 1 5.5e-23 1.7e-20 67.9 1.1 1 122 31 169 31 169 0.94 # 4264 # 4833 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.309 1_66 - 289 ArsA_ATPase PF02374.10 305 5.9e-08 26.6 0.2 1 1 2.4e-09 3.7e-07 23.9 0.2 8 137 14 153 7 156 0.63 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_24 - 273 ArsA_ATPase PF02374.10 305 0.00073 13.1 0.3 1 1 9.7e-06 0.0015 12.1 0.1 12 38 17 43 9 147 0.76 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 3_69 - 489 PhoH PF02562.11 205 2.4e-07 24.7 0.5 1 2 1e-05 0.0032 11.2 0.0 5 40 187 224 183 238 0.79 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_69 - 489 PhoH PF02562.11 205 2.4e-07 24.7 0.5 2 2 9.2e-06 0.0029 11.4 0.1 117 170 267 322 242 342 0.74 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_25 - 478 MCM PF00493.18 331 7e-05 16.2 0.0 1 1 5.2e-07 0.00016 15.0 0.0 53 84 231 262 221 268 0.90 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_25 - 478 T2SE PF00437.15 272 1.6e-45 149.6 0.0 1 1 3.5e-47 2.7e-45 148.8 0.0 5 270 111 391 108 393 0.91 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_48 - 444 T2SE PF00437.15 272 4.1e-37 122.0 0.0 1 1 8e-39 6.3e-37 121.4 0.0 10 264 95 352 86 360 0.87 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 3_69 - 489 T2SE PF00437.15 272 0.00058 13.3 0.0 1 1 1.4e-05 0.0011 12.4 0.0 107 162 185 236 170 279 0.72 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 509 T2SE PF00437.15 272 0.001 12.5 0.0 1 1 2.4e-05 0.0019 11.6 0.0 121 156 41 71 19 86 0.82 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_16 - 493 AAA_26 PF13500.1 199 0.0014 12.8 0.0 1 2 0.093 29 -1.3 0.0 38 64 124 150 93 191 0.67 # 15223 # 16701 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_16 - 493 AAA_26 PF13500.1 199 0.0014 12.8 0.0 2 2 1.6e-05 0.0049 11.0 0.0 1 34 219 252 219 336 0.86 # 15223 # 16701 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_8 - 509 Zeta_toxin PF06414.7 201 2.9e-05 17.8 0.0 1 1 7e-07 0.00011 15.9 0.0 7 48 34 77 28 90 0.81 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_32 - 645 Zeta_toxin PF06414.7 201 0.0023 11.6 1.6 1 2 0.016 2.5 1.6 0.3 98 133 142 178 95 185 0.83 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_32 - 645 Zeta_toxin PF06414.7 201 0.0023 11.6 1.6 2 2 0.00016 0.025 8.2 0.0 20 56 251 287 242 300 0.84 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 2_67 - 444 NAD_binding_8 PF13450.1 68 0.0009 13.8 0.1 1 1 6.8e-06 0.0021 12.6 0.1 1 27 5 31 5 34 0.94 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_67 - 444 FAD_binding_3 PF01494.14 356 6.5e-05 16.6 0.1 1 1 4.9e-07 0.00016 15.3 0.0 4 40 3 39 1 47 0.91 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_17 - 92 TIGR02432 TIGR02432 189 0.00019 15.6 0.0 1 1 6.6e-07 0.00021 15.5 0.0 3 27 23 47 21 88 0.84 # 12070 # 12345 # 1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_66 - 289 Fer4_NifH PF00142.13 273 1.1e-07 25.8 0.0 1 1 2e-09 3.1e-07 24.3 0.0 7 49 14 56 9 89 0.86 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_24 - 273 Fer4_NifH PF00142.13 273 0.0018 12.0 0.0 1 1 1.7e-05 0.0027 11.4 0.0 2 63 7 70 6 89 0.74 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_8 - 509 Arch_ATPase PF01637.13 234 0.0029 11.8 18.1 1 2 3.8e-05 0.012 9.8 9.7 23 160 46 254 35 257 0.76 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 509 Arch_ATPase PF01637.13 234 0.0029 11.8 18.1 2 2 0.0081 2.6 2.2 0.6 104 141 249 289 245 327 0.78 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 509 AAA_16 PF13191.1 185 2.9e-05 18.6 0.0 1 1 3.5e-06 0.00037 15.0 0.0 25 165 44 230 39 255 0.64 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_48 - 444 AAA_16 PF13191.1 185 0.00012 16.6 0.0 1 1 3e-06 0.00031 15.3 0.0 22 49 210 237 199 267 0.81 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_66 - 289 AAA_16 PF13191.1 185 0.00029 15.4 0.0 1 1 5.8e-06 0.00061 14.3 0.0 34 84 17 81 15 150 0.66 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 3_7 - 275 AAA_23 PF13476.1 202 1.9e-06 22.9 2.1 1 1 2.3e-08 2.4e-06 22.5 2.1 1 77 5 87 5 246 0.61 # 4833 # 5657 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.288 1_48 - 444 AAA_23 PF13476.1 202 0.00037 15.4 0.3 1 1 3.6e-06 0.00037 15.4 0.3 5 37 191 230 188 236 0.89 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_32 - 645 AAA_23 PF13476.1 202 0.0022 12.8 1.6 1 2 0.018 1.9 3.3 0.5 108 165 109 162 17 193 0.49 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_32 - 645 AAA_23 PF13476.1 202 0.0022 12.8 1.6 2 2 0.00077 0.081 7.7 0.0 24 37 252 265 251 370 0.90 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 2_25 - 478 AAA_18 PF13238.1 129 4.4e-05 18.3 0.1 1 1 7.6e-06 0.00034 15.5 0.0 1 36 238 280 238 360 0.67 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_48 - 444 AAA_18 PF13238.1 129 7.9e-05 17.5 2.3 1 1 8.5e-06 0.00038 15.3 0.0 1 68 215 286 215 322 0.64 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_32 - 645 AAA_18 PF13238.1 129 9.2e-05 17.3 2.7 1 1 2.3e-06 0.0001 17.1 0.0 2 40 251 286 251 327 0.73 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 3_69 - 489 AAA_18 PF13238.1 129 0.0011 13.8 1.8 1 1 5.5e-05 0.0025 12.7 0.3 2 67 207 297 207 399 0.74 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_66 - 289 AAA_18 PF13238.1 129 0.0025 12.7 1.2 1 1 0.00028 0.013 10.4 0.2 8 62 17 78 15 159 0.63 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_8 - 509 AAA_18 PF13238.1 129 0.006 11.4 7.7 1 2 0.00077 0.035 9.0 0.0 2 23 47 82 47 153 0.76 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 509 AAA_18 PF13238.1 129 0.006 11.4 7.7 2 2 0.018 0.79 4.6 0.7 22 81 273 339 256 361 0.74 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_45 - 705 AAA_18 PF13238.1 129 0.096 7.5 6.6 1 1 0.0022 0.098 7.5 2.9 1 68 287 374 287 489 0.78 # 39509 # 41623 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_61 - 653 AAA_13 PF13166.1 712 8.5e-05 15.6 88.5 1 3 0.012 3.7 0.3 30.4 307 467 219 384 207 388 0.57 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 AAA_13 PF13166.1 712 8.5e-05 15.6 88.5 2 3 1.6e-06 0.00049 13.1 41.5 276 471 330 520 321 530 0.80 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_61 - 653 AAA_13 PF13166.1 712 8.5e-05 15.6 88.5 3 3 3.1e-06 0.00098 12.1 16.8 291 402 529 643 525 646 0.89 # 56982 # 58940 # 1 # ID=2_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_66 - 289 CbiA PF01656.18 195 6.6e-34 111.5 0.0 1 1 5.2e-36 8.2e-34 111.2 0.0 1 194 9 246 9 247 0.80 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_24 - 273 CbiA PF01656.18 195 1.7e-11 38.4 0.0 1 1 1.6e-13 2.6e-11 37.8 0.0 1 169 8 212 8 227 0.73 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_25 - 478 IIGP PF05049.8 376 0.00012 15.4 0.1 1 2 0.0048 1.5 2.0 0.2 145 249 24 137 7 144 0.67 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_25 - 478 IIGP PF05049.8 376 0.00012 15.4 0.1 2 2 9.2e-06 0.0029 10.9 0.0 22 55 222 255 205 288 0.79 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_34 - 235 Ribosomal_S13 PF00416.17 107 0.0013 13.7 1.0 1 1 6.1e-06 0.0019 13.2 0.2 33 89 62 119 25 124 0.72 # 27498 # 28202 # -1 # ID=3_34;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.295 3_37 - 103 Methyltransf_25 PF13649.1 101 2e-05 19.4 0.0 1 1 7.7e-08 2.4e-05 19.2 0.0 3 44 38 80 36 102 0.82 # 29480 # 29788 # 1 # ID=3_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.395 3_69 - 489 AAA_14 PF13173.1 128 3.9e-07 24.6 3.3 1 1 4.4e-09 6.9e-07 23.7 0.2 4 85 205 295 203 304 0.69 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_32 - 645 AAA_14 PF13173.1 128 2.1e-05 19.0 0.6 1 2 0.00013 0.02 9.3 0.1 7 86 252 357 249 365 0.68 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_32 - 645 AAA_14 PF13173.1 128 2.1e-05 19.0 0.6 2 2 0.00095 0.15 6.5 0.1 28 78 451 525 432 562 0.55 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 509 SRPRB PF09439.5 181 2.4e-05 18.1 0.1 1 1 1.4e-07 4.3e-05 17.3 0.1 4 103 44 138 41 213 0.83 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 3_7 - 275 AAA_29 PF13555.1 62 0.0004 14.4 0.0 1 1 2.2e-06 0.00069 13.7 0.0 2 54 4 55 3 62 0.89 # 4833 # 5657 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.288 3_69 - 489 AAA PF00004.24 132 4.1e-05 18.3 0.0 1 1 6.8e-07 0.00011 17.0 0.0 3 74 208 285 206 298 0.69 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 509 AAA PF00004.24 132 8.8e-05 17.3 7.5 1 2 4.2e-05 0.0066 11.2 0.4 2 31 47 79 46 187 0.72 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 509 AAA PF00004.24 132 8.8e-05 17.3 7.5 2 2 0.0006 0.094 7.5 1.6 48 116 206 278 185 296 0.69 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_9 - 436 PGK PF00162.14 384 0.00023 14.3 0.1 1 1 1.4e-06 0.00045 13.3 0.1 98 156 170 225 154 237 0.80 # 7870 # 9177 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.344 3_17 - 92 PAPS_reduct PF01507.14 174 1.1e-05 19.8 0.0 1 1 4.4e-08 1.4e-05 19.5 0.0 3 51 23 80 21 89 0.76 # 12070 # 12345 # 1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 2_25 - 478 Sigma54_activat PF00158.21 168 2.3e-05 18.5 0.0 1 1 5.4e-07 5.7e-05 17.2 0.0 4 50 217 263 214 283 0.78 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_48 - 444 Sigma54_activat PF00158.21 168 7.1e-05 16.8 0.0 1 1 1.4e-06 0.00015 15.8 0.0 15 51 205 241 195 258 0.81 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_8 - 509 Sigma54_activat PF00158.21 168 0.00011 16.2 0.0 1 1 2.1e-06 0.00022 15.3 0.0 22 56 43 77 25 87 0.86 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_32 - 645 MMR_HSR1 PF01926.18 116 0.00041 14.8 0.0 1 1 3.2e-05 0.005 11.3 0.0 4 62 252 308 250 371 0.67 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_66 - 289 MMR_HSR1 PF01926.18 116 0.00051 14.5 0.0 1 1 6.5e-05 0.01 10.3 0.0 10 58 18 154 15 228 0.61 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 3_37 - 103 N6_Mtase PF02384.11 311 2.3e-05 18.1 0.0 1 1 9e-08 2.8e-05 17.8 0.0 25 91 9 74 5 86 0.81 # 29480 # 29788 # 1 # ID=3_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.395 2_25 - 478 DUF258 PF03193.11 161 0.00053 13.7 0.0 1 1 1e-05 0.0011 12.7 0.0 5 59 204 259 200 329 0.87 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_32 - 645 DUF258 PF03193.11 161 0.0028 11.4 0.2 1 1 9.5e-05 0.01 9.6 0.0 39 66 251 278 244 353 0.71 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_66 - 289 DUF258 PF03193.11 161 0.0034 11.1 0.0 1 1 6.3e-05 0.0066 10.2 0.0 39 82 11 54 4 68 0.78 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_38 - 286 TraG-D_C PF12696.2 128 1.6e-22 74.3 0.9 1 1 2.7e-24 2.8e-22 73.5 0.4 22 125 6 100 3 102 0.84 # 33473 # 34330 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.326 2_6 - 1110 TraG-D_C PF12696.2 128 2.9e-13 44.4 0.9 1 1 1.2e-14 1.2e-12 42.3 0.0 3 125 539 659 538 661 0.84 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_39 - 612 TraG-D_C PF12696.2 128 0.00024 15.5 0.0 1 1 5.6e-06 0.00059 14.3 0.0 1 18 585 602 585 610 0.91 # 34293 # 36128 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.363 2_67 - 444 NAD_binding_2 PF03446.10 163 2.1e-08 28.7 0.5 1 2 6.1e-05 0.019 9.3 0.1 3 43 2 42 1 140 0.68 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_67 - 444 NAD_binding_2 PF03446.10 163 2.1e-08 28.7 0.5 2 2 2.8e-07 8.9e-05 16.9 0.0 15 93 333 409 332 423 0.89 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_24 - 273 AAA_31 PF13614.1 157 1.3e-20 68.4 0.1 1 1 2.1e-22 2.2e-20 67.7 0.1 1 152 6 171 6 174 0.86 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_66 - 289 AAA_31 PF13614.1 157 1.2e-10 36.1 1.0 1 2 9.3e-11 9.8e-09 29.8 0.6 3 134 9 159 8 178 0.72 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_66 - 289 AAA_31 PF13614.1 157 1.2e-10 36.1 1.0 2 2 0.08 8.4 0.8 0.0 80 121 159 200 153 219 0.84 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_16 - 493 AAA_31 PF13614.1 157 5.4e-07 24.2 0.1 1 1 1.1e-08 1.1e-06 23.1 0.1 1 152 219 374 219 379 0.79 # 15223 # 16701 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_32 - 645 NTPase_1 PF03266.10 168 0.00042 14.6 0.2 1 1 4.9e-06 0.0015 12.7 0.1 3 55 251 303 250 330 0.82 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 3_69 - 489 DnaB_C PF03796.10 259 0.00022 14.6 0.3 1 2 0.0011 0.35 4.2 0.0 19 49 203 233 195 238 0.83 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_69 - 489 DnaB_C PF03796.10 259 0.00022 14.6 0.3 2 2 6.7e-05 0.021 8.2 0.2 93 156 262 324 234 339 0.75 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_37 - 103 Methyltransf_26 PF13659.1 117 7.4e-08 27.0 0.0 1 1 3.1e-10 9.6e-08 26.6 0.0 4 43 36 80 34 95 0.87 # 29480 # 29788 # 1 # ID=3_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.395 2_67 - 444 NAD_Gly3P_dh_N PF01210.18 157 0.00013 16.2 0.9 1 1 2.9e-06 0.00092 13.5 0.1 2 138 3 155 2 176 0.75 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_67 - 444 2-Hacid_dh_C PF02826.14 178 8.9e-05 16.2 0.1 1 2 0.00059 0.093 6.4 0.0 38 75 2 38 1 58 0.81 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_67 - 444 2-Hacid_dh_C PF02826.14 178 8.9e-05 16.2 0.1 2 2 0.00027 0.042 7.5 0.0 51 101 334 386 333 407 0.77 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_52 - 102 2-Hacid_dh_C PF02826.14 178 0.00069 13.3 0.1 1 1 8.1e-06 0.0013 12.5 0.1 37 97 4 55 1 59 0.84 # 49000 # 49305 # 1 # ID=2_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 3_69 - 489 AAA_30 PF13604.1 196 8.4e-08 26.5 0.0 1 1 2.5e-09 7.8e-07 23.3 0.0 2 137 187 313 186 343 0.80 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_67 - 444 ApbA PF02558.11 151 5.9e-05 17.1 0.0 1 1 4.2e-07 0.00013 15.9 0.0 1 37 3 40 3 96 0.90 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_25 - 478 FtsK_SpoIIIE PF01580.13 205 4.7e-05 17.4 0.0 1 1 3.1e-07 9.9e-05 16.4 0.0 32 58 229 255 208 260 0.77 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_8 - 509 ABC_tran PF00005.22 137 0.00065 14.5 0.0 1 1 1.6e-05 0.0017 13.2 0.0 11 61 43 101 37 181 0.74 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_48 - 444 ABC_tran PF00005.22 137 0.00073 14.4 0.0 1 1 1.7e-05 0.0018 13.1 0.0 9 51 210 252 203 348 0.78 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_32 - 645 ABC_tran PF00005.22 137 0.0014 13.5 0.2 1 1 3.7e-05 0.0039 12.0 0.0 16 32 252 268 243 367 0.92 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 3_58 - 215 DNA_mis_repair PF01119.14 119 0.0006 13.8 0.0 1 2 1.6e-05 0.0051 10.8 0.0 62 101 54 93 19 105 0.81 # 47905 # 48549 # 1 # ID=3_58;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.375 3_58 - 215 DNA_mis_repair PF01119.14 119 0.0006 13.8 0.0 2 2 0.023 7.2 0.7 0.0 11 38 178 210 172 214 0.69 # 47905 # 48549 # 1 # ID=3_58;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.375 2_67 - 444 UDPG_MGDP_dh_N PF03721.9 185 5.2e-64 209.5 1.9 1 1 2.8e-66 8.9e-64 208.8 1.9 1 185 1 184 1 184 0.97 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_25 - 478 AAA_19 PF13245.1 76 0.0011 13.2 0.0 1 1 2e-05 0.0031 11.8 0.0 5 49 230 272 226 277 0.78 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_69 - 489 AAA_19 PF13245.1 76 0.0013 13.1 0.0 1 1 1.7e-05 0.0026 12.0 0.0 10 27 203 220 196 237 0.79 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_32 - 645 AAA_10 PF12846.2 304 1.4e-59 196.5 0.7 1 1 2.8e-61 1.8e-59 196.1 0.1 3 301 249 598 247 602 0.90 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 2_45 - 705 AAA_10 PF12846.2 304 6.7e-50 164.7 0.1 1 1 1.8e-51 1.1e-49 164.0 0.1 1 302 284 643 284 645 0.91 # 39509 # 41623 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_6 - 1110 AAA_10 PF12846.2 304 1.5e-10 35.5 0.1 1 2 3.9e-11 2.5e-09 31.5 0.0 3 267 220 578 218 599 0.69 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 2_6 - 1110 AAA_10 PF12846.2 304 1.5e-10 35.5 0.1 2 2 0.08 5 0.9 0.0 249 285 818 854 815 867 0.80 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_66 - 289 AAA_10 PF12846.2 304 0.00017 15.6 0.2 1 1 3.3e-06 0.00021 15.3 0.2 11 101 17 127 10 280 0.70 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_39 - 612 AAA_10 PF12846.2 304 0.00041 14.3 0.1 1 1 1.5e-05 0.00094 13.1 0.1 3 141 178 339 176 427 0.65 # 34293 # 36128 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.363 2_67 - 444 DAO PF01266.19 358 0.0041 10.5 0.4 1 1 2.5e-05 0.0079 9.6 0.4 2 29 3 30 2 34 0.92 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_25 - 478 ResIII PF04851.10 184 0.00018 15.9 0.0 1 1 6.2e-06 0.00048 14.5 0.0 22 64 226 279 196 308 0.78 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_41 - 175 ResIII PF04851.10 184 0.00038 14.8 0.0 1 1 6.3e-06 0.0005 14.5 0.0 137 164 30 71 4 90 0.63 # 32349 # 32873 # 1 # ID=3_41;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_48 - 444 ResIII PF04851.10 184 0.00081 13.8 0.1 1 1 2.7e-05 0.0021 12.4 0.1 22 48 196 234 121 250 0.68 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_32 - 645 ResIII PF04851.10 184 0.0019 12.5 0.9 1 1 4.8e-05 0.0038 11.6 0.1 88 170 451 535 423 550 0.66 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 3_37 - 103 Methyltransf_31 PF13847.1 152 0.00019 15.5 0.0 1 1 7.2e-07 0.00023 15.3 0.0 7 46 36 78 30 91 0.81 # 29480 # 29788 # 1 # ID=3_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 645 Zot PF05707.7 193 6.8e-06 20.2 0.8 1 1 2.2e-07 3.4e-05 17.9 0.1 34 129 458 556 444 557 0.66 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 3_69 - 489 Zot PF05707.7 193 0.00046 14.2 0.0 1 1 9.5e-06 0.0015 12.5 0.0 3 97 206 287 204 307 0.82 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_69 - 489 Viral_helicase1 PF01443.13 234 8.2e-07 23.2 0.0 1 1 5e-09 1.6e-06 22.3 0.0 1 232 206 469 206 471 0.69 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_69 - 489 DUF2075 PF09848.4 352 2.4e-12 41.0 1.6 1 2 4.6e-12 7.2e-10 32.8 0.5 2 207 204 378 203 390 0.76 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_69 - 489 DUF2075 PF09848.4 352 2.4e-12 41.0 1.6 2 2 0.00045 0.071 6.5 0.0 279 322 416 458 400 479 0.78 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_8 - 509 DUF2075 PF09848.4 352 0.00019 14.9 0.6 1 1 9.6e-06 0.0015 12.0 0.3 4 75 46 115 43 263 0.79 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_86 - 529 SPOUT_MTase PF02590.12 155 0.002 12.4 0.5 1 2 3.7e-05 0.011 9.9 0.0 13 87 297 373 288 385 0.83 # 74710 # 76296 # -1 # ID=1_86;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_86 - 529 SPOUT_MTase PF02590.12 155 0.002 12.4 0.5 2 2 0.078 25 -0.9 0.0 15 44 450 479 445 495 0.72 # 74710 # 76296 # -1 # ID=1_86;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_8 - 509 DEAD PF00270.24 169 0.00012 16.1 0.1 1 1 3e-05 0.0023 11.9 0.1 8 132 37 281 32 300 0.60 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_6 - 1110 DEAD PF00270.24 169 0.00032 14.8 0.1 1 1 1.8e-05 0.0014 12.6 0.0 18 69 222 298 204 348 0.76 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_48 - 444 DEAD PF00270.24 169 0.0012 12.9 0.0 1 1 3.3e-05 0.0026 11.8 0.0 10 33 207 231 202 335 0.89 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 2_25 - 478 DEAD PF00270.24 169 0.0015 12.5 0.0 1 1 6.9e-05 0.0054 10.7 0.0 13 56 234 277 222 282 0.79 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_67 - 444 Pyr_redox PF00070.22 80 7.2e-05 17.7 0.2 1 1 1.2e-06 0.00039 15.4 0.0 2 67 3 72 2 81 0.71 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_6 - 1110 TrwB_AAD_bind PF10412.4 386 3.5e-10 33.5 0.6 1 1 6.4e-11 4e-09 30.0 0.0 169 383 465 678 449 680 0.74 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_38 - 286 TrwB_AAD_bind PF10412.4 386 2.6e-07 24.1 0.4 1 1 9.1e-09 5.7e-07 22.9 0.3 277 364 18 100 13 115 0.85 # 33473 # 34330 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.326 1_39 - 612 TrwB_AAD_bind PF10412.4 386 1.7e-05 18.0 0.0 1 2 4.1e-06 0.00026 14.2 0.0 13 162 174 344 168 355 0.84 # 34293 # 36128 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_39 - 612 TrwB_AAD_bind PF10412.4 386 1.7e-05 18.0 0.0 2 2 0.031 2 1.4 0.0 222 261 558 602 538 610 0.64 # 34293 # 36128 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.363 2_25 - 478 TrwB_AAD_bind PF10412.4 386 6e-05 16.3 0.1 1 1 4.6e-06 0.00029 14.0 0.0 14 50 234 272 225 295 0.79 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_48 - 444 TrwB_AAD_bind PF10412.4 386 0.00018 14.7 0.0 1 1 4.7e-06 0.0003 14.0 0.0 15 62 212 259 206 314 0.75 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 3_69 - 489 AAA_11 PF13086.1 236 0.001 13.2 0.1 1 1 4.2e-06 0.0013 12.8 0.1 6 44 191 238 187 468 0.83 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_25 - 478 Sigma54_activ_2 PF14532.1 138 3.5e-05 18.4 0.0 1 1 8.5e-07 8.9e-05 17.1 0.0 3 44 217 258 215 277 0.87 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_8 - 509 Sigma54_activ_2 PF14532.1 138 0.0026 12.4 0.0 1 1 6.8e-05 0.0071 10.9 0.0 25 49 47 71 36 88 0.85 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_48 - 444 Sigma54_activ_2 PF14532.1 138 0.0033 12.0 0.0 1 1 9.6e-05 0.01 10.4 0.0 16 44 207 235 199 261 0.82 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_39 - 612 T4SS-DNA_transf PF02534.9 469 1.1e-28 94.5 1.0 1 2 2.9e-25 4.6e-23 76.0 0.4 31 258 164 409 134 414 0.73 # 34293 # 36128 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_39 - 612 T4SS-DNA_transf PF02534.9 469 1.1e-28 94.5 1.0 2 2 2.2e-07 3.5e-05 17.0 0.0 259 315 539 596 518 603 0.91 # 34293 # 36128 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_38 - 286 T4SS-DNA_transf PF02534.9 469 2.7e-12 40.4 1.6 1 1 1.8e-14 2.8e-12 40.4 0.4 325 433 6 110 2 140 0.82 # 33473 # 34330 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.326 1_66 - 289 ArgK PF03308.11 267 3.3e-05 17.3 0.0 1 1 1.9e-07 5.8e-05 16.5 0.0 38 82 16 59 6 91 0.85 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 2_25 - 478 RNA_helicase PF00910.17 107 0.00017 16.3 0.0 1 1 4.9e-06 0.00052 14.7 0.0 1 31 238 265 238 287 0.77 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_48 - 444 RNA_helicase PF00910.17 107 0.00036 15.2 0.0 1 1 1.1e-05 0.0012 13.6 0.0 1 75 215 292 215 317 0.75 # 40887 # 42218 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.352 1_8 - 509 RNA_helicase PF00910.17 107 0.00042 15.0 0.4 1 2 0.00055 0.058 8.1 0.1 2 26 47 71 46 88 0.71 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 509 RNA_helicase PF00910.17 107 0.00042 15.0 0.4 2 2 0.02 2.1 3.1 0.0 49 94 215 263 190 269 0.82 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 2_67 - 444 TrkA_N PF02254.13 116 5.4e-05 17.7 0.8 1 2 1.5e-05 0.0048 11.4 0.1 1 38 3 40 3 48 0.91 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 2_67 - 444 TrkA_N PF02254.13 116 5.4e-05 17.7 0.8 2 2 0.0041 1.3 3.6 0.1 13 61 334 380 331 407 0.79 # 63640 # 64971 # 1 # ID=2_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330 3_4 - 328 S1 PF00575.18 74 4.6e-05 18.0 5.6 1 3 0.022 7 1.4 0.0 20 46 82 119 77 137 0.71 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_4 - 328 S1 PF00575.18 74 4.6e-05 18.0 5.6 2 3 5.9e-06 0.0018 12.9 0.6 5 68 156 218 152 221 0.91 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_4 - 328 S1 PF00575.18 74 4.6e-05 18.0 5.6 3 3 0.0031 0.97 4.2 0.4 6 27 244 266 240 269 0.88 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_32 - 645 AAA_24 PF13479.1 213 0.0013 12.9 0.1 1 1 1.7e-05 0.0052 10.9 0.0 3 27 247 271 245 279 0.86 # 27138 # 29072 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_8 - 509 NACHT PF05729.7 166 6.1e-07 23.8 0.1 1 2 8.2e-06 0.0026 12.0 0.0 4 29 47 72 44 85 0.88 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 1_8 - 509 NACHT PF05729.7 166 6.1e-07 23.8 0.1 2 2 7.4e-05 0.023 8.8 0.0 50 100 184 242 177 294 0.69 # 6330 # 7856 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 3_69 - 489 AAA_25 PF13481.1 194 0.00034 14.6 0.0 1 1 7.8e-06 0.00082 13.3 0.0 29 58 202 228 186 318 0.78 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_25 - 478 AAA_25 PF13481.1 194 0.0006 13.7 0.0 1 1 1.3e-05 0.0013 12.6 0.0 36 77 238 279 206 281 0.84 # 24279 # 25712 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_66 - 289 AAA_25 PF13481.1 194 0.0013 12.7 0.0 1 1 7.9e-05 0.0082 10.0 0.0 37 73 11 49 5 54 0.84 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 1_66 - 289 AAA_5 PF07728.9 139 0.00012 16.4 0.0 1 1 1.2e-06 0.00019 15.7 0.0 9 67 17 79 15 108 0.86 # 56936 # 57802 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.318 3_69 - 489 AAA_5 PF07728.9 139 0.0005 14.3 0.0 1 1 1.1e-05 0.0017 12.6 0.0 3 94 207 298 206 340 0.72 # 53470 # 54936 # 1 # ID=3_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_24 - 273 APS_kinase PF01583.15 157 0.00023 15.4 0.0 1 1 1.4e-06 0.00042 14.5 0.0 10 57 14 61 6 71 0.88 # 23444 # 24262 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8b39f0a5-78c1-4c7c-8ce3-45d6f4f0a531 # Target file: checkm_output/bins/pGCA_002277915.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002277915.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8b39f0a5-78c1-4c7c-8ce3-45d6f4f0a531 checkm_output/bins/pGCA_002277915.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:35 2020 # [ok]