# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_18 - 248 MipZ PF09140.6 261 1.2e-14 45.6 0.1 1 1 6.3e-14 2.5e-12 38.0 0.1 2 148 2 166 1 172 0.67 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 YhjQ PF06564.7 244 5.1e-14 43.8 0.0 1 1 1.5e-15 6e-14 43.5 0.0 3 161 2 160 1 201 0.79 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_33 - 501 DUF87 PF01935.12 229 8.2e-07 20.6 0.0 1 1 7.8e-08 1.6e-06 19.7 0.0 14 65 212 262 194 314 0.82 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_29 - 883 DUF87 PF01935.12 229 3.2e-05 15.4 0.0 1 1 1.6e-06 3.2e-05 15.4 0.0 30 171 481 624 479 664 0.67 # 21458 # 24106 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 248 ATP_bind_1 PF03029.12 238 2.9e-05 15.3 0.2 1 1 3.4e-06 0.00014 13.1 0.1 6 108 11 134 9 140 0.59 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 SRP54 PF00448.17 196 0.00018 12.6 0.3 1 2 0.00012 0.0046 8.0 0.1 11 38 11 38 6 42 0.91 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 SRP54 PF00448.17 196 0.00018 12.6 0.3 2 2 0.0054 0.22 2.5 0.0 68 91 102 124 89 182 0.82 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 ArsA_ATPase PF02374.10 305 6.2e-10 30.1 0.8 1 2 1.4e-10 5.4e-09 27.0 0.6 9 81 9 79 2 210 0.77 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 ArsA_ATPase PF02374.10 305 6.2e-10 30.1 0.8 2 2 0.049 2 -1.1 0.0 57 108 162 217 152 240 0.47 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_33 - 501 T2SE PF00437.15 272 4e-06 17.5 0.0 1 2 0.015 0.61 0.5 0.0 36 73 159 196 139 206 0.80 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_33 - 501 T2SE PF00437.15 272 4e-06 17.5 0.0 2 2 1.2e-06 4.8e-05 13.9 0.0 126 162 217 253 203 289 0.81 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_18 - 248 VirC1 PF07015.6 231 6e-08 23.6 0.0 1 2 4.6e-07 1.8e-05 15.5 0.0 3 45 2 44 1 77 0.88 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 VirC1 PF07015.6 231 6e-08 23.6 0.0 2 2 0.00029 0.012 6.3 0.0 73 136 107 172 99 193 0.73 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 Fer4_NifH PF00142.13 273 3.3e-08 24.6 0.3 1 2 2e-08 8.1e-07 20.0 0.0 7 43 8 44 1 76 0.84 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_18 - 248 Fer4_NifH PF00142.13 273 3.3e-08 24.6 0.3 2 2 0.0032 0.13 3.0 0.1 187 246 188 245 135 247 0.74 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_33 - 501 AAA_16 PF13191.1 185 3.1e-05 15.6 0.0 1 1 1.3e-06 5.1e-05 14.9 0.0 22 141 217 348 207 365 0.58 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_33 - 501 AAA_23 PF13476.1 202 4e-06 18.8 0.1 1 1 2.4e-07 9.6e-06 17.6 0.1 20 131 220 338 209 497 0.73 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_18 - 248 CbiA PF01656.18 195 1.8e-41 133.3 0.2 1 1 5.3e-43 2.1e-41 133.0 0.2 1 188 3 209 3 228 0.82 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_33 - 501 AAA_29 PF13555.1 62 0.00035 11.8 0.0 1 1 1.8e-05 0.00074 10.7 0.0 15 40 212 236 201 251 0.75 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_18 - 248 AAA_31 PF13614.1 157 1.8e-16 52.1 0.0 1 1 1.6e-17 3.2e-16 51.3 0.0 2 154 2 152 1 154 0.80 # 11616 # 12359 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.375 1_36 - 186 AAA_31 PF13614.1 157 3.6e-06 18.6 0.0 1 2 5.3e-06 0.00011 13.8 0.0 1 41 2 42 2 57 0.92 # 28465 # 29022 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_36 - 186 AAA_31 PF13614.1 157 3.6e-06 18.6 0.0 2 2 0.014 0.28 2.7 0.0 116 136 79 101 74 137 0.81 # 28465 # 29022 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 1_33 - 501 FtsK_SpoIIIE PF01580.13 205 7.6e-24 75.9 0.0 1 1 3.3e-25 1.3e-23 75.1 0.0 26 204 207 371 189 372 0.90 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_33 - 501 ABC_tran PF00005.22 137 4.4e-06 18.7 0.0 1 1 4.5e-07 1.8e-05 16.7 0.0 1 43 209 258 209 354 0.65 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_29 - 883 AAA_10 PF12846.2 304 8.6e-38 122.0 0.0 1 1 6.9e-39 1.4e-37 121.3 0.0 2 303 475 779 474 780 0.92 # 21458 # 24106 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.408 1_33 - 501 AAA_10 PF12846.2 304 9.1e-14 43.1 0.0 1 2 3.1e-09 6.2e-08 23.9 0.0 2 40 220 258 219 279 0.90 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_33 - 501 AAA_10 PF12846.2 304 9.1e-14 43.1 0.0 2 2 4.1e-07 8.1e-06 17.0 0.0 222 294 318 398 294 409 0.86 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_33 - 501 DEAD PF00270.24 169 0.0004 11.5 0.0 1 1 1.7e-05 0.00068 10.8 0.0 15 70 220 307 209 360 0.74 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_33 - 501 DUF853 PF05872.7 504 0.00012 12.1 0.0 1 1 5.1e-06 0.00021 11.3 0.0 21 61 217 259 205 293 0.83 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_33 - 501 TrwB_AAD_bind PF10412.4 386 3e-05 14.3 0.0 1 1 1.2e-06 4.9e-05 13.6 0.0 15 54 219 258 209 272 0.91 # 25949 # 27451 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.407 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2cf4d3e0-dfe8-48b5-aeee-262bbcb1ec1f # Target file: checkm_output/bins/pGCA_002234575.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002234575.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2cf4d3e0-dfe8-48b5-aeee-262bbcb1ec1f checkm_output/bins/pGCA_002234575.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:29 2020 # [ok]