# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_11 - 270 IstB_IS21 PF01695.12 178 0.00025 13.1 0.1 1 2 2.4e-05 0.0019 10.2 0.0 56 83 25 52 12 55 0.90 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 2_11 - 270 IstB_IS21 PF01695.12 178 0.00025 13.1 0.1 2 2 0.029 2.3 0.1 0.0 72 124 64 117 57 123 0.78 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 2_11 - 270 MipZ PF09140.6 261 1.1e-12 40.1 0.1 1 1 3.2e-13 1.3e-11 36.6 0.1 3 143 18 173 16 184 0.70 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 3_7 - 217 MipZ PF09140.6 261 8e-11 34.0 0.1 1 2 1.9e-10 7.6e-09 27.5 0.0 2 104 3 106 2 108 0.66 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_7 - 217 MipZ PF09140.6 261 8e-11 34.0 0.1 2 2 0.00024 0.0094 7.6 0.1 86 140 65 120 51 211 0.85 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_7 - 217 YhjQ PF06564.7 244 1.8e-07 23.3 0.5 1 2 1.4e-06 0.00011 14.1 0.3 1 46 1 47 1 66 0.81 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_7 - 217 YhjQ PF06564.7 244 1.8e-07 23.3 0.5 2 2 0.00012 0.0095 7.8 0.0 93 234 55 199 37 209 0.70 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 2_11 - 270 CoaE PF01121.15 180 0.0002 13.4 0.1 1 2 1.2e-05 0.00098 11.1 0.0 22 73 99 150 94 155 0.91 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 2_11 - 270 CoaE PF01121.15 180 0.0002 13.4 0.1 2 2 0.077 6.2 -1.3 0.0 41 59 203 221 197 233 0.78 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_3 - 396 AAA_17 PF13207.1 121 1.6e-05 18.4 2.1 1 1 5e-06 0.00013 15.4 2.1 2 112 37 162 36 303 0.75 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 2_11 - 270 AAA_17 PF13207.1 121 0.00019 14.9 0.1 1 1 1.8e-05 0.00049 13.5 0.1 9 49 26 72 25 149 0.71 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 3_7 - 217 AAA_17 PF13207.1 121 0.00052 13.5 0.0 1 1 2.6e-05 0.00069 13.1 0.0 9 77 12 86 11 191 0.72 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 2_11 - 270 MobB PF03205.9 140 2e-05 16.9 0.0 1 1 1.1e-06 4.6e-05 15.8 0.0 6 42 20 57 15 77 0.80 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 3_7 - 217 MobB PF03205.9 140 0.0005 12.4 0.0 1 1 2.2e-05 0.00086 11.6 0.0 10 43 12 44 2 76 0.87 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 2_11 - 270 ArsA_ATPase PF02374.10 305 4.3e-08 25.1 0.1 1 1 7e-09 2.8e-07 22.4 0.1 9 49 24 63 16 142 0.77 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 3_7 - 217 ArsA_ATPase PF02374.10 305 1.1e-07 23.7 0.1 1 1 4.9e-09 2e-07 22.9 0.0 4 56 5 58 1 73 0.82 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_7 - 217 Methyltransf_24 PF13578.1 106 1.1e-05 18.8 0.0 1 1 3.9e-07 3.1e-05 17.4 0.0 7 93 13 102 11 106 0.79 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_3 - 396 Zeta_toxin PF06414.7 201 3.8e-65 211.3 0.4 1 1 7.2e-67 5.7e-65 210.7 0.4 2 200 22 217 21 218 0.98 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 3_7 - 217 VirC1 PF07015.6 231 6.2e-10 31.1 0.0 1 1 1.2e-11 9.6e-10 30.5 0.0 1 131 1 126 1 177 0.74 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 1_3 - 396 AAA_16 PF13191.1 185 3.9e-05 16.3 0.1 1 2 2e-06 0.00016 14.3 0.0 14 71 23 77 17 110 0.65 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_3 - 396 AAA_16 PF13191.1 185 3.9e-05 16.3 0.1 2 2 0.083 6.6 -0.8 0.0 142 142 256 256 127 355 0.66 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_3 - 396 AAA_18 PF13238.1 129 1.8e-05 17.6 0.0 1 2 4.9e-06 0.00039 13.3 0.0 1 82 37 121 37 153 0.67 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_3 - 396 AAA_18 PF13238.1 129 1.8e-05 17.6 0.0 2 2 0.022 1.7 1.5 0.0 15 62 261 306 258 342 0.83 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 2_11 - 270 CbiA PF01656.18 195 1.2e-27 89.2 0.0 1 1 6.7e-29 1.8e-27 88.6 0.0 2 170 19 206 18 227 0.77 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 3_7 - 217 CbiA PF01656.18 195 1.8e-22 72.2 0.0 1 1 9e-24 2.4e-22 71.9 0.0 2 161 5 142 4 172 0.78 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 2_6 - 236 CbiA PF01656.18 195 6.3e-07 21.5 0.0 1 2 0.00077 0.021 6.8 0.0 1 20 3 22 3 24 0.91 # 2184 # 2891 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_6 - 236 CbiA PF01656.18 195 6.3e-07 21.5 0.0 2 2 1.4e-05 0.00037 12.5 0.0 118 164 94 140 30 149 0.90 # 2184 # 2891 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 14_1 - 212 NAD_binding_11 PF14833.1 122 2.1e-06 20.5 1.7 1 6 0.066 2.7 0.7 0.0 26 49 15 38 14 48 0.77 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 NAD_binding_11 PF14833.1 122 2.1e-06 20.5 1.7 2 6 0.0029 0.12 5.1 0.0 26 52 49 74 47 84 0.81 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 NAD_binding_11 PF14833.1 122 2.1e-06 20.5 1.7 3 6 0.0058 0.23 4.1 0.0 26 50 83 107 81 118 0.82 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 NAD_binding_11 PF14833.1 122 2.1e-06 20.5 1.7 4 6 0.028 1.1 1.9 0.0 27 53 118 143 116 170 0.61 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 NAD_binding_11 PF14833.1 122 2.1e-06 20.5 1.7 5 6 0.037 1.5 1.6 0.0 26 49 151 174 149 185 0.78 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 NAD_binding_11 PF14833.1 122 2.1e-06 20.5 1.7 6 6 0.073 2.9 0.6 0.0 26 45 185 204 183 211 0.82 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 21_1 - 94 NAD_binding_11 PF14833.1 122 0.00012 14.8 0.1 1 2 0.00085 0.034 6.8 0.0 26 52 14 39 12 49 0.80 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 21_1 - 94 NAD_binding_11 PF14833.1 122 0.00012 14.8 0.1 2 2 0.0011 0.043 6.5 0.0 26 51 48 73 46 92 0.82 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 3_7 - 217 AAA_31 PF13614.1 157 2.6e-10 33.0 0.0 1 2 8.9e-08 3.6e-06 19.6 0.0 1 43 2 45 2 53 0.89 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 3_7 - 217 AAA_31 PF13614.1 157 2.6e-10 33.0 0.0 2 2 2.5e-05 0.001 11.6 0.0 111 153 71 113 52 117 0.89 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 2_11 - 270 AAA_31 PF13614.1 157 7.9e-09 28.2 0.0 1 1 1.3e-09 5.3e-08 25.5 0.0 9 151 24 161 17 167 0.69 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 1_3 - 396 AAA_33 PF13671.1 143 9e-08 24.7 0.8 1 2 1.4e-08 1.1e-06 21.2 0.1 2 123 37 165 36 183 0.79 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_3 - 396 AAA_33 PF13671.1 143 9e-08 24.7 0.8 2 2 0.014 1.1 1.7 0.1 67 96 248 280 206 309 0.76 # 2290 # 3477 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 1 10 0.015 0.2 4.1 0.0 22 51 25 56 21 65 0.75 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 2 10 0.0067 0.089 5.2 0.0 22 52 59 91 56 100 0.78 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 3 10 0.015 0.19 4.2 0.0 22 51 93 124 91 134 0.73 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 4 10 0.01 0.14 4.6 0.0 22 51 127 158 123 168 0.74 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 5 10 0.0058 0.077 5.4 0.0 22 51 161 192 160 202 0.72 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 6 10 0.0049 0.066 5.7 0.0 22 50 195 225 192 236 0.73 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 7 10 0.0065 0.086 5.3 0.0 22 52 229 261 225 270 0.78 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 8 10 0.017 0.23 3.9 0.0 22 51 263 294 262 303 0.73 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 9 10 0.0099 0.13 4.7 0.0 22 61 297 336 293 338 0.77 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 11_1 - 350 RBD PF02196.10 71 5.7e-15 47.5 6.6 10 10 0.032 0.43 3.1 0.0 22 40 331 349 328 350 0.85 # 3 # 1052 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 14_1 - 212 RBD PF02196.10 71 5.4e-12 38.0 1.7 1 6 0.0032 0.043 6.3 0.0 22 52 8 40 5 49 0.78 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 RBD PF02196.10 71 5.4e-12 38.0 1.7 2 6 0.0061 0.081 5.4 0.0 22 51 42 73 38 82 0.76 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 RBD PF02196.10 71 5.4e-12 38.0 1.7 3 6 0.0023 0.031 6.7 0.0 22 51 76 107 73 116 0.74 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 RBD PF02196.10 71 5.4e-12 38.0 1.7 4 6 0.0035 0.047 6.1 0.0 22 52 110 142 109 151 0.77 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 RBD PF02196.10 71 5.4e-12 38.0 1.7 5 6 0.0028 0.037 6.4 0.0 22 52 144 176 143 185 0.77 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 RBD PF02196.10 71 5.4e-12 38.0 1.7 6 6 0.01 0.13 4.7 0.0 22 50 178 207 177 211 0.75 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 7_2 - 589 RBD PF02196.10 71 5.2e-09 28.4 3.6 1 7 0.02 0.26 3.7 0.0 22 50 317 347 314 358 0.74 # 567 # 2333 # 1 # ID=7_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 7_2 - 589 RBD PF02196.10 71 5.2e-09 28.4 3.6 2 7 0.026 0.35 3.3 0.0 22 51 351 382 347 392 0.74 # 567 # 2333 # 1 # ID=7_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 7_2 - 589 RBD PF02196.10 71 5.2e-09 28.4 3.6 3 7 0.028 0.38 3.2 0.0 22 51 385 416 383 426 0.73 # 567 # 2333 # 1 # ID=7_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 7_2 - 589 RBD PF02196.10 71 5.2e-09 28.4 3.6 4 7 0.027 0.36 3.3 0.0 22 51 419 450 414 460 0.75 # 567 # 2333 # 1 # ID=7_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 7_2 - 589 RBD PF02196.10 71 5.2e-09 28.4 3.6 5 7 0.024 0.32 3.5 0.0 22 50 487 517 483 528 0.73 # 567 # 2333 # 1 # ID=7_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 7_2 - 589 RBD PF02196.10 71 5.2e-09 28.4 3.6 6 7 0.039 0.52 2.8 0.0 22 47 521 546 518 557 0.75 # 567 # 2333 # 1 # ID=7_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 7_2 - 589 RBD PF02196.10 71 5.2e-09 28.4 3.6 7 7 0.034 0.45 3.0 0.0 22 50 555 584 551 588 0.76 # 567 # 2333 # 1 # ID=7_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 17_1 - 178 RBD PF02196.10 71 1.3e-08 27.1 0.7 1 5 0.0048 0.063 5.7 0.0 22 52 8 39 5 48 0.77 # 2 # 535 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.704 17_1 - 178 RBD PF02196.10 71 1.3e-08 27.1 0.7 2 5 0.032 0.43 3.1 0.0 22 50 41 71 36 82 0.72 # 2 # 535 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.704 17_1 - 178 RBD PF02196.10 71 1.3e-08 27.1 0.7 3 5 0.0038 0.05 6.0 0.0 22 61 75 114 71 116 0.78 # 2 # 535 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.704 17_1 - 178 RBD PF02196.10 71 1.3e-08 27.1 0.7 4 5 0.0051 0.068 5.6 0.0 22 51 109 140 108 150 0.71 # 2 # 535 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.704 17_1 - 178 RBD PF02196.10 71 1.3e-08 27.1 0.7 5 5 0.0082 0.11 4.9 0.0 22 47 143 168 139 177 0.75 # 2 # 535 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.704 21_1 - 94 RBD PF02196.10 71 3.9e-07 22.4 0.1 1 3 0.0016 0.021 7.2 0.0 22 52 7 39 4 48 0.75 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 21_1 - 94 RBD PF02196.10 71 3.9e-07 22.4 0.1 2 3 0.00041 0.0054 9.1 0.0 22 62 41 81 38 82 0.79 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 21_1 - 94 RBD PF02196.10 71 3.9e-07 22.4 0.1 3 3 0.0047 0.063 5.7 0.0 22 40 75 93 70 94 0.86 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 12_1 - 315 RBD PF02196.10 71 0.00062 12.1 0.0 1 2 0.0041 0.055 5.9 0.0 22 52 23 54 19 63 0.77 # 2 # 946 # -1 # ID=12_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.642 12_1 - 315 RBD PF02196.10 71 0.00062 12.1 0.0 2 2 0.015 0.19 4.2 0.0 22 45 56 79 55 90 0.74 # 2 # 946 # -1 # ID=12_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.642 2_11 - 270 AAA_10 PF12846.2 304 0.00029 12.9 0.0 1 2 1.5e-05 0.0012 10.9 0.0 11 43 26 59 24 86 0.85 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 2_11 - 270 AAA_10 PF12846.2 304 0.00029 12.9 0.0 2 2 0.042 3.4 -0.5 0.0 26 101 125 219 119 259 0.61 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 14_1 - 212 UvrB PF12344.3 44 7.2e-07 21.3 0.0 1 6 0.054 2.2 0.6 0.0 29 39 18 28 17 31 0.86 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 UvrB PF12344.3 44 7.2e-07 21.3 0.0 2 6 0.011 0.43 2.8 0.0 29 39 52 62 51 66 0.87 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 UvrB PF12344.3 44 7.2e-07 21.3 0.0 3 6 0.0075 0.3 3.3 0.0 29 39 86 96 85 100 0.88 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 UvrB PF12344.3 44 7.2e-07 21.3 0.0 4 6 0.054 2.2 0.6 0.0 29 39 120 130 119 133 0.86 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 UvrB PF12344.3 44 7.2e-07 21.3 0.0 5 6 0.011 0.43 2.8 0.0 29 39 154 164 153 168 0.87 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 14_1 - 212 UvrB PF12344.3 44 7.2e-07 21.3 0.0 6 6 0.027 1.1 1.6 0.0 29 39 188 198 187 202 0.87 # 1 # 636 # 1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.708 21_1 - 94 UvrB PF12344.3 44 0.0011 11.1 0.0 1 3 0.0092 0.37 3.1 0.0 29 39 17 27 16 31 0.87 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 21_1 - 94 UvrB PF12344.3 44 0.0011 11.1 0.0 2 3 0.012 0.48 2.7 0.0 29 39 51 61 50 65 0.87 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 21_1 - 94 UvrB PF12344.3 44 0.0011 11.1 0.0 3 3 0.031 1.2 1.4 0.0 29 38 85 94 84 94 0.87 # 1 # 282 # 1 # ID=21_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 3_7 - 217 AAA_25 PF13481.1 194 0.00027 13.0 0.3 1 1 2.1e-05 0.00085 11.3 0.3 42 83 11 43 3 102 0.62 # 3366 # 4016 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.599 2_11 - 270 AAA_25 PF13481.1 194 0.00038 12.5 0.1 1 1 2.4e-05 0.00096 11.1 0.1 41 150 24 136 6 142 0.65 # 5137 # 5946 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bc6d7318-c108-432d-b70a-22d9290d1ec9 # Target file: checkm_output/bins/pGCA_002224545.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002224545.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bc6d7318-c108-432d-b70a-22d9290d1ec9 checkm_output/bins/pGCA_002224545.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:27 2020 # [ok]