# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 197 cobW PF02492.14 178 1e-05 18.1 0.0 1 1 1.5e-07 1.6e-05 17.4 0.0 5 71 6 92 4 110 0.68 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_77 - 278 MipZ PF09140.6 261 2.8e-08 26.1 0.3 1 2 3.1e-08 3.5e-06 19.3 0.1 2 41 21 60 20 72 0.91 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 278 MipZ PF09140.6 261 2.8e-08 26.1 0.3 2 2 0.00075 0.084 4.9 0.0 87 124 129 166 83 172 0.80 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 278 YhjQ PF06564.7 244 1.1e-07 24.5 0.0 1 1 1.9e-09 2.1e-07 23.6 0.0 3 151 21 174 19 182 0.81 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_22 - 159 SSB PF00436.20 104 2.3e-41 133.0 0.5 1 1 2.6e-43 2.9e-41 132.7 0.5 1 104 2 103 2 103 0.99 # 18255 # 18731 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_3 - 197 DUF87 PF01935.12 229 0.00016 14.6 0.2 1 1 2.3e-06 0.00025 13.9 0.2 25 96 3 63 2 177 0.71 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_1 - 374 AAA_22 PF13401.1 131 2.4e-05 17.5 0.1 1 1 1.5e-06 5.6e-05 16.4 0.1 4 37 139 186 134 296 0.74 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 656 AAA_22 PF13401.1 131 4.3e-05 16.8 0.4 1 2 0.00061 0.023 7.9 0.0 6 24 256 274 251 300 0.89 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 AAA_22 PF13401.1 131 4.3e-05 16.8 0.4 2 2 0.0029 0.11 5.7 0.0 78 101 510 535 439 562 0.81 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_3 - 197 AAA_22 PF13401.1 131 0.00024 14.4 0.0 1 1 1.3e-05 0.0005 13.3 0.0 8 31 5 28 2 178 0.75 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_49 - 523 DNA_methylase PF00145.12 335 5e-57 186.5 0.4 1 1 1.7e-58 9.4e-57 185.6 0.4 2 333 190 503 189 505 0.84 # 39764 # 41332 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_61 - 458 DNA_methylase PF00145.12 335 1.7e-30 99.2 0.0 1 1 6.7e-32 3.7e-30 98.2 0.0 3 331 11 437 10 439 0.66 # 49727 # 51100 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.459 1_1 - 374 AAA_17 PF13207.1 121 0.00016 15.5 0.0 1 1 9.8e-06 0.00037 14.4 0.0 2 76 142 225 142 275 0.60 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_3 - 197 AAA_17 PF13207.1 121 0.00026 14.9 0.1 1 1 1.9e-05 0.0007 13.5 0.1 3 77 5 80 4 184 0.66 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_10 - 656 AAA_17 PF13207.1 121 0.0015 12.4 0.8 1 1 0.00017 0.0062 10.5 0.8 3 20 258 275 258 551 0.86 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_1 - 374 Miro PF08477.8 119 4.3e-05 17.1 0.2 1 1 1.4e-06 0.00015 15.3 0.1 2 41 142 179 141 219 0.65 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_77 - 278 LpxK PF02606.9 326 0.00047 12.2 0.1 1 1 6.4e-06 0.00072 11.6 0.1 35 71 19 54 6 65 0.90 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_39 - 1010 Helicase_C PF00271.26 78 6.9e-08 25.4 0.0 1 1 2.1e-09 2.3e-07 23.7 0.0 7 76 857 928 851 930 0.89 # 30016 # 33045 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_77 - 278 ArsA_ATPase PF02374.10 305 2.2e-08 26.5 2.9 1 1 5e-09 5.7e-07 21.9 2.9 9 49 28 68 20 201 0.87 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_1 - 374 T2SE PF00437.15 272 4.8e-39 126.9 0.1 1 1 5.9e-41 6.6e-39 126.4 0.1 4 259 20 278 17 293 0.85 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_1 - 374 Zeta_toxin PF06414.7 201 6.8e-05 15.1 0.0 1 1 4.6e-06 0.00026 13.2 0.0 18 55 141 178 129 224 0.86 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_3 - 197 Zeta_toxin PF06414.7 201 0.0004 12.6 0.0 1 1 1.9e-05 0.0011 11.2 0.0 23 93 8 76 6 80 0.88 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_40 - 267 Ribosomal_S7 PF00177.16 148 6e-05 15.7 0.1 1 1 8.6e-07 9.6e-05 15.1 0.1 38 143 36 161 32 164 0.79 # 33145 # 33945 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_77 - 278 VirC1 PF07015.6 231 6.8e-06 18.3 2.3 1 2 1.6e-05 0.0018 10.4 0.2 2 39 20 57 19 63 0.84 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 278 VirC1 PF07015.6 231 6.8e-06 18.3 2.3 2 2 0.0001 0.012 7.8 0.1 83 143 140 200 132 220 0.75 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 278 Fer4_NifH PF00142.13 273 1.2e-07 24.2 1.1 1 2 3.6e-08 4.1e-06 19.2 0.1 8 64 28 88 22 99 0.80 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 278 Fer4_NifH PF00142.13 273 1.2e-07 24.2 1.1 2 2 0.0015 0.17 4.1 0.1 142 248 163 273 140 277 0.76 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_1 - 374 Arch_ATPase PF01637.13 234 0.00027 13.7 0.6 1 1 8e-06 0.0009 12.0 0.1 11 48 131 167 125 188 0.79 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_1 - 374 AAA_18 PF13238.1 129 0.00018 14.9 0.0 1 1 9.5e-06 0.00036 13.9 0.0 1 23 142 168 142 257 0.69 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_3 - 197 AAA_18 PF13238.1 129 0.00055 13.3 0.2 1 1 3e-05 0.0011 12.3 0.2 3 58 6 61 5 191 0.75 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_10 - 656 AAA_18 PF13238.1 129 0.00058 13.3 1.0 1 1 6e-05 0.0023 11.4 0.0 3 28 259 282 258 350 0.77 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_77 - 278 CbiA PF01656.18 195 6.1e-37 120.0 0.2 1 1 7.5e-39 8.4e-37 119.5 0.2 3 190 24 238 22 243 0.78 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_1 - 374 AAA_14 PF13173.1 128 0.00029 13.8 0.7 1 1 2.6e-05 0.0014 11.6 0.6 5 93 142 250 138 311 0.71 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 656 AAA_14 PF13173.1 128 0.00071 12.6 6.2 1 3 0.013 0.72 2.8 0.6 30 119 77 177 60 184 0.70 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 AAA_14 PF13173.1 128 0.00071 12.6 6.2 2 3 0.00068 0.038 7.0 0.0 6 87 258 328 253 354 0.73 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 AAA_14 PF13173.1 128 0.00071 12.6 6.2 3 3 0.0071 0.4 3.7 0.1 54 80 511 538 453 592 0.72 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 AAA PF00004.24 132 0.018 8.3 7.2 1 4 0.0018 0.2 4.9 0.8 67 117 76 128 67 143 0.81 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 AAA PF00004.24 132 0.018 8.3 7.2 2 4 0.062 7 -0.1 0.0 29 56 145 171 129 183 0.67 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 AAA PF00004.24 132 0.018 8.3 7.2 3 4 0.017 1.9 1.8 0.0 3 19 259 275 258 308 0.89 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 AAA PF00004.24 132 0.018 8.3 7.2 4 4 0.025 2.8 1.2 0.1 48 74 513 535 470 553 0.75 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_39 - 1010 N6_Mtase PF02384.11 311 2.4e-13 42.8 0.2 1 1 8.4e-15 9.4e-13 40.9 0.2 19 235 68 254 58 275 0.72 # 30016 # 33045 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_102 - 785 TraG-D_C PF12696.2 128 9.6e-36 115.6 0.4 1 1 2.8e-37 3.2e-35 113.9 0.0 2 127 475 591 474 592 0.86 # 77596 # 79950 # 1 # ID=1_102;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_77 - 278 AAA_31 PF13614.1 157 8.4e-13 41.6 0.1 1 1 2.7e-14 3e-12 39.8 0.1 1 155 20 177 20 179 0.83 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_1 - 374 AAA_33 PF13671.1 143 0.00074 12.5 0.1 1 2 0.062 7 -0.4 0.0 27 59 40 72 24 83 0.71 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_1 - 374 AAA_33 PF13671.1 143 0.00074 12.5 0.1 2 2 3.4e-05 0.0038 10.2 0.0 2 45 142 189 142 252 0.70 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_39 - 1010 Methyltransf_26 PF13659.1 117 3.7e-15 49.1 0.0 1 1 6.7e-17 7.5e-15 48.1 0.0 2 116 97 200 96 201 0.86 # 30016 # 33045 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_10 - 656 FtsK_SpoIIIE PF01580.13 205 0.00095 11.7 0.6 1 2 8e-05 0.0089 8.5 0.3 35 56 248 272 235 275 0.81 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 FtsK_SpoIIIE PF01580.13 205 0.00095 11.7 0.6 2 2 0.02 2.3 0.7 0.0 146 190 511 551 457 565 0.74 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_39 - 1010 MTS PF05175.9 170 1e-06 21.3 0.0 1 1 2.1e-08 2.3e-06 20.1 0.0 20 145 84 205 81 227 0.75 # 30016 # 33045 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_1 - 374 ABC_tran PF00005.22 137 8.1e-05 16.0 0.0 1 1 3e-06 0.00017 15.0 0.0 12 42 140 169 130 253 0.80 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_3 - 197 ABC_tran PF00005.22 137 0.00067 13.0 0.1 1 1 2.4e-05 0.0014 12.0 0.1 15 80 5 86 3 155 0.71 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_3 - 197 ATP-synt_ab PF00006.20 215 0.00077 12.0 0.0 1 1 1.6e-05 0.0018 10.8 0.0 20 113 6 124 2 193 0.70 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_39 - 1010 Eco57I PF07669.6 106 8.3e-06 19.2 4.3 1 1 1.2e-07 1.3e-05 18.6 0.3 2 104 154 253 153 255 0.68 # 30016 # 33045 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_10 - 656 AAA_10 PF12846.2 304 1.7e-69 227.6 1.0 1 1 5.6e-71 3.2e-69 226.7 1.0 2 301 255 609 254 613 0.90 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_3 - 197 AAA_10 PF12846.2 304 0.00024 13.7 0.1 1 2 7.6e-05 0.0042 9.5 0.0 2 43 2 41 1 76 0.78 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_3 - 197 AAA_10 PF12846.2 304 0.00024 13.7 0.1 2 2 0.013 0.76 2.1 0.0 240 281 131 167 119 169 0.86 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_10 - 656 ResIII PF04851.10 184 0.00021 14.2 0.1 1 2 0.083 9.3 -0.9 0.1 24 44 253 273 242 285 0.79 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 ResIII PF04851.10 184 0.00021 14.2 0.1 2 2 1.9e-06 0.00021 14.2 0.1 107 171 454 543 405 558 0.79 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_10 - 656 Zot PF05707.7 193 0.00034 13.2 0.5 1 1 1.1e-05 0.0012 11.3 0.1 32 127 462 565 452 605 0.67 # 8530 # 10497 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_39 - 1010 DEAD PF00270.24 169 2.5e-09 29.9 0.0 1 1 7.4e-11 8.3e-09 28.2 0.0 2 164 484 636 483 641 0.73 # 30016 # 33045 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 1_94 - 512 PrmA PF06325.8 295 0.00045 12.4 0.2 1 2 4e-06 0.00045 12.4 0.2 7 125 88 210 83 217 0.82 # 71979 # 73514 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_94 - 512 PrmA PF06325.8 295 0.00045 12.4 0.2 2 2 0.071 7.9 -1.5 0.4 16 16 347 347 240 421 0.64 # 71979 # 73514 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_1 - 374 DUF853 PF05872.7 504 0.001 10.5 0.8 1 3 0.0012 0.13 3.5 0.0 332 397 61 129 29 142 0.76 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_1 - 374 DUF853 PF05872.7 504 0.001 10.5 0.8 2 3 0.00043 0.048 5.0 0.2 25 45 143 163 127 175 0.82 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_1 - 374 DUF853 PF05872.7 504 0.001 10.5 0.8 3 3 0.081 9 -2.5 0.0 339 376 216 250 211 277 0.67 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_40 - 267 Methyltransf_27 PF13708.1 194 1e-06 21.4 1.3 1 2 0.044 4.9 -0.3 0.1 120 166 29 77 17 99 0.69 # 33145 # 33945 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_40 - 267 Methyltransf_27 PF13708.1 194 1e-06 21.4 1.3 2 2 9.3e-09 1e-06 21.4 1.3 77 180 148 257 117 265 0.74 # 33145 # 33945 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_102 - 785 TrwB_AAD_bind PF10412.4 386 1.1e-18 60.1 0.0 1 2 0.013 0.48 2.0 0.0 17 134 196 331 189 350 0.55 # 77596 # 79950 # 1 # ID=1_102;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_102 - 785 TrwB_AAD_bind PF10412.4 386 1.1e-18 60.1 0.0 2 2 6.5e-19 2.4e-17 55.6 0.0 229 373 458 598 425 605 0.83 # 77596 # 79950 # 1 # ID=1_102;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_3 - 197 TrwB_AAD_bind PF10412.4 386 9.6e-06 17.4 0.1 1 1 4.3e-07 1.6e-05 16.7 0.1 17 58 3 42 1 51 0.89 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_1 - 374 TrwB_AAD_bind PF10412.4 386 0.00024 12.8 0.0 1 1 1e-05 0.00039 12.1 0.0 16 51 140 175 131 190 0.85 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_77 - 278 ParA PF10609.4 81 1.4e-06 21.3 0.2 1 1 2.4e-08 2.7e-06 20.3 0.2 2 60 142 204 141 216 0.81 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_22 - 159 tRNA_anti_2 PF13742.1 99 0.00025 14.0 0.0 1 1 3.2e-06 0.00036 13.5 0.0 50 94 47 92 27 97 0.78 # 18255 # 18731 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_102 - 785 T4SS-DNA_transf PF02534.9 469 5.2e-48 156.7 1.0 1 1 6.9e-50 7.7e-48 156.2 1.0 48 433 198 599 148 605 0.84 # 77596 # 79950 # 1 # ID=1_102;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_77 - 278 ArgK PF03308.11 267 4e-05 15.5 0.0 1 1 6.9e-07 7.8e-05 14.6 0.0 28 76 18 67 9 81 0.82 # 59228 # 60061 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.362 1_94 - 512 tRNA-synt_His PF13393.1 311 0.00046 12.3 0.8 1 3 1.9e-05 0.0022 10.1 0.0 151 256 75 173 70 190 0.80 # 71979 # 73514 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_94 - 512 tRNA-synt_His PF13393.1 311 0.00046 12.3 0.8 2 3 0.052 5.8 -1.2 0.0 171 239 229 289 216 301 0.75 # 71979 # 73514 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_94 - 512 tRNA-synt_His PF13393.1 311 0.00046 12.3 0.8 3 3 0.095 11 -2.0 0.1 162 181 364 383 329 430 0.54 # 71979 # 73514 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_1 - 374 Pox_A32 PF04665.7 241 6e-06 18.7 0.0 1 1 2.3e-07 1.3e-05 17.6 0.0 9 54 135 179 129 194 0.83 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_3 - 197 Pox_A32 PF04665.7 241 2.9e-05 16.5 0.1 1 1 9e-07 5e-05 15.7 0.1 17 45 5 33 3 104 0.91 # 2091 # 2681 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.350 1_1 - 374 RNA_helicase PF00910.17 107 0.00084 12.6 0.0 1 1 4.4e-05 0.0049 10.2 0.0 1 23 142 164 142 190 0.84 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_22 - 159 tRNA_anti-codon PF01336.20 75 9.5e-09 28.2 0.1 1 1 1.5e-10 1.6e-08 27.4 0.1 27 69 47 97 36 103 0.80 # 18255 # 18731 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_1 - 374 AAA_25 PF13481.1 194 0.00082 11.9 0.0 1 1 1.5e-05 0.0017 10.8 0.0 36 76 142 184 108 187 0.76 # 708 # 1829 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_39 - 1010 SNF2_N PF00176.18 299 6.1e-18 57.6 0.6 1 1 5.4e-20 6.1e-18 57.6 0.6 28 297 499 805 477 807 0.80 # 30016 # 33045 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.385 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5dd5f900-c114-43e9-8b5c-f3e3e3333e16 # Target file: checkm_output/bins/pGCA_002216085.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002216085.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5dd5f900-c114-43e9-8b5c-f3e3e3333e16 checkm_output/bins/pGCA_002216085.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:20 2020 # [ok]