# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 702 ABC_ATPase PF09818.4 448 9.3e-05 13.4 1.2 1 2 0.051 3.4 -1.6 0.1 241 262 478 500 475 504 0.78 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_22 - 702 ABC_ATPase PF09818.4 448 9.3e-05 13.4 1.2 2 2 2.4e-06 0.00016 12.6 0.1 303 373 572 638 552 669 0.79 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 Rad17 PF03215.10 519 0.00015 12.8 0.0 1 1 3.6e-06 0.00024 12.1 0.0 32 76 497 541 489 613 0.88 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 IstB_IS21 PF01695.12 178 5.1e-60 194.2 0.6 1 1 1.3e-61 8.5e-60 193.5 0.6 2 178 53 229 52 229 0.99 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_14 - 192 MipZ PF09140.6 261 9.6e-08 23.7 0.0 1 2 1.5e-08 5e-07 21.3 0.0 2 40 3 41 2 50 0.88 # 13934 # 14509 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_14 - 192 MipZ PF09140.6 261 9.6e-08 23.7 0.0 2 2 0.063 2.1 -0.4 0.0 181 240 115 174 111 187 0.59 # 13934 # 14509 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_3 - 180 MipZ PF09140.6 261 5.8e-06 17.8 0.5 1 2 0.00012 0.0039 8.6 0.0 3 48 4 48 2 53 0.86 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 MipZ PF09140.6 261 5.8e-06 17.8 0.5 2 2 0.00011 0.0038 8.6 0.3 96 137 54 101 41 175 0.72 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 DUF87 PF01935.12 229 3.9e-05 15.9 4.3 1 1 1.4e-06 4.8e-05 15.6 0.2 26 47 485 506 475 515 0.85 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_38 - 247 DUF87 PF01935.12 229 0.01 8.0 6.3 1 2 0.013 0.42 2.7 2.6 128 190 18 85 2 103 0.58 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 DUF87 PF01935.12 229 0.01 8.0 6.3 2 2 0.00062 0.021 6.9 0.1 26 48 101 123 93 130 0.82 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_22 - 702 AAA_22 PF13401.1 131 8.3e-07 21.6 0.4 1 1 6.5e-07 1.1e-05 18.0 0.4 9 106 487 629 480 652 0.66 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 AAA_22 PF13401.1 131 7.3e-06 18.5 0.4 1 1 3.6e-06 6e-05 15.6 0.0 5 37 511 566 507 679 0.57 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_3 - 180 AAA_22 PF13401.1 131 1.3e-05 17.7 0.0 1 1 1.3e-06 2.2e-05 17.0 0.0 4 89 2 86 1 144 0.86 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_38 - 247 AAA_22 PF13401.1 131 0.00011 14.7 3.9 1 1 1e-05 0.00017 14.1 1.2 4 85 98 187 92 200 0.57 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_20 - 723 PRK PF00485.13 194 5.9e-05 15.0 0.0 1 1 1.6e-06 0.0001 14.2 0.0 1 23 512 534 512 558 0.85 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 DNA_pol3_delta2 PF13177.1 162 4.7e-05 15.4 0.0 1 2 0.00022 0.015 7.3 0.0 18 49 97 128 79 141 0.80 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 DNA_pol3_delta2 PF13177.1 162 4.7e-05 15.4 0.0 2 2 0.00078 0.052 5.5 0.0 109 140 168 199 145 203 0.80 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 180 KAP_NTPase PF07693.9 325 0.0002 12.7 0.0 1 1 4.3e-06 0.00029 12.2 0.0 22 77 4 84 2 178 0.63 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 AAA_17 PF13207.1 121 8.5e-08 25.4 0.0 1 1 1.6e-08 3.5e-07 23.4 0.0 3 43 486 538 484 625 0.75 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 AAA_17 PF13207.1 121 1.4e-07 24.8 0.0 1 1 1.5e-08 3.3e-07 23.5 0.0 2 24 513 539 512 606 0.80 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 AAA_17 PF13207.1 121 5.3e-06 19.6 0.4 1 1 5.6e-07 1.2e-05 18.4 0.1 2 47 101 150 100 225 0.61 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_20 - 723 AAA_21 PF13304.1 303 4.5e-08 25.7 0.0 1 1 5.7e-06 0.00019 13.7 0.0 236 287 620 668 512 674 0.50 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 702 AAA_21 PF13304.1 303 2e-07 23.6 6.1 1 3 0.013 0.43 2.7 1.1 71 146 15 91 10 173 0.79 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_22 - 702 AAA_21 PF13304.1 303 2e-07 23.6 6.1 2 3 0.0002 0.0068 8.7 0.1 4 25 487 509 485 529 0.73 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_22 - 702 AAA_21 PF13304.1 303 2e-07 23.6 6.1 3 3 8.7e-06 0.00029 13.2 0.0 223 278 577 631 515 646 0.69 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_3 - 180 MobB PF03205.9 140 3.6e-05 15.9 0.1 1 1 4.3e-06 9.5e-05 14.5 0.0 2 39 4 40 3 46 0.85 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 MobB PF03205.9 140 6.1e-05 15.1 2.2 1 1 5.1e-06 0.00011 14.2 0.1 3 25 485 507 483 618 0.79 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 MobB PF03205.9 140 0.00043 12.4 0.0 1 1 4.1e-05 0.00091 11.3 0.0 3 28 513 538 511 548 0.81 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 192 ArsA_ATPase PF02374.10 305 1.5e-06 19.8 0.0 1 1 8.5e-08 2.9e-06 18.8 0.0 8 42 9 43 1 52 0.89 # 13934 # 14509 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_3 - 180 ArsA_ATPase PF02374.10 305 4.3e-06 18.3 0.0 1 2 1.3e-05 0.00045 11.6 0.0 3 39 4 40 2 62 0.89 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 ArsA_ATPase PF02374.10 305 4.3e-06 18.3 0.0 2 2 0.0014 0.046 5.0 0.1 222 252 131 163 67 177 0.82 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_38 - 247 PhoH PF02562.11 205 5.2e-08 24.7 0.1 1 1 1.9e-09 1.2e-07 23.4 0.1 7 51 81 130 75 184 0.77 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 T2SE PF00437.15 272 2e-07 22.4 0.0 1 1 5.2e-09 3.5e-07 21.7 0.0 114 150 65 120 8 130 0.69 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_22 - 702 SMC_N PF02463.14 220 9.4e-08 23.8 0.0 1 1 8.8e-09 2.9e-07 22.2 0.0 135 211 66 663 14 670 0.79 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 SMC_N PF02463.14 220 2.1e-07 22.7 0.4 1 2 0.0016 0.053 5.0 0.2 25 41 511 527 499 535 0.83 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_20 - 723 SMC_N PF02463.14 220 2.1e-07 22.7 0.4 2 2 9.3e-07 3.1e-05 15.6 0.0 136 211 620 691 538 699 0.84 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_3 - 180 VirC1 PF07015.6 231 6.5e-06 17.7 0.6 1 2 0.017 1.1 0.5 0.0 1 18 1 18 1 39 0.82 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 VirC1 PF07015.6 231 6.5e-06 17.7 0.6 2 2 5e-07 3.3e-05 15.3 0.1 83 127 56 106 38 119 0.81 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_14 - 192 Fer4_NifH PF00142.13 273 3.1e-06 18.8 0.0 1 1 9.4e-08 6.3e-06 17.8 0.0 7 45 9 47 2 75 0.83 # 13934 # 14509 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_3 - 180 Arch_ATPase PF01637.13 234 6.6e-05 15.0 0.0 1 1 2.1e-06 0.00014 13.9 0.0 28 95 10 88 1 178 0.76 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 AAA_16 PF13191.1 185 2.3e-09 29.8 0.4 1 1 2.9e-10 4.8e-09 28.8 0.4 24 174 482 635 474 646 0.65 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 AAA_16 PF13191.1 185 6.7e-07 21.8 2.2 1 1 8.7e-08 1.5e-06 20.7 0.7 18 160 504 648 495 665 0.53 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 AAA_16 PF13191.1 185 2.7e-06 19.8 1.7 1 1 2e-07 3.3e-06 19.5 0.2 24 104 98 167 55 229 0.70 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 180 AAA_16 PF13191.1 185 2.7e-05 16.5 0.5 1 1 4.9e-06 8.3e-05 15.0 0.5 25 88 3 68 2 178 0.64 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_38 - 247 AAA_23 PF13476.1 202 0.00075 12.2 0.5 1 1 1.1e-05 0.00075 12.2 0.5 21 35 100 114 88 126 0.85 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_22 - 702 AAA_18 PF13238.1 129 8.8e-07 21.6 0.2 1 1 3e-07 6.8e-06 18.8 0.0 3 47 487 557 486 586 0.72 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 AAA_18 PF13238.1 129 1e-06 21.5 0.0 1 1 9.7e-08 2.2e-06 20.4 0.0 1 25 513 541 513 595 0.78 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 AAA_18 PF13238.1 129 7.5e-06 18.6 0.1 1 1 4.8e-06 0.00011 14.9 0.0 1 79 101 198 101 207 0.54 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_14 - 192 CbiA PF01656.18 195 6.2e-15 47.4 0.1 1 1 4.1e-15 1.4e-13 43.0 0.1 1 41 4 44 4 156 0.87 # 13934 # 14509 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_3 - 180 CbiA PF01656.18 195 2.2e-13 42.4 0.1 1 2 2.9e-10 9.7e-09 27.2 0.0 1 48 4 51 4 75 0.86 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 CbiA PF01656.18 195 2.2e-13 42.4 0.1 2 2 2e-06 6.8e-05 14.7 0.1 95 183 57 152 45 171 0.73 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_38 - 247 KaiC PF06745.8 227 0.00015 13.3 0.0 1 1 4.1e-06 0.00028 12.4 0.0 8 46 86 125 51 142 0.86 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 AAA_14 PF13173.1 128 2.3e-06 19.9 0.3 1 1 8.8e-08 5.9e-06 18.6 0.0 2 73 98 171 97 239 0.76 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_20 - 723 AAA_29 PF13555.1 62 4e-06 18.7 0.0 1 1 4.9e-07 1.1e-05 17.3 0.0 24 51 511 538 501 542 0.80 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 702 AAA_29 PF13555.1 62 7.2e-05 14.7 0.1 1 1 8.1e-06 0.00018 13.4 0.1 17 39 477 498 471 511 0.80 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_38 - 247 AAA_29 PF13555.1 62 0.00013 13.9 0.0 1 1 1.5e-05 0.00035 12.5 0.0 22 39 97 114 82 131 0.83 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 AAA PF00004.24 132 1.5e-05 17.6 0.0 1 1 8.7e-07 2.9e-05 16.6 0.0 1 106 101 197 101 230 0.71 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_22 - 702 AAA PF00004.24 132 0.00041 12.9 0.2 1 1 0.00021 0.0072 8.9 0.2 3 74 487 626 485 664 0.64 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_38 - 247 Bac_DnaA PF00308.13 219 4.9e-05 15.3 0.0 1 1 1.3e-06 8.7e-05 14.5 0.0 33 136 97 198 76 203 0.86 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 Sigma54_activat PF00158.21 168 4e-05 15.5 0.3 1 1 4.2e-06 0.00028 12.7 0.3 17 56 93 132 77 192 0.65 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 180 MMR_HSR1 PF01926.18 116 4.1e-06 19.1 0.0 1 1 2.2e-07 7.4e-06 18.3 0.0 10 115 13 123 10 165 0.65 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 MMR_HSR1 PF01926.18 116 0.00089 11.6 1.0 1 2 0.086 2.9 0.3 0.1 23 57 44 81 26 129 0.67 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_22 - 702 MMR_HSR1 PF01926.18 116 0.00089 11.6 1.0 2 2 0.0002 0.0069 8.7 0.0 2 21 485 504 484 535 0.86 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_3 - 180 DUF258 PF03193.11 161 0.00012 13.7 0.0 1 1 1.6e-05 0.00037 12.1 0.0 36 60 3 27 1 80 0.81 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 DUF258 PF03193.11 161 0.00026 12.6 0.2 1 1 3.1e-05 0.0007 11.1 0.0 26 60 472 507 456 535 0.81 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 DUF258 PF03193.11 161 0.00033 12.2 0.0 1 1 2.8e-05 0.00063 11.3 0.0 23 59 497 534 483 546 0.78 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_14 - 192 AAA_31 PF13614.1 157 3e-07 22.8 0.0 1 1 1.7e-08 5.6e-07 21.9 0.0 1 41 2 42 2 59 0.88 # 13934 # 14509 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_3 - 180 AAA_31 PF13614.1 157 8.1e-05 14.9 0.0 1 1 3.5e-06 0.00012 14.4 0.0 1 99 2 99 2 113 0.85 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 NTPase_1 PF03266.10 168 0.00027 13.0 0.0 1 1 1e-05 0.0007 11.7 0.0 2 32 5 35 4 41 0.90 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 AAA_33 PF13671.1 143 0.00012 14.3 0.0 1 1 4.8e-06 0.00016 13.9 0.0 7 104 10 121 4 163 0.68 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 AAA_33 PF13671.1 143 0.00026 13.2 0.0 1 1 2.1e-05 0.0007 11.8 0.0 4 21 487 504 485 540 0.91 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_38 - 247 AAA_30 PF13604.1 196 6.4e-05 14.9 0.9 1 1 5.1e-05 0.0011 10.8 0.3 16 51 96 131 80 197 0.73 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_22 - 702 AAA_30 PF13604.1 196 0.00013 13.9 0.0 1 1 3e-05 0.00066 11.6 0.0 21 115 485 632 479 647 0.72 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 AAA_30 PF13604.1 196 0.00021 13.3 0.0 1 1 3.9e-05 0.00086 11.2 0.0 17 51 509 543 502 560 0.88 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 FtsK_SpoIIIE PF01580.13 205 5.1e-06 18.4 0.0 1 1 1.4e-07 9.2e-06 17.6 0.0 5 66 65 126 61 134 0.81 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 180 Dynamin_N PF00350.18 168 0.00024 13.3 0.3 1 2 0.026 1.7 0.7 0.1 10 19 14 23 11 30 0.86 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 Dynamin_N PF00350.18 168 0.00024 13.3 0.3 2 2 2.9e-05 0.002 10.3 0.0 95 165 51 123 33 125 0.82 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 ABC_tran PF00005.22 137 2.4e-39 127.1 1.7 1 1 1.1e-40 2.4e-39 127.1 0.2 2 137 473 621 472 621 0.87 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_20 - 723 ABC_tran PF00005.22 137 1.4e-34 111.7 0.0 1 1 1.7e-35 3.7e-34 110.3 0.0 1 137 500 649 500 649 0.87 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 ABC_tran PF00005.22 137 6.5e-05 15.6 0.4 1 1 7.1e-06 0.00016 14.3 0.0 8 45 95 132 91 237 0.75 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_20 - 723 AAA_19 PF13245.1 76 6.1e-05 15.1 0.2 1 1 7.6e-06 0.00026 13.1 0.0 12 46 512 542 501 569 0.82 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_38 - 247 AAA_19 PF13245.1 76 0.00014 14.0 0.0 1 1 1.1e-05 0.00036 12.7 0.0 10 35 99 123 93 139 0.79 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_22 - 702 AAA_10 PF12846.2 304 2.3e-05 16.2 0.1 1 2 1.8e-05 0.0004 12.2 0.1 6 24 487 505 483 515 0.84 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_22 - 702 AAA_10 PF12846.2 304 2.3e-05 16.2 0.1 2 2 0.034 0.76 1.4 0.0 216 243 606 632 579 656 0.76 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_3 - 180 AAA_10 PF12846.2 304 6.3e-05 14.8 0.0 1 1 4e-06 9e-05 14.3 0.0 5 56 6 63 3 143 0.76 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_20 - 723 AAA_10 PF12846.2 304 0.00018 13.3 0.1 1 1 2.5e-05 0.00057 11.7 0.0 5 32 514 541 510 554 0.77 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_20 - 723 SbcCD_C PF13558.1 90 0.00062 12.1 0.4 1 1 7.3e-05 0.0025 10.2 0.4 63 87 638 662 611 665 0.75 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_22 - 702 SbcCD_C PF13558.1 90 0.00071 11.9 0.7 1 1 0.00012 0.0041 9.4 0.7 33 82 593 629 571 634 0.73 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_38 - 247 ResIII PF04851.10 184 5.2e-06 18.7 0.7 1 1 1.5e-07 1e-05 17.8 0.7 22 46 73 119 14 138 0.73 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 DUF2075 PF09848.4 352 4.5e-05 14.8 0.5 1 2 0.066 4.4 -1.6 0.4 14 61 9 56 9 85 0.55 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 DUF2075 PF09848.4 352 4.5e-05 14.8 0.5 2 2 1.3e-06 9e-05 13.8 0.0 2 37 99 132 98 179 0.76 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 DEAD PF00270.24 169 0.00024 13.0 0.3 1 1 1.3e-05 0.00086 11.2 0.3 12 46 96 160 79 212 0.67 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 180 DUF815 PF05673.8 250 0.00027 12.2 0.6 1 2 9.4e-06 0.00063 11.0 0.2 56 79 5 28 2 62 0.90 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 DUF815 PF05673.8 250 0.00027 12.2 0.6 2 2 0.034 2.3 -0.6 0.0 67 129 69 137 43 153 0.56 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_38 - 247 Sigma54_activ_2 PF14532.1 138 1.6e-08 27.1 0.1 1 1 1.3e-09 4.4e-08 25.6 0.0 19 128 96 222 78 229 0.77 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 180 Sigma54_activ_2 PF14532.1 138 3.7e-05 16.1 0.0 1 2 6e-05 0.002 10.5 0.0 21 104 2 90 1 102 0.85 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 180 Sigma54_activ_2 PF14532.1 138 3.7e-05 16.1 0.0 2 2 0.0088 0.3 3.5 0.0 36 65 104 134 100 148 0.81 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_20 - 723 ArgK PF03308.11 267 5.1e-05 14.4 0.0 1 1 1.4e-06 9.5e-05 13.6 0.0 13 54 494 535 489 563 0.80 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_8 - 742 Plug PF07715.10 108 7.8e-19 60.4 3.8 1 1 2.9e-20 2e-18 59.1 3.8 11 108 42 147 34 147 0.95 # 8739 # 10964 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_38 - 247 NACHT PF05729.7 166 6.4e-05 15.0 1.0 1 1 3.8e-05 0.0025 9.8 1.0 3 28 101 126 99 204 0.85 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 AAA_25 PF13481.1 194 1.1e-05 17.2 0.0 1 1 1.1e-06 1.9e-05 16.5 0.0 23 60 88 125 68 169 0.87 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_20 - 723 AAA_25 PF13481.1 194 0.0002 13.1 0.0 1 1 5.3e-05 0.00089 11.0 0.0 30 50 507 527 492 607 0.91 # 18858 # 21026 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_3 - 180 AAA_25 PF13481.1 194 0.00026 12.8 0.0 1 1 2.4e-05 0.0004 12.2 0.0 34 108 3 92 1 121 0.75 # 826 # 1365 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.363 1_22 - 702 AAA_25 PF13481.1 194 0.00038 12.2 0.0 1 2 0.00083 0.014 7.1 0.0 31 50 480 499 459 536 0.85 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_22 - 702 AAA_25 PF13481.1 194 0.00038 12.2 0.0 2 2 0.018 0.3 2.7 0.0 140 189 608 665 551 667 0.72 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_38 - 247 AAA_28 PF13521.1 163 0.00031 13.1 0.0 1 1 9e-06 0.0006 12.1 0.0 1 44 100 147 100 182 0.69 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_38 - 247 AAA_5 PF07728.9 139 0.00021 13.4 0.1 1 1 1.7e-05 0.00059 11.9 0.1 1 93 100 189 100 198 0.75 # 48922 # 49662 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.478 1_22 - 702 AAA_5 PF07728.9 139 0.00042 12.4 0.0 1 1 5.5e-05 0.0018 10.3 0.0 4 27 487 513 485 568 0.65 # 22387 # 24492 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c2a7bbb0-f020-4fb9-9963-32d57471499d # Target file: checkm_output/bins/pGCA_002215135.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002215135.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c2a7bbb0-f020-4fb9-9963-32d57471499d checkm_output/bins/pGCA_002215135.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:18 2020 # [ok]