# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_82 - 374 UPF0020 PF01170.13 180 5.7e-06 19.9 0.0 1 1 1.8e-07 1.9e-05 18.3 0.0 32 155 46 159 31 177 0.77 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 2_35 - 531 UPF0020 PF01170.13 180 0.0011 12.5 0.0 1 1 3e-05 0.0031 11.0 0.0 31 122 220 309 201 315 0.77 # 34541 # 36133 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_138 - 127 KH_5 PF13184.1 69 2e-05 18.3 0.5 1 1 1.7e-07 3.5e-05 17.5 0.5 19 67 61 109 55 112 0.89 # 157196 # 157576 # 1 # ID=1_138;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_126 - 274 NmrA PF05368.8 233 1.3e-24 80.7 0.5 1 1 1.3e-25 2.8e-23 76.3 0.5 1 232 2 207 2 208 0.85 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 2_37 - 1053 AAA_22 PF13401.1 131 0.0015 12.6 3.9 1 2 3.2e-05 0.0067 10.5 0.6 49 111 363 438 284 455 0.64 # 37378 # 40536 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 2_37 - 1053 AAA_22 PF13401.1 131 0.0015 12.6 3.9 2 2 0.099 21 -0.8 0.0 37 87 487 539 461 544 0.69 # 37378 # 40536 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 2_2 - 372 ADH_zinc_N PF00107.21 130 7.5e-26 84.2 0.1 1 1 6.1e-28 1.3e-25 83.4 0.1 1 127 197 329 197 332 0.89 # 1232 # 2347 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.393 2_32 - 633 NAD_synthase PF02540.12 242 1.4e-05 18.0 0.0 1 1 1.1e-07 2.4e-05 17.3 0.0 2 83 238 319 237 373 0.81 # 30564 # 32462 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 1_152 - 175 AAA_4 PF04326.9 122 0.00048 14.2 0.1 1 1 3.3e-06 0.0007 13.7 0.1 13 83 47 120 36 160 0.66 # 166995 # 167519 # -1 # ID=1_152;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.326 1_126 - 274 Semialdhyde_dh PF01118.19 121 0.00024 15.3 0.0 1 1 2.3e-06 0.00047 14.4 0.0 2 46 2 45 1 95 0.83 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_86 - 561 Helicase_C PF00271.26 78 4.4e-05 17.3 0.0 1 1 4.5e-07 9.4e-05 16.2 0.0 16 78 285 347 270 347 0.86 # 87101 # 88783 # 1 # ID=1_86;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.379 1_1 - 669 Ras PF00071.17 162 0.0012 12.2 0.2 1 1 3.4e-05 0.0036 10.6 0.2 9 57 580 635 578 641 0.80 # 1 # 2007 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_48 - 794 Ras PF00071.17 162 0.0014 12.0 0.2 1 1 3.9e-05 0.004 10.5 0.2 9 57 705 760 703 766 0.81 # 51999 # 54380 # 1 # ID=2_48;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.369 1_33 - 500 AAA_26 PF13500.1 199 0.00072 13.1 0.0 1 1 1e-05 0.0021 11.6 0.0 1 34 226 259 226 343 0.86 # 30915 # 32414 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_131 - 299 F420_oxidored PF03807.12 96 0.00036 14.9 0.4 1 1 7.7e-06 0.0016 12.8 0.4 2 48 50 109 49 154 0.67 # 149430 # 150326 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.385 2_32 - 633 QueC PF06508.8 210 2.7e-06 20.7 0.0 1 1 2.7e-08 5.7e-06 19.7 0.0 5 59 262 316 260 326 0.90 # 30564 # 32462 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 1_131 - 299 adh_short PF00106.20 167 3.1e-05 17.9 0.1 1 1 4.9e-07 5.1e-05 17.2 0.1 7 54 53 103 48 120 0.74 # 149430 # 150326 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.385 1_126 - 274 adh_short PF00106.20 167 6.3e-05 16.9 0.0 1 1 2e-06 0.00021 15.2 0.0 3 34 2 32 1 39 0.77 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 Polysacc_synt_2 PF02719.10 294 7.8e-05 15.6 0.0 1 2 1.4e-06 0.0003 13.6 0.0 1 35 2 36 2 58 0.86 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 Polysacc_synt_2 PF02719.10 294 7.8e-05 15.6 0.0 2 2 0.051 11 -1.3 0.0 110 127 75 92 73 93 0.91 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_82 - 374 Methyltransf_25 PF13649.1 101 3.8e-06 21.2 0.1 1 1 6.7e-08 1.4e-05 19.4 0.0 3 73 48 113 46 163 0.82 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_39 - 436 PGK PF00162.14 384 0.00015 14.3 0.1 1 1 1.4e-06 0.0003 13.3 0.1 98 156 170 225 154 237 0.80 # 39244 # 40551 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_131 - 299 KR PF08659.5 181 0.001 12.7 0.0 1 1 1.4e-05 0.0015 12.1 0.0 8 55 54 105 48 126 0.75 # 149430 # 150326 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.385 1_126 - 274 KR PF08659.5 181 0.0025 11.4 0.0 1 1 4.5e-05 0.0046 10.5 0.0 3 25 2 24 1 43 0.82 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_68 - 591 PAPS_reduct PF01507.14 174 5.2e-08 26.8 0.0 1 1 1.1e-09 2.2e-07 24.8 0.0 3 153 23 220 21 225 0.74 # 65073 # 66845 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.373 2_38 - 163 Val_tRNA-synt_C PF10458.4 66 0.062 7.4 14.2 1 1 6.8e-05 0.014 9.5 9.5 2 28 89 115 88 149 0.89 # 41039 # 41527 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327 2_35 - 531 N6_Mtase PF02384.11 311 3.5e-119 391.4 0.1 1 1 5.8e-121 6.1e-119 390.6 0.1 2 309 169 476 168 478 0.98 # 34541 # 36133 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_82 - 374 N6_Mtase PF02384.11 311 8e-07 22.3 0.5 1 2 1.3e-07 1.3e-05 18.3 0.0 26 148 20 130 14 162 0.74 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_82 - 374 N6_Mtase PF02384.11 311 8e-07 22.3 0.5 2 2 0.024 2.5 1.0 0.1 224 276 190 244 176 269 0.76 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_42 - 1167 TraG-D_C PF12696.2 128 3.6e-13 43.4 1.6 1 1 2.7e-15 5.7e-13 42.8 0.0 3 125 539 659 538 661 0.85 # 42870 # 46370 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 2_32 - 633 Asn_synthase PF00733.16 255 6.8e-81 265.4 0.0 1 1 4.8e-83 9.9e-81 264.9 0.0 2 255 241 544 240 544 0.97 # 30564 # 32462 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 1_33 - 500 AAA_31 PF13614.1 157 2.4e-06 21.5 0.1 1 1 2.5e-08 5.3e-06 20.4 0.1 1 152 226 381 226 386 0.79 # 30915 # 32414 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_82 - 374 Methyltransf_26 PF13659.1 117 2.8e-15 50.3 0.0 1 1 6.6e-17 6.8e-15 49.1 0.0 4 116 46 154 44 155 0.88 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 2_35 - 531 Methyltransf_26 PF13659.1 117 2.3e-12 40.9 0.0 1 1 7.6e-14 7.9e-12 39.2 0.0 3 116 220 354 219 355 0.81 # 34541 # 36133 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_131 - 299 2-Hacid_dh_C PF02826.14 178 3e-07 23.7 0.9 1 2 2e-08 4.1e-06 20.0 0.4 22 63 29 74 13 106 0.76 # 149430 # 150326 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.385 1_131 - 299 2-Hacid_dh_C PF02826.14 178 3e-07 23.7 0.9 2 2 0.0066 1.4 2.0 0.0 65 96 111 142 98 149 0.78 # 149430 # 150326 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.385 1_131 - 299 ApbA PF02558.11 151 0.0035 10.7 0.7 1 1 3.5e-05 0.0073 9.7 0.7 1 45 50 97 50 142 0.62 # 149430 # 150326 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.385 1_82 - 374 MTS PF05175.9 170 6.9e-10 32.5 0.0 1 1 1.1e-11 1.2e-09 31.7 0.0 23 141 32 154 17 177 0.77 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 2_35 - 531 MTS PF05175.9 170 0.00047 13.5 0.0 1 1 1e-05 0.0011 12.3 0.0 41 140 227 353 205 364 0.75 # 34541 # 36133 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_19 - 988 tRNA-synt_1f PF01921.13 360 0.0014 11.2 1.9 1 2 3e-05 0.0063 9.1 0.6 80 165 71 153 67 195 0.71 # 17097 # 20060 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.364 1_19 - 988 tRNA-synt_1f PF01921.13 360 0.0014 11.2 1.9 2 2 0.014 2.9 0.3 0.0 10 72 805 865 800 890 0.75 # 17097 # 20060 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.364 1_97 - 215 DNA_mis_repair PF01119.14 119 0.0016 11.9 0.0 1 2 3.1e-05 0.0065 9.9 0.0 78 101 71 93 50 105 0.78 # 99476 # 100120 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.372 1_97 - 215 DNA_mis_repair PF01119.14 119 0.0016 11.9 0.0 2 2 0.088 18 -1.2 0.0 8 36 175 208 169 213 0.68 # 99476 # 100120 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.372 1_82 - 374 Cons_hypoth95 PF03602.10 183 0.0015 11.9 0.0 1 1 1.4e-05 0.003 10.9 0.0 94 141 90 134 36 147 0.76 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 2_35 - 531 Eco57I PF07669.6 106 9.7e-07 23.1 0.1 1 1 3.2e-08 6.6e-06 20.4 0.0 2 104 293 404 292 406 0.90 # 34541 # 36133 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_126 - 274 NAD_binding_4 PF07993.7 249 0.00079 12.3 0.0 1 2 1.2e-05 0.0026 10.6 0.1 1 30 4 31 4 38 0.77 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 NAD_binding_4 PF07993.7 249 0.00079 12.3 0.0 2 2 0.082 17 -1.9 0.0 181 200 109 128 106 157 0.75 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 RmlD_sub_bind PF04321.12 287 4.3e-08 26.3 0.0 1 2 2.7e-07 5.6e-05 16.0 0.0 3 48 2 53 1 61 0.87 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 RmlD_sub_bind PF04321.12 287 4.3e-08 26.3 0.0 2 2 6.4e-05 0.013 8.2 0.0 185 233 157 202 143 220 0.87 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 NAD_binding_10 PF13460.1 183 5.1e-25 82.4 0.0 1 1 3.8e-27 7.8e-25 81.8 0.0 1 181 2 169 2 171 0.87 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_42 - 1167 AAA_10 PF12846.2 304 1.6e-10 34.8 0.1 1 1 2.1e-12 4.3e-10 33.4 0.1 3 267 220 578 218 600 0.68 # 42870 # 46370 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 1_126 - 274 3Beta_HSD PF01073.14 280 0.00016 14.4 0.0 1 2 2.1e-05 0.0043 9.7 0.0 1 21 3 23 3 47 0.84 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 3Beta_HSD PF01073.14 280 0.00016 14.4 0.0 2 2 0.0035 0.74 2.3 0.0 97 119 74 96 73 119 0.84 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_131 - 299 ThiF PF00899.16 136 7.3e-35 113.7 0.0 1 1 1e-36 1.1e-34 113.2 0.0 2 117 47 164 46 185 0.90 # 149430 # 150326 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.385 1_64 - 283 ThiF PF00899.16 136 2.2e-15 50.6 0.0 1 1 3.7e-17 3.8e-15 49.8 0.0 4 116 16 148 15 164 0.78 # 62901 # 63749 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.370 2_37 - 1053 ResIII PF04851.10 184 4.6e-38 124.8 0.4 1 1 4.5e-40 4.6e-38 124.8 0.4 2 183 267 452 266 453 0.94 # 37378 # 40536 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_84 - 560 ResIII PF04851.10 184 0.00084 13.1 3.4 1 2 0.0033 0.34 4.6 0.0 4 70 262 332 259 409 0.71 # 82861 # 84540 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_84 - 560 ResIII PF04851.10 184 0.00084 13.1 3.4 2 2 0.00025 0.026 8.3 0.1 137 157 511 549 421 553 0.71 # 82861 # 84540 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_82 - 374 Methyltransf_31 PF13847.1 152 3.7e-06 20.5 0.0 1 1 2.9e-08 6e-06 19.8 0.0 7 111 46 154 40 191 0.79 # 81425 # 82546 # 1 # ID=1_82;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.365 2_2 - 372 FtsJ PF01728.14 181 0.00066 13.6 0.0 1 1 5.6e-06 0.0012 12.8 0.0 40 134 205 362 177 370 0.87 # 1232 # 2347 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.393 1_155 - 118 SPOUT_MTase PF02590.12 155 0.00055 13.6 0.0 1 1 3.6e-06 0.00075 13.2 0.0 16 78 5 69 1 74 0.81 # 169903 # 170256 # -1 # ID=1_155;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.342 1_126 - 274 Epimerase PF01370.16 236 3.4e-07 23.8 0.0 1 3 5.9e-08 1.2e-05 18.7 0.0 1 35 2 35 2 56 0.78 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 Epimerase PF01370.16 236 3.4e-07 23.8 0.0 2 3 0.084 17 -1.4 0.0 97 115 74 92 68 93 0.90 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_126 - 274 Epimerase PF01370.16 236 3.4e-07 23.8 0.0 3 3 0.0093 1.9 1.7 0.0 193 224 139 170 113 181 0.80 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 2_37 - 1053 DEAD PF00270.24 169 3.3e-10 33.6 0.0 1 1 9.7e-12 1e-09 32.0 0.0 15 167 288 456 270 458 0.67 # 37378 # 40536 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.367 1_42 - 1167 DEAD PF00270.24 169 5.5e-05 16.6 0.1 1 1 2.2e-06 0.00023 14.6 0.0 16 70 220 299 204 348 0.77 # 42870 # 46370 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 1_42 - 1167 TrwB_AAD_bind PF10412.4 386 1.9e-10 33.8 0.3 1 2 0.0079 1.6 1.1 0.0 7 32 210 235 206 245 0.80 # 42870 # 46370 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 1_42 - 1167 TrwB_AAD_bind PF10412.4 386 1.9e-10 33.8 0.3 2 2 2.2e-11 4.6e-09 29.2 0.0 169 383 465 678 449 680 0.74 # 42870 # 46370 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.343 1_35 - 379 AAA_11 PF13086.1 236 0.0087 9.5 6.0 1 1 0.00012 0.012 9.0 5.7 87 183 156 252 136 297 0.73 # 34097 # 35233 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.329 2_20 - 127 AAA_11 PF13086.1 236 0.016 8.7 11.6 1 1 0.00017 0.018 8.5 11.6 62 165 21 124 8 126 0.60 # 20725 # 21105 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.378 1_126 - 274 DapB_N PF01113.15 124 0.00012 15.9 0.0 1 1 1.2e-06 0.00026 14.9 0.0 3 40 2 38 1 97 0.83 # 144905 # 145726 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 1_132 - 317 TIGR00460 TIGR00460 315 1.2e-43 142.9 0.1 1 1 7.3e-46 1.5e-43 142.7 0.1 8 287 15 293 6 307 0.91 # 150323 # 151273 # 1 # ID=1_132;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.323 1_111 - 616 TrkA_N PF02254.13 116 0.00032 14.7 0.0 1 1 2e-05 0.0021 12.0 0.0 23 77 34 90 26 95 0.89 # 111514 # 113361 # -1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 2_2 - 372 TrkA_N PF02254.13 116 0.00039 14.4 0.0 1 1 7.6e-06 0.00079 13.4 0.0 2 42 191 233 190 245 0.83 # 1232 # 2347 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.393 2_39 - 542 EFG_IV PF03764.13 120 0.0013 12.2 0.1 1 1 1.7e-05 0.0034 10.9 0.0 24 71 487 534 477 537 0.85 # 41563 # 43188 # -1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 1_44 - 328 S1 PF00575.18 74 0.00018 15.6 3.9 1 3 0.047 9.8 0.4 0.0 20 40 82 102 77 129 0.82 # 48155 # 49138 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_44 - 328 S1 PF00575.18 74 0.00018 15.6 3.9 2 3 5.8e-05 0.012 9.7 0.4 5 68 156 218 152 221 0.89 # 48155 # 49138 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_44 - 328 S1 PF00575.18 74 0.00018 15.6 3.9 3 3 0.003 0.62 4.2 0.4 6 27 244 266 240 269 0.88 # 48155 # 49138 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_23 - 131 Terminase_GpA PF05876.7 557 0.00077 11.8 0.1 1 1 4.2e-06 0.00088 11.6 0.1 455 541 34 119 23 128 0.81 # 21642 # 22034 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.336 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fcc6df51-6776-447f-b301-7c5ec154dbb8 # Target file: checkm_output/bins/pGCA_002214725.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002214725.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fcc6df51-6776-447f-b301-7c5ec154dbb8 checkm_output/bins/pGCA_002214725.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:15 2020 # [ok]