# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 858 IstB_IS21 PF01695.12 178 0.00023 12.7 0.0 1 1 8.3e-06 0.00047 11.7 0.0 48 78 457 487 454 500 0.89 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_40 - 335 MipZ PF09140.6 261 1.4e-09 29.5 0.0 1 2 9.5e-09 5.4e-07 21.0 0.0 2 40 74 112 73 130 0.90 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_40 - 335 MipZ PF09140.6 261 1.4e-09 29.5 0.0 2 2 0.00027 0.016 6.4 0.0 76 124 169 217 151 234 0.81 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_40 - 335 YhjQ PF06564.7 244 2.6e-11 35.4 0.0 1 1 1.2e-12 7e-11 34.0 0.0 3 221 74 309 72 313 0.73 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_3 - 858 DUF87 PF01935.12 229 1.7e-07 23.4 0.0 1 1 1.3e-08 3.7e-07 22.3 0.0 26 153 459 598 458 661 0.76 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 693 DUF87 PF01935.12 229 0.00058 11.8 0.0 1 1 2e-05 0.00058 11.8 0.0 24 46 194 216 185 228 0.88 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 1926 AAA_22 PF13401.1 131 1.6e-05 17.2 1.2 1 2 0.0023 0.066 5.5 0.3 50 120 464 567 422 570 0.62 # 22308 # 28085 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_24 - 1926 AAA_22 PF13401.1 131 1.6e-05 17.2 1.2 2 2 0.00025 0.0071 8.6 0.0 4 68 1032 1106 1028 1201 0.79 # 22308 # 28085 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_23 - 693 AAA_22 PF13401.1 131 0.00023 13.4 0.0 1 1 2.2e-05 0.00062 12.0 0.0 5 29 194 218 189 244 0.83 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 858 KAP_NTPase PF07693.9 325 0.00036 11.6 0.0 1 1 1.3e-05 0.00075 10.6 0.0 20 85 456 603 449 620 0.91 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 858 AAA_17 PF13207.1 121 0.00026 14.0 0.0 1 1 1e-05 0.00057 12.8 0.0 2 32 459 494 458 610 0.70 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 693 MobB PF03205.9 140 0.00036 12.4 0.1 1 1 1.5e-05 0.00085 11.2 0.1 5 34 198 227 195 235 0.88 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_40 - 335 ArsA_ATPase PF02374.10 305 2.1e-12 38.8 0.6 1 1 3.5e-13 2e-11 35.5 0.4 9 137 81 202 72 214 0.65 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_40 - 335 VirC1 PF07015.6 231 0.00017 12.8 0.4 1 2 0.0001 0.006 7.7 0.1 2 41 73 112 72 122 0.86 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_40 - 335 VirC1 PF07015.6 231 0.00017 12.8 0.4 2 2 0.0026 0.15 3.2 0.0 83 133 191 244 173 275 0.82 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_40 - 335 Fer4_NifH PF00142.13 273 1.1e-05 16.8 0.0 1 1 4.2e-07 2.4e-05 15.7 0.0 7 41 80 114 73 129 0.86 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_40 - 335 CbiA PF01656.18 195 1.9e-33 107.6 0.0 1 1 4.8e-35 2.7e-33 107.1 0.0 1 195 75 295 75 295 0.85 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_23 - 693 TraG-D_C PF12696.2 128 7.3e-23 73.0 0.0 1 1 3.6e-24 2e-22 71.5 0.0 1 127 431 553 431 554 0.87 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_40 - 335 AAA_31 PF13614.1 157 3e-12 38.8 0.1 1 1 3.4e-13 2e-11 36.2 0.0 1 154 73 227 73 229 0.83 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_24 - 1926 AAA_30 PF13604.1 196 4.1e-57 185.0 8.8 1 2 4.5e-11 2.5e-09 29.0 0.7 3 127 439 569 437 573 0.88 # 22308 # 28085 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_24 - 1926 AAA_30 PF13604.1 196 4.1e-57 185.0 8.8 2 2 8.5e-51 4.9e-49 158.7 1.9 1 190 1015 1209 1015 1215 0.95 # 22308 # 28085 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_23 - 693 FtsK_SpoIIIE PF01580.13 205 1.1e-05 17.1 0.1 1 1 7.7e-07 2.2e-05 16.1 0.1 6 59 163 214 158 217 0.76 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 858 FtsK_SpoIIIE PF01580.13 205 1.6e-05 16.5 0.0 1 1 1.4e-06 3.9e-05 15.3 0.0 23 63 437 481 427 497 0.84 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 858 ABC_tran PF00005.22 137 0.00022 13.7 0.0 1 1 8.3e-06 0.00047 12.6 0.0 14 77 459 522 455 609 0.72 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_24 - 1926 AAA_19 PF13245.1 76 1.4e-06 20.1 0.2 1 1 2.5e-08 1.4e-06 20.1 0.2 8 76 1028 1097 1022 1097 0.80 # 22308 # 28085 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_3 - 858 AAA_10 PF12846.2 304 6.1e-49 159.1 0.0 1 1 3.3e-50 9.4e-49 158.5 0.0 1 290 456 747 456 754 0.93 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 693 AAA_10 PF12846.2 304 3.7e-14 44.9 0.4 1 1 1.7e-14 4.7e-13 41.3 0.0 3 296 195 505 194 513 0.67 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_40 - 335 ResIII PF04851.10 184 1.3e-06 20.4 0.0 1 1 3.8e-08 2.1e-06 19.7 0.0 28 153 76 198 54 200 0.76 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_23 - 693 TrwB_AAD_bind PF10412.4 386 8.3e-151 494.0 0.0 1 1 4.1e-152 1.2e-150 493.5 0.0 5 385 182 572 178 573 0.98 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 858 TrwB_AAD_bind PF10412.4 386 9.5e-05 13.2 0.0 1 1 5.6e-06 0.00016 12.4 0.0 16 72 457 519 449 524 0.84 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_40 - 335 ParA PF10609.4 81 1e-05 17.5 0.2 1 1 4.4e-07 2.5e-05 16.3 0.0 2 55 193 244 192 271 0.79 # 43280 # 44284 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.415 1_23 - 693 T4SS-DNA_transf PF02534.9 469 3.4e-16 50.9 0.3 1 3 0.0071 0.4 1.2 0.1 16 68 162 215 142 229 0.61 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 693 T4SS-DNA_transf PF02534.9 469 3.4e-16 50.9 0.3 2 3 2.6e-16 1.5e-14 45.5 0.0 98 426 233 554 227 562 0.78 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 693 T4SS-DNA_transf PF02534.9 469 3.4e-16 50.9 0.3 3 3 0.059 3.4 -1.9 0.4 151 217 618 683 585 689 0.68 # 20045 # 22123 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 858 Pox_A32 PF04665.7 241 0.00056 11.3 0.0 1 1 1.9e-05 0.0011 10.4 0.0 12 49 455 492 447 513 0.84 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 858 AAA_25 PF13481.1 194 4.9e-06 18.2 0.0 1 1 5e-07 2.8e-05 15.7 0.0 36 86 459 499 455 549 0.73 # 1314 # 3887 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/16cfabc1-70c1-4de9-968e-b39b836c0864 # Target file: checkm_output/bins/pGCA_002214345.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002214345.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/16cfabc1-70c1-4de9-968e-b39b836c0864 checkm_output/bins/pGCA_002214345.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:13 2020 # [ok]