# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_12 - 227 Mg_chelatase PF01078.16 207 5.5e-05 14.8 0.0 1 1 1.4e-06 9.9e-05 14.0 0.0 21 78 34 91 15 97 0.84 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 cobW PF02492.14 178 6.2e-05 14.9 0.5 1 1 2.3e-06 0.00017 13.5 0.2 2 22 33 53 32 67 0.82 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 ABC_ATPase PF09818.4 448 2.9e-06 18.5 0.3 1 2 0.0018 0.13 3.1 0.1 241 266 51 77 40 85 0.88 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 ABC_ATPase PF09818.4 448 2.9e-06 18.5 0.3 2 2 1.8e-06 0.00013 13.1 0.0 322 372 165 214 158 254 0.82 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_12 - 227 Rad17 PF03215.10 519 0.00021 12.4 0.0 1 1 3.7e-06 0.00027 12.1 0.0 33 70 23 60 13 140 0.80 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 IstB_IS21 PF01695.12 178 2.8e-06 19.3 0.2 1 2 1.4e-05 0.00049 12.0 0.0 52 76 36 61 29 101 0.84 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 IstB_IS21 PF01695.12 178 2.8e-06 19.3 0.2 2 2 0.0015 0.054 5.3 0.0 99 148 143 192 120 199 0.79 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 IstB_IS21 PF01695.12 178 0.00023 13.1 0.0 1 2 8.8e-05 0.0032 9.3 0.0 45 69 33 57 5 113 0.75 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_12 - 227 IstB_IS21 PF01695.12 178 0.00023 13.1 0.0 2 2 0.019 0.67 1.7 0.0 111 156 165 212 134 219 0.71 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 262 MipZ PF09140.6 261 1.7e-08 26.3 0.0 1 1 2.6e-08 1.9e-06 19.6 0.0 3 125 5 149 3 155 0.56 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 262 YhjQ PF06564.7 244 3.7e-11 35.2 0.0 1 1 7.7e-13 5.5e-11 34.7 0.0 5 153 6 158 2 164 0.77 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_22 - 248 NB-ARC PF00931.17 287 0.00027 12.3 0.3 1 2 1e-05 0.00072 10.9 0.1 19 45 31 57 16 77 0.82 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 NB-ARC PF00931.17 287 0.00027 12.3 0.3 2 2 0.045 3.2 -1.1 0.0 124 137 179 192 104 221 0.64 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 AAA_22 PF13401.1 131 1.4e-06 20.9 0.3 1 2 9e-05 0.0016 11.0 0.0 4 26 55 77 52 119 0.87 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 AAA_22 PF13401.1 131 1.4e-06 20.9 0.3 2 2 0.0047 0.084 5.5 0.1 79 124 176 224 121 231 0.83 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 AAA_22 PF13401.1 131 1.9e-05 17.3 0.5 1 1 8.9e-06 0.00016 14.3 0.5 9 28 36 55 30 207 0.78 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_22 PF13401.1 131 0.00011 14.8 0.9 1 1 2.9e-05 0.00052 12.6 0.2 6 22 37 53 32 63 0.87 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 262 AAA_22 PF13401.1 131 0.00052 12.6 0.0 1 1 4.8e-05 0.00086 11.9 0.0 14 83 13 84 6 129 0.87 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 262 ATP_bind_1 PF03029.12 238 5.9e-05 15.1 0.1 1 2 4.1e-05 0.0029 9.5 0.0 6 35 13 42 7 50 0.91 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 262 ATP_bind_1 PF03029.12 238 5.9e-05 15.1 0.1 2 2 0.0028 0.2 3.5 0.0 83 143 116 167 99 185 0.73 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 262 SRP54 PF00448.17 196 0.00026 12.9 0.1 1 1 1.1e-05 0.00078 11.3 0.0 11 38 13 40 6 48 0.92 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_12 - 227 AAA_15 PF13175.1 415 5.1e-07 21.4 0.0 1 2 1.3e-05 0.0003 12.3 0.0 23 43 36 66 3 146 0.70 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_12 - 227 AAA_15 PF13175.1 415 5.1e-07 21.4 0.0 2 2 0.00037 0.0089 7.4 0.0 372 411 165 204 150 207 0.90 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 AAA_15 PF13175.1 415 1.9e-06 19.5 0.9 1 2 3.8e-05 0.00091 10.7 0.3 3 49 5 82 3 112 0.63 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 AAA_15 PF13175.1 415 1.9e-06 19.5 0.9 2 2 0.00039 0.0094 7.4 0.0 371 407 184 221 165 227 0.87 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 AAA_15 PF13175.1 415 3.2e-06 18.8 0.0 1 2 0.00019 0.0047 8.4 0.0 25 43 33 58 11 100 0.77 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 AAA_15 PF13175.1 415 3.2e-06 18.8 0.0 2 2 0.00017 0.004 8.6 0.0 372 410 155 192 147 194 0.92 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 AAA_17 PF13207.1 121 1.8e-05 18.0 0.1 1 1 7e-06 0.00017 14.9 0.0 3 43 59 97 57 150 0.70 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 AAA_17 PF13207.1 121 1.9e-05 17.9 0.0 1 1 1.6e-06 3.7e-05 17.0 0.0 1 32 33 61 33 125 0.79 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_17 PF13207.1 121 2.4e-05 17.6 0.9 1 1 1.5e-06 3.6e-05 17.0 0.9 3 20 39 56 37 217 0.85 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 AAA_21 PF13304.1 303 9.7e-19 60.8 0.1 1 2 1.2e-06 2.8e-05 16.6 0.0 3 22 35 54 33 71 0.87 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 AAA_21 PF13304.1 303 9.7e-19 60.8 0.1 2 2 1.5e-14 3.6e-13 42.5 0.0 179 297 122 192 84 193 0.81 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_21 PF13304.1 303 1.7e-17 56.6 0.0 1 1 1.6e-16 3.7e-15 49.0 0.0 2 300 38 206 37 207 0.74 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 AAA_21 PF13304.1 303 5.7e-10 32.0 0.3 1 2 8.4e-06 0.0002 13.8 0.2 2 40 58 94 57 125 0.70 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 AAA_21 PF13304.1 303 5.7e-10 32.0 0.3 2 2 1.3e-06 3.2e-05 16.4 0.0 220 285 149 211 96 227 0.78 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 Miro PF08477.8 119 3.1e-05 16.9 0.0 1 2 2.5e-06 0.00018 14.5 0.0 4 29 36 61 34 97 0.81 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 Miro PF08477.8 119 3.1e-05 16.9 0.0 2 2 0.085 6.1 -0.2 0.0 8 25 181 198 180 239 0.74 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 MobB PF03205.9 140 2.9e-05 16.2 0.3 1 2 4.8e-06 0.00017 13.7 0.2 2 22 33 53 32 69 0.83 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 MobB PF03205.9 140 2.9e-05 16.2 0.3 2 2 0.095 3.4 -0.2 0.0 9 19 181 191 180 229 0.81 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 MobB PF03205.9 140 0.00034 12.8 0.6 1 1 3.1e-05 0.0011 11.1 0.1 4 20 39 55 36 58 0.88 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 262 ArsA_ATPase PF02374.10 305 2.2e-11 35.8 0.0 1 1 5.6e-13 4e-11 34.9 0.0 9 137 11 133 2 137 0.83 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_32 - 399 G-alpha PF00503.15 389 0.00054 11.1 0.0 1 1 1.2e-05 0.00089 10.4 0.0 62 87 59 84 31 131 0.84 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_12 - 227 SMC_N PF02463.14 220 4.8e-11 34.7 0.4 1 1 1.7e-11 4e-10 31.7 0.4 25 212 36 218 22 224 0.76 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 SMC_N PF02463.14 220 4.6e-05 15.2 0.2 1 1 1.8e-05 0.00043 12.0 0.2 27 210 34 205 13 211 0.69 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 SMC_N PF02463.14 220 8.9e-05 14.2 4.7 1 1 8.5e-06 0.0002 13.0 2.3 26 197 57 222 46 244 0.78 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_2 - 262 VirC1 PF07015.6 231 9.6e-06 17.2 0.1 1 2 1.1e-05 0.0008 10.9 0.0 4 38 5 39 2 50 0.78 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 262 VirC1 PF07015.6 231 9.6e-06 17.2 0.1 2 2 0.0013 0.093 4.2 0.0 69 111 108 151 96 172 0.73 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 262 Fer4_NifH PF00142.13 273 1.9e-05 16.3 0.0 1 1 4.6e-07 3.3e-05 15.6 0.0 8 48 11 51 5 80 0.83 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_32 - 399 Arch_ATPase PF01637.13 234 0.00017 13.7 0.6 1 2 0.00042 0.015 7.4 0.0 20 42 55 77 49 105 0.84 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 Arch_ATPase PF01637.13 234 0.00017 13.7 0.6 2 2 0.0068 0.24 3.4 0.0 121 163 186 223 173 226 0.86 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_12 - 227 Arch_ATPase PF01637.13 234 0.0003 12.9 0.3 1 1 3e-05 0.0011 11.1 0.2 20 42 35 56 22 219 0.62 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_12 - 227 AAA_16 PF13191.1 185 2.1e-05 17.0 1.8 1 1 1.9e-06 4.6e-05 15.9 1.8 23 45 34 55 17 205 0.79 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 AAA_16 PF13191.1 185 4.3e-05 16.0 0.2 1 1 4.7e-06 0.00011 14.6 0.2 22 50 53 81 46 222 0.92 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 AAA_16 PF13191.1 185 6.6e-05 15.4 0.4 1 1 9.6e-06 0.00023 13.6 0.4 29 45 36 52 17 222 0.63 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_23 PF13476.1 202 3.5e-06 19.9 0.5 1 1 2.1e-07 5.1e-06 19.4 0.5 11 39 26 55 19 212 0.77 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 AAA_23 PF13476.1 202 1.3e-05 18.0 0.0 1 1 1.4e-06 3.3e-05 16.7 0.0 18 40 54 76 40 126 0.87 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 AAA_23 PF13476.1 202 0.00019 14.3 0.1 1 1 1.2e-05 0.00029 13.6 0.1 21 40 33 52 13 54 0.79 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 AAA_18 PF13238.1 129 1.2e-06 21.4 0.2 1 2 2.7e-05 0.00097 11.9 0.0 2 42 59 103 59 136 0.75 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 AAA_18 PF13238.1 129 1.2e-06 21.4 0.2 2 2 0.00087 0.031 7.0 0.1 46 94 191 237 175 269 0.85 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_12 - 227 AAA_18 PF13238.1 129 1.5e-06 21.0 1.3 1 1 3.6e-06 0.00013 14.7 1.3 2 38 39 85 39 218 0.64 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_12 - 227 AAA_13 PF13166.1 712 0.00051 11.0 0.0 1 2 0.00018 0.013 6.3 0.0 16 40 35 59 22 85 0.84 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_12 - 227 AAA_13 PF13166.1 712 0.00051 11.0 0.0 2 2 0.0023 0.17 2.6 0.0 527 570 162 204 154 216 0.89 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 262 CbiA PF01656.18 195 5.6e-35 112.9 0.0 1 1 9.7e-37 6.9e-35 112.6 0.0 1 179 5 209 5 225 0.80 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_12 - 227 AAA_14 PF13173.1 128 0.0003 13.2 0.0 1 1 1.9e-05 0.00069 12.0 0.0 3 48 36 81 34 132 0.75 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 AAA_14 PF13173.1 128 0.00049 12.5 0.1 1 1 0.00013 0.0047 9.3 0.0 3 24 32 53 30 108 0.86 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_29 PF13555.1 62 9.8e-08 24.0 0.4 1 1 7e-09 1.7e-07 23.2 0.4 18 40 31 52 23 70 0.79 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 AAA_29 PF13555.1 62 1e-05 17.5 0.1 1 1 9.8e-07 2.4e-05 16.3 0.1 16 41 49 73 44 85 0.78 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 AAA_29 PF13555.1 62 4.2e-05 15.5 0.1 1 1 4.6e-06 0.00011 14.2 0.1 23 43 31 51 20 53 0.80 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA PF00004.24 132 3.2e-05 16.6 0.2 1 2 0.0006 0.022 7.4 0.0 2 22 39 59 38 96 0.71 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_12 - 227 AAA PF00004.24 132 3.2e-05 16.6 0.2 2 2 0.00059 0.021 7.5 0.0 31 107 134 201 103 220 0.81 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 AAA PF00004.24 132 0.00011 14.8 0.4 1 1 7.2e-06 0.00026 13.7 0.4 3 22 36 55 34 199 0.85 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 MMR_HSR1 PF01926.18 116 3.7e-05 16.2 0.2 1 1 2.4e-06 8.7e-05 14.9 0.2 3 54 35 117 33 208 0.55 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 MMR_HSR1 PF01926.18 116 0.0008 11.8 0.9 1 1 7.9e-05 0.0029 10.1 0.3 2 20 58 76 57 222 0.83 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_12 - 227 DUF258 PF03193.11 161 2.5e-06 19.2 0.1 1 1 1.7e-07 4.2e-06 18.5 0.1 25 60 24 60 4 94 0.76 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 DUF258 PF03193.11 161 4e-06 18.5 0.0 1 1 2.9e-07 7.1e-06 17.7 0.0 22 67 17 63 4 79 0.81 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 DUF258 PF03193.11 161 9.3e-06 17.4 0.3 1 1 1.1e-06 2.6e-05 15.9 0.2 23 66 42 86 22 107 0.75 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_2 - 262 AAA_31 PF13614.1 157 5.2e-16 51.4 0.1 1 1 1.1e-17 7.8e-16 50.8 0.1 8 153 10 157 3 161 0.80 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_22 - 248 NTPase_1 PF03266.10 168 0.00021 13.4 0.2 1 2 5.9e-05 0.0042 9.2 0.1 4 21 36 53 34 74 0.80 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 NTPase_1 PF03266.10 168 0.00021 13.4 0.2 2 2 0.01 0.73 1.9 0.0 94 136 151 195 122 209 0.77 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 AAA_33 PF13671.1 143 2e-05 17.0 0.0 1 1 2.6e-06 6.2e-05 15.4 0.0 4 33 36 62 34 118 0.71 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_33 PF13671.1 143 4.3e-05 15.9 0.0 1 1 3.2e-06 7.7e-05 15.1 0.0 3 39 39 79 37 135 0.72 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 AAA_33 PF13671.1 143 0.00026 13.3 0.0 1 1 2.5e-05 0.0006 12.1 0.0 1 19 57 75 57 115 0.89 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 AAA_30 PF13604.1 196 6.7e-05 15.0 0.0 1 1 3.4e-06 0.00025 13.1 0.0 15 48 52 85 46 104 0.77 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_12 - 227 ABC_tran PF00005.22 137 2.7e-36 117.4 0.0 1 1 1.6e-37 3.8e-36 116.8 0.0 1 137 25 173 25 173 0.94 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 ABC_tran PF00005.22 137 6.5e-34 109.6 0.0 1 1 5.1e-35 1.2e-33 108.7 0.0 2 136 46 193 45 194 0.93 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 ABC_tran PF00005.22 137 4.8e-31 100.3 0.0 1 1 3e-32 7.2e-31 99.8 0.0 1 136 21 162 21 163 0.90 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 TIGR03263 TIGR03263 180 0.00019 13.2 0.0 1 1 5.6e-06 0.00041 12.2 0.0 5 23 35 53 31 97 0.83 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 399 AAA_19 PF13245.1 76 0.00012 14.3 0.0 1 1 4.4e-06 0.00032 12.9 0.0 9 37 54 81 47 99 0.84 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 AAA_10 PF12846.2 304 2.9e-05 16.0 0.1 1 1 3e-06 7.2e-05 14.7 0.0 6 37 36 67 34 129 0.86 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_10 PF12846.2 304 0.00015 13.7 0.0 1 1 1.2e-05 0.00029 12.7 0.0 5 19 39 53 36 91 0.91 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_32 - 399 AAA_10 PF12846.2 304 0.00036 12.4 0.3 1 1 6.5e-05 0.0016 10.3 0.0 4 23 58 77 55 88 0.83 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 SbcCD_C PF13558.1 90 0.00022 13.6 0.1 1 1 1.3e-05 0.00046 12.6 0.1 61 88 181 208 163 210 0.79 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_22 - 248 SbcCD_C PF13558.1 90 0.00053 12.4 0.0 1 1 0.0001 0.0036 9.7 0.0 26 84 128 173 113 179 0.72 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 PduV-EutP PF10662.4 143 0.00036 12.5 0.0 1 1 9.6e-06 0.00069 11.6 0.0 6 26 36 56 33 93 0.83 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_2 - 262 ParA PF10609.4 81 0.00051 12.4 0.0 1 2 0.061 4.4 -0.2 0.0 23 55 30 62 22 71 0.77 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 262 ParA PF10609.4 81 0.00051 12.4 0.0 2 2 4.5e-05 0.0032 9.8 0.0 2 49 124 169 123 187 0.79 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_22 - 248 ArgK PF03308.11 267 0.00028 12.1 0.1 1 1 6.5e-06 0.00047 11.4 0.1 15 58 17 61 5 75 0.81 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 UPF0079 PF02367.12 123 3e-05 16.1 0.1 1 1 8.5e-07 6.2e-05 15.1 0.1 8 36 24 52 17 75 0.82 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_2 - 262 AAA_24 PF13479.1 213 0.00046 12.2 0.0 1 1 2.3e-05 0.00082 11.4 0.0 12 50 12 56 11 135 0.67 # 1371 # 2156 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_32 - 399 AAA_24 PF13479.1 213 0.00052 12.0 0.0 1 2 0.012 0.43 2.5 0.0 6 23 58 75 55 86 0.87 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_32 - 399 AAA_24 PF13479.1 213 0.00052 12.0 0.0 2 2 0.00056 0.02 6.9 0.0 111 137 200 226 198 242 0.84 # 28519 # 29715 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 2_12 - 227 NACHT PF05729.7 166 0.00069 11.7 0.2 1 1 4e-05 0.0014 10.7 0.2 2 18 37 53 36 62 0.90 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 NACHT PF05729.7 166 0.0014 10.7 1.3 1 1 0.0001 0.0036 9.4 0.2 5 21 36 52 33 65 0.89 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_12 - 227 AAA_25 PF13481.1 194 1.9e-05 16.6 1.3 1 1 1e-06 3.7e-05 15.6 0.3 32 53 34 55 26 133 0.90 # 10813 # 11493 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_22 - 248 AAA_25 PF13481.1 194 3.5e-05 15.7 0.4 1 2 5e-06 0.00018 13.4 0.0 29 59 27 59 8 97 0.84 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 248 AAA_25 PF13481.1 194 3.5e-05 15.7 0.4 2 2 0.071 2.6 -0.2 0.1 167 189 172 193 139 198 0.62 # 18317 # 19060 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3b04f725-71bd-478d-ae1a-ae553b684e94 # Target file: checkm_output/bins/pGCA_002211885.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002211885.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3b04f725-71bd-478d-ae1a-ae553b684e94 checkm_output/bins/pGCA_002211885.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:13 2020 # [ok]