# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 267 MipZ PF09140.6 261 3.7e-06 19.1 0.1 1 1 4.5e-07 2.2e-05 16.5 0.1 2 48 6 52 5 159 0.77 # 30017 # 30817 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_45 - 264 MipZ PF09140.6 261 6e-06 18.4 0.0 1 1 5.5e-06 0.00027 12.9 0.0 2 118 4 143 2 155 0.56 # 37305 # 38096 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_45 - 264 YhjQ PF06564.7 244 2.9e-13 42.6 0.0 1 1 7.9e-15 3.9e-13 42.2 0.0 4 176 5 184 1 188 0.80 # 37305 # 38096 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_34 - 267 YhjQ PF06564.7 244 5.5e-11 35.1 0.0 1 1 1.5e-12 7.7e-11 34.7 0.0 3 152 6 162 4 168 0.81 # 30017 # 30817 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_98 - 142 Usp PF00582.21 140 1.8e-15 50.3 0.0 1 1 2.1e-17 2.1e-15 50.1 0.0 1 140 1 139 1 139 0.94 # 87006 # 87431 # 1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.211 1_49 - 475 NB-ARC PF00931.17 287 9.1e-07 20.8 0.2 1 1 1.9e-08 1.9e-06 19.8 0.0 10 70 208 268 204 303 0.85 # 39894 # 41318 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_74 - 651 AAA_22 PF13401.1 131 0.00013 15.0 0.0 1 2 0.00027 0.027 7.6 0.0 7 28 258 279 256 357 0.84 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA_22 PF13401.1 131 0.00013 15.0 0.0 2 2 0.002 0.2 4.7 0.0 88 114 511 547 471 560 0.70 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 Miro PF08477.8 119 0.00019 14.9 0.2 1 1 8.2e-06 0.00082 12.8 0.0 2 51 258 307 257 345 0.73 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_34 - 267 ArsA_ATPase PF02374.10 305 3.5e-11 35.5 0.2 1 1 1.3e-12 6.7e-11 34.6 0.1 9 137 13 137 4 172 0.75 # 30017 # 30817 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_45 - 264 ArsA_ATPase PF02374.10 305 8.4e-08 24.4 1.1 1 1 1.7e-08 8.6e-07 21.1 0.4 9 137 11 134 7 137 0.79 # 37305 # 38096 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_74 - 651 Arf PF00025.16 175 5e-05 15.5 0.6 1 3 0.059 5.9 -1.0 0.0 69 102 61 94 26 105 0.81 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 Arf PF00025.16 175 5e-05 15.5 0.6 2 3 1.2e-05 0.0012 11.0 0.0 14 41 255 282 247 292 0.85 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 Arf PF00025.16 175 5e-05 15.5 0.6 3 3 0.018 1.8 0.7 0.1 89 123 508 542 506 548 0.89 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 MCM PF00493.18 331 0.00019 13.2 0.1 1 2 0.067 6.7 -1.8 0.1 178 217 123 162 77 199 0.69 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 MCM PF00493.18 331 0.00019 13.2 0.1 2 2 8.7e-06 0.00087 11.0 0.0 52 79 250 277 244 291 0.84 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_49 - 475 T2SE PF00437.15 272 0.00036 12.3 0.0 1 1 6.1e-06 0.00061 11.6 0.0 83 148 158 237 69 247 0.77 # 39894 # 41318 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_74 - 651 Zeta_toxin PF06414.7 201 0.00035 12.6 1.4 1 2 9.9e-06 0.00099 11.1 0.0 19 61 258 300 254 306 0.84 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 Zeta_toxin PF06414.7 201 0.00035 12.6 1.4 2 2 0.071 7.1 -1.5 0.0 40 82 503 545 497 554 0.72 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_34 - 267 VirC1 PF07015.6 231 0.00065 11.7 0.1 1 1 1.7e-05 0.0017 10.3 0.0 3 39 6 43 4 59 0.75 # 30017 # 30817 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_34 - 267 Fer4_NifH PF00142.13 273 8.7e-06 17.9 0.0 1 1 3.4e-07 1.7e-05 17.0 0.0 8 51 13 57 6 84 0.75 # 30017 # 30817 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_45 - 264 Fer4_NifH PF00142.13 273 1.6e-05 17.1 0.0 1 1 6.9e-07 3.5e-05 16.0 0.0 8 68 11 75 5 86 0.78 # 37305 # 38096 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_74 - 651 AAA_16 PF13191.1 185 0.0011 11.9 0.0 1 1 3.5e-05 0.0035 10.2 0.0 26 58 257 288 252 362 0.82 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA_23 PF13476.1 202 0.0043 10.3 12.4 1 2 0.015 1.5 2.0 1.2 103 158 96 169 8 214 0.47 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA_23 PF13476.1 202 0.0043 10.3 12.4 2 2 1.6e-06 0.00016 14.9 1.5 22 165 258 437 242 464 0.48 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA_18 PF13238.1 129 0.00012 15.3 1.1 1 1 6.7e-06 0.00067 12.9 0.0 1 23 258 289 258 386 0.78 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_12 - 253 adh_short PF00106.20 167 2.3e-21 69.3 0.0 1 1 2.9e-23 2.9e-21 69.0 0.0 1 157 10 168 10 178 0.84 # 9152 # 9910 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_34 - 267 CbiA PF01656.18 195 6.2e-30 96.9 0.2 1 1 1.6e-31 7.9e-30 96.6 0.2 1 193 7 228 7 230 0.81 # 30017 # 30817 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_45 - 264 CbiA PF01656.18 195 9.8e-30 96.3 0.0 1 1 2.4e-31 1.2e-29 96.0 0.0 1 193 5 224 5 226 0.81 # 37305 # 38096 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_74 - 651 AAA_14 PF13173.1 128 0.00055 12.8 1.5 1 2 0.00062 0.062 6.1 0.0 4 40 257 292 254 313 0.71 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA_14 PF13173.1 128 0.00055 12.8 1.5 2 2 0.0021 0.21 4.4 0.1 60 96 510 551 471 560 0.67 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA_29 PF13555.1 62 0.0003 13.2 0.0 1 1 7.5e-06 0.00075 12.0 0.0 25 40 257 272 243 275 0.83 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA PF00004.24 132 1.8e-05 17.9 0.2 1 2 0.0018 0.18 4.9 0.0 1 21 258 278 258 321 0.81 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA PF00004.24 132 1.8e-05 17.9 0.2 2 2 4.2e-05 0.0042 10.2 0.1 57 119 510 566 470 576 0.76 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_12 - 253 KR PF08659.5 181 1.8e-13 43.4 0.1 1 1 2.5e-15 2.5e-13 43.0 0.1 2 110 11 118 10 182 0.92 # 9152 # 9910 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_74 - 651 MMR_HSR1 PF01926.18 116 0.00018 14.4 0.3 1 3 0.041 4.1 0.4 0.0 49 104 54 99 21 159 0.71 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 MMR_HSR1 PF01926.18 116 0.00018 14.4 0.3 2 3 6.7e-05 0.0067 9.3 0.0 2 26 258 282 257 385 0.59 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 MMR_HSR1 PF01926.18 116 0.00018 14.4 0.3 3 3 0.046 4.6 0.2 0.0 44 60 446 472 417 564 0.52 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_69 - 826 TraG-D_C PF12696.2 128 5e-28 90.5 0.1 1 1 1.5e-29 1.5e-27 89.0 0.0 2 124 516 630 515 634 0.85 # 57994 # 60471 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_34 - 267 AAA_31 PF13614.1 157 1.2e-14 47.4 0.6 1 1 9.2e-16 4.6e-14 45.5 0.6 2 150 6 159 5 166 0.78 # 30017 # 30817 # -1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_45 - 264 AAA_31 PF13614.1 157 2.3e-11 36.8 0.9 1 1 8.5e-13 4.2e-11 35.9 0.9 9 149 11 154 4 162 0.77 # 37305 # 38096 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_74 - 651 NTPase_1 PF03266.10 168 0.0002 14.0 0.5 1 1 6.5e-06 0.00065 12.3 0.0 2 99 258 364 257 366 0.79 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 ABC_tran PF00005.22 137 3.9e-05 16.9 3.6 1 1 4.7e-07 4.7e-05 16.6 0.5 14 43 258 321 251 447 0.66 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 AAA_10 PF12846.2 304 3.3e-55 180.5 1.7 1 1 5.2e-57 5.2e-55 179.8 1.7 2 300 256 603 255 607 0.88 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_12 - 253 adh_short_C2 PF13561.1 241 2.3e-28 92.4 0.1 1 1 2.8e-30 2.8e-28 92.2 0.1 6 241 19 250 16 250 0.89 # 9152 # 9910 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_74 - 651 ResIII PF04851.10 184 2e-05 17.3 0.8 1 1 4.2e-07 4.2e-05 16.3 0.2 107 170 473 541 429 551 0.77 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 Zot PF05707.7 193 5e-07 22.3 0.3 1 2 0.059 5.9 -0.8 0.0 4 15 259 270 258 276 0.89 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_74 - 651 Zot PF05707.7 193 5e-07 22.3 0.3 2 2 3e-08 3e-06 19.7 0.1 75 129 509 562 453 567 0.76 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_12 - 253 Epimerase PF01370.16 236 8.5e-06 18.2 1.6 1 1 3.4e-07 3.4e-05 16.3 1.6 1 80 12 107 12 190 0.75 # 9152 # 9910 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_74 - 651 DUF853 PF05872.7 504 1.1e-05 16.8 0.0 1 1 2e-07 2e-05 16.0 0.0 250 308 507 566 467 634 0.78 # 65300 # 67252 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.334 1_69 - 826 TrwB_AAD_bind PF10412.4 386 1.4e-17 56.2 0.0 1 2 6.7e-08 6.7e-06 17.8 0.0 12 133 115 254 105 271 0.89 # 57994 # 60471 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_69 - 826 TrwB_AAD_bind PF10412.4 386 1.4e-17 56.2 0.0 2 2 1.8e-13 1.8e-11 36.1 0.0 245 374 516 641 459 649 0.82 # 57994 # 60471 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_45 - 264 ParA PF10609.4 81 5.8e-06 19.1 0.0 1 1 1.9e-07 1.9e-05 17.4 0.0 2 51 125 172 124 194 0.85 # 37305 # 38096 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.293 1_69 - 826 T4SS-DNA_transf PF02534.9 469 4.3e-43 140.4 0.8 1 2 9.6e-22 9.6e-20 63.4 0.1 45 262 119 351 76 354 0.72 # 57994 # 60471 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_69 - 826 T4SS-DNA_transf PF02534.9 469 4.3e-43 140.4 0.8 2 2 2.4e-25 2.4e-23 75.2 0.1 259 443 466 652 461 675 0.85 # 57994 # 60471 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_86 - 722 TIGR00615 TIGR00615 196 0.00034 12.7 0.0 1 1 9.2e-06 0.00092 11.3 0.0 124 170 93 140 81 145 0.75 # 74215 # 76380 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d55f812f-7821-4548-b5f2-f091d60bc9ad # Target file: checkm_output/bins/pGCA_002209165.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002209165.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d55f812f-7821-4548-b5f2-f091d60bc9ad checkm_output/bins/pGCA_002209165.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:12 2020 # [ok]