# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 282 cobW PF02492.14 178 0.0004 12.0 0.0 1 1 1.1e-05 0.00063 11.4 0.0 1 25 25 49 25 77 0.88 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_2 - 469 3HCDH_N PF02737.13 180 1.7e-06 19.9 0.0 1 1 5.6e-08 3.3e-06 19.0 0.0 1 45 4 48 4 74 0.86 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 3_3 - 258 UvrD_C_2 PF13538.1 104 1.4e-05 17.4 0.0 1 1 4.8e-07 2.8e-05 16.4 0.0 6 79 62 138 55 152 0.81 # 3912 # 4685 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.252 3_12 - 138 Usp PF00582.21 140 2.1e-26 85.0 0.3 1 1 4e-28 2.4e-26 84.8 0.3 1 140 1 137 1 137 0.96 # 10121 # 10534 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_28 - 344 AAA_22 PF13401.1 131 3.3e-05 16.2 0.0 1 1 4.2e-06 0.00025 13.4 0.0 6 38 192 230 188 255 0.77 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 KAP_NTPase PF07693.9 325 5.5e-05 14.4 0.0 1 2 0.00051 0.03 5.4 0.0 163 217 59 114 47 116 0.80 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 KAP_NTPase PF07693.9 325 5.5e-05 14.4 0.0 2 2 0.00015 0.0088 7.1 0.0 6 43 178 213 176 311 0.81 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 AAA_15 PF13175.1 415 4.7e-07 21.3 3.2 1 2 4.9e-07 2.9e-05 15.4 0.4 364 413 63 111 58 113 0.87 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 AAA_15 PF13175.1 415 4.7e-07 21.3 3.2 2 2 0.00033 0.02 6.0 0.1 8 42 168 210 161 266 0.70 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 3_6 - 225 AAA_17 PF13207.1 121 1.3e-05 18.1 1.3 1 1 1.1e-06 2.2e-05 17.5 1.3 23 113 24 122 21 205 0.84 # 5226 # 5900 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_1 - 108 AAA_17 PF13207.1 121 0.00016 14.7 0.7 1 1 9.7e-06 0.00019 14.4 0.7 23 97 24 105 17 108 0.78 # 3 # 326 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 4_1 - 108 AAA_17 PF13207.1 121 0.00027 13.9 0.7 1 1 1.6e-05 0.00032 13.7 0.7 23 97 24 105 17 108 0.77 # 3 # 326 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_28 - 344 AAA_21 PF13304.1 303 2.5e-07 23.0 5.8 1 2 1.8e-07 3.5e-06 19.3 0.9 183 302 30 113 3 114 0.75 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 AAA_21 PF13304.1 303 2.5e-07 23.0 5.8 2 2 0.0018 0.035 6.1 0.3 1 18 192 209 192 266 0.77 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_27 - 105 AAA_21 PF13304.1 303 0.00013 14.1 0.8 1 1 9.2e-06 0.00018 13.6 0.8 255 298 10 53 7 57 0.85 # 23131 # 23445 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.327 1_29 - 282 AAA_21 PF13304.1 303 0.00081 11.5 4.9 1 2 0.00034 0.0066 8.5 0.1 1 16 26 41 26 102 0.85 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_29 - 282 AAA_21 PF13304.1 303 0.00081 11.5 4.9 2 2 0.0074 0.15 4.1 1.9 73 183 155 247 120 256 0.56 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_2 - 469 F420_oxidored PF03807.12 96 3.8e-06 19.5 0.0 1 1 1.8e-07 1e-05 18.1 0.0 1 92 4 97 4 101 0.74 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 344 SMC_N PF02463.14 220 6.8e-06 17.6 0.1 1 2 0.00033 0.019 6.3 0.0 137 210 49 121 19 129 0.82 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 SMC_N PF02463.14 220 6.8e-06 17.6 0.1 2 2 4.8e-05 0.0028 9.0 0.2 23 43 189 209 178 236 0.86 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 Arch_ATPase PF01637.13 234 0.00032 12.6 0.1 1 2 0.033 2 0.2 0.0 104 123 87 106 41 113 0.82 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 Arch_ATPase PF01637.13 234 0.00032 12.6 0.1 2 2 3.7e-05 0.0022 9.9 0.0 20 52 190 218 178 262 0.78 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 AAA_16 PF13191.1 185 2.6e-05 16.4 0.0 1 2 0.025 1.5 0.9 0.0 67 157 24 107 8 111 0.67 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 AAA_16 PF13191.1 185 2.6e-05 16.4 0.0 2 2 4.1e-06 0.00024 13.2 0.0 26 63 192 227 179 255 0.71 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_29 - 282 AAA_23 PF13476.1 202 0.0007 12.1 0.2 1 2 1.2e-05 0.0007 12.1 0.2 14 35 16 40 3 41 0.79 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_29 - 282 AAA_23 PF13476.1 202 0.0007 12.1 0.2 2 2 0.094 5.5 -0.6 2.0 108 112 189 193 46 279 0.64 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_29 - 282 AAA_29 PF13555.1 62 3.4e-06 18.8 0.0 1 1 2.7e-07 7.8e-06 17.6 0.0 22 40 23 41 11 47 0.80 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 344 AAA_29 PF13555.1 62 2.5e-05 16.0 0.1 1 1 2.2e-06 6.4e-05 14.7 0.1 24 42 191 209 177 212 0.83 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_2 - 469 NAD_binding_11 PF14833.1 122 0.00025 13.3 0.0 1 2 6.2e-05 0.0037 9.5 0.0 1 35 175 210 175 230 0.85 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_2 - 469 NAD_binding_11 PF14833.1 122 0.00025 13.3 0.0 2 2 0.036 2.1 0.6 0.0 76 105 401 430 392 441 0.83 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_29 - 282 DUF258 PF03193.11 161 3.5e-06 18.5 0.0 1 1 2e-07 5.8e-06 17.7 0.0 22 64 10 54 3 80 0.82 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 344 DUF258 PF03193.11 161 0.00011 13.5 0.0 1 1 7.1e-06 0.00021 12.7 0.0 20 55 175 210 157 230 0.79 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_2 - 469 NAD_binding_2 PF03446.10 163 1.2e-51 167.0 0.1 1 1 2.9e-53 1.7e-51 166.4 0.1 1 163 2 173 2 173 0.97 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 344 AAA_33 PF13671.1 143 0.00056 12.0 0.0 1 1 1.9e-05 0.0011 11.0 0.0 1 32 192 224 192 258 0.84 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_2 - 469 NAD_Gly3P_dh_N PF01210.18 157 0.00017 13.5 0.0 1 1 1.2e-05 0.0007 11.5 0.0 2 42 5 45 4 69 0.90 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_2 - 469 2-Hacid_dh_C PF02826.14 178 2.6e-05 15.6 0.0 1 1 1.1e-06 6.6e-05 14.3 0.0 37 74 3 43 1 73 0.80 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 344 AAA_30 PF13604.1 196 0.00047 11.9 0.0 1 1 3e-05 0.0018 10.0 0.0 16 37 188 209 175 217 0.77 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_2 - 469 ApbA PF02558.11 151 5.5e-05 14.8 0.0 1 1 2.1e-06 0.00012 13.7 0.0 1 98 5 96 5 132 0.77 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_28 - 344 ABC_tran PF00005.22 137 2.1e-10 33.2 0.0 1 2 3.3e-06 9.6e-05 14.9 0.0 86 136 29 78 1 79 0.67 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 ABC_tran PF00005.22 137 2.1e-10 33.2 0.0 2 2 1e-06 2.9e-05 16.5 0.0 3 80 182 274 180 339 0.71 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_29 - 282 ABC_tran PF00005.22 137 1.9e-06 20.4 0.0 1 1 8.6e-08 2.5e-06 20.0 0.0 1 51 14 71 14 164 0.77 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 344 AAA_19 PF13245.1 76 0.00013 13.9 0.2 1 1 4.7e-06 0.00028 12.9 0.2 3 32 184 212 182 214 0.81 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_1 - 266 G6PD_N PF00479.17 183 4.2e-67 218.1 0.7 1 1 1e-68 6e-67 217.5 0.7 1 183 10 188 10 188 0.98 # 1 # 798 # -1 # ID=1_1;partial=10;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 1_28 - 344 Viral_helicase1 PF01443.13 234 6.9e-05 14.6 0.0 1 1 2e-06 0.00012 13.8 0.0 2 23 194 216 193 252 0.78 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 1_28 - 344 DUF815 PF05673.8 250 0.00012 13.2 0.1 1 1 4.8e-06 0.00028 12.0 0.0 55 77 190 214 174 244 0.81 # 23507 # 24538 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.316 3_12 - 138 UvrC_HhH_N PF08459.6 155 6.1e-05 14.7 0.1 1 1 1.7e-06 9.9e-05 14.1 0.1 82 146 6 70 3 75 0.80 # 10121 # 10534 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_2 - 469 TrkA_N PF02254.13 116 0.00029 13.0 0.0 1 1 1.1e-05 0.00063 11.9 0.0 3 56 7 60 5 75 0.86 # 963 # 2369 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.334 1_29 - 282 AAA_25 PF13481.1 194 3.3e-05 15.5 0.0 1 1 1.1e-06 6.7e-05 14.5 0.0 30 56 21 47 14 62 0.88 # 24549 # 25394 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fb95e366-c069-4c43-a2c3-35b5163007cc # Target file: checkm_output/bins/pGCA_002208905.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002208905.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fb95e366-c069-4c43-a2c3-35b5163007cc checkm_output/bins/pGCA_002208905.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:10 2020 # [ok]