# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 725 Mg_chelatase PF01078.16 207 6.3e-05 12.4 0.0 1 1 7.3e-06 0.00011 11.6 0.0 23 59 513 549 503 587 0.76 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 ABC_ATPase PF09818.4 448 6.6e-07 18.4 1.4 1 2 0.051 0.76 -1.6 0.5 247 262 515 530 505 534 0.77 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 ABC_ATPase PF09818.4 448 6.6e-07 18.4 1.4 2 2 8.9e-08 1.3e-06 17.3 0.0 301 381 603 684 597 698 0.88 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 NB-ARC PF00931.17 287 6.8e-06 15.3 0.0 1 1 8.4e-07 1.3e-05 14.4 0.0 17 38 510 531 498 547 0.82 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_22 PF13401.1 131 9.6e-06 16.0 0.0 1 1 2.1e-06 3.2e-05 14.4 0.0 7 37 515 551 510 598 0.80 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_17 PF13207.1 121 1.8e-07 22.3 0.0 1 1 3e-08 4.5e-07 21.0 0.0 1 20 514 533 514 575 0.76 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_21 PF13304.1 303 4.3e-08 23.6 0.3 1 2 8.6e-07 1.3e-05 15.5 0.0 4 59 517 574 515 581 0.67 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_21 PF13304.1 303 4.3e-08 23.6 0.3 2 2 0.0012 0.017 5.2 0.1 235 295 624 679 601 686 0.82 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 MobB PF03205.9 140 5.4e-05 13.2 0.0 1 1 9.3e-06 0.00014 11.8 0.0 3 23 515 535 513 554 0.83 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 T2SE PF00437.15 272 8.2e-06 15.0 0.0 1 1 9.3e-07 1.4e-05 14.3 0.0 115 176 499 553 413 565 0.80 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 G-alpha PF00503.15 389 3.8e-06 15.9 0.1 1 1 4e-07 6e-06 15.3 0.1 56 126 510 586 470 683 0.76 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 SMC_N PF02463.14 220 5.7e-08 22.4 0.1 1 1 2.8e-07 4.2e-06 16.3 0.1 123 210 555 694 499 702 0.68 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_16 PF13191.1 185 8.8e-06 16.0 0.0 1 1 1.5e-06 2.2e-05 14.7 0.0 28 85 516 570 505 617 0.81 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_18 PF13238.1 129 2.7e-07 21.2 0.0 1 1 5.9e-08 8.9e-07 19.5 0.0 1 23 515 549 515 574 0.71 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_29 PF13555.1 62 6.7e-05 12.7 0.0 1 1 1.4e-05 0.00022 11.1 0.0 20 39 510 528 497 536 0.81 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 Sigma54_activat PF00158.21 168 4.3e-05 13.3 0.1 1 1 9.9e-06 0.00015 11.5 0.0 10 66 500 560 493 565 0.71 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_33 PF13671.1 143 2.9e-05 14.2 0.1 1 1 8.2e-06 0.00012 12.2 0.0 4 20 517 533 515 554 0.90 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 ABC_tran PF00005.22 137 2.6e-33 105.5 0.1 1 1 5.1e-34 7.7e-33 103.9 0.0 1 137 502 654 502 654 0.92 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_10 PF12846.2 304 0.0001 12.0 0.1 1 1 1.7e-05 0.00025 10.7 0.1 5 23 516 534 513 543 0.89 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_24 PF13479.1 213 6.5e-05 12.8 1.1 1 2 2.5e-05 0.00038 10.3 0.1 4 23 513 532 510 536 0.88 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 AAA_24 PF13479.1 213 6.5e-05 12.8 1.1 2 2 0.024 0.36 0.5 0.1 118 138 664 684 660 704 0.75 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 NACHT PF05729.7 166 7.9e-05 12.6 0.1 1 2 0.049 0.73 -0.3 0.0 89 117 355 384 345 388 0.81 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_6 - 725 NACHT PF05729.7 166 7.9e-05 12.6 0.1 2 2 3.6e-05 0.00054 9.9 0.0 3 21 515 533 513 558 0.87 # 3215 # 5389 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8d5ff37c-e086-4e1e-a8e4-7af6102b5c33 # Target file: checkm_output/bins/pGCA_002205775.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002205775.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8d5ff37c-e086-4e1e-a8e4-7af6102b5c33 checkm_output/bins/pGCA_002205775.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:09 2020 # [ok]