# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 192 RuvB_C PF05491.8 76 0.00022 12.2 0.4 1 2 0.038 1.2 0.2 0.1 55 67 121 133 117 139 0.82 # 22075 # 22650 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 RuvB_C PF05491.8 76 0.00022 12.2 0.4 2 2 8e-05 0.0025 8.8 0.0 6 43 145 178 142 182 0.86 # 22075 # 22650 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_15 - 209 FeoB_N PF02421.13 156 5.7e-05 13.7 3.4 1 2 4.4e-05 0.0014 9.2 0.0 3 24 30 51 28 56 0.89 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 FeoB_N PF02421.13 156 5.7e-05 13.7 3.4 2 2 0.0015 0.046 4.2 1.0 85 131 161 207 129 208 0.76 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_22 PF13401.1 131 6.9e-07 20.8 0.8 1 1 6.8e-08 2.1e-06 19.2 0.8 4 129 27 195 24 197 0.75 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_15 PF13175.1 415 1.7e-08 25.1 8.5 1 2 6.3e-06 0.00019 11.7 6.2 8 91 12 87 4 124 0.61 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_15 PF13175.1 415 1.7e-08 25.1 8.5 2 2 1.6e-06 4.9e-05 13.7 2.7 291 414 87 193 62 194 0.66 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_17 PF13207.1 121 1.1e-05 17.5 0.3 1 1 2.1e-06 3.3e-05 16.0 0.3 3 49 31 74 30 207 0.75 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_5 - 225 AAA_17 PF13207.1 121 7.1e-05 14.9 0.7 1 1 7.4e-06 0.00012 14.2 0.7 23 112 24 121 19 171 0.81 # 4243 # 4917 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_15 - 209 AAA_21 PF13304.1 303 2e-16 51.9 5.2 1 1 2.4e-15 7.4e-14 43.5 5.2 3 301 31 193 29 195 0.82 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 Zeta_toxin PF06414.7 201 4.4e-05 13.9 0.0 1 1 2e-06 6.2e-05 13.4 0.0 14 61 25 73 15 94 0.82 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 SMC_N PF02463.14 220 6.6e-08 23.2 5.3 1 1 8.6e-09 2.7e-07 21.3 5.3 19 213 21 205 4 208 0.75 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_16 PF13191.1 185 6.9e-05 14.1 0.5 1 1 3.5e-06 0.00011 13.5 0.5 24 42 27 45 16 200 0.89 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_23 PF13476.1 202 5.4e-05 14.8 8.5 1 1 1.2e-05 0.00038 12.1 8.5 10 131 17 138 11 196 0.55 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_18 PF13238.1 129 0.00049 11.7 4.4 1 1 8.1e-05 0.0025 9.4 4.4 3 64 32 120 31 203 0.64 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_13 PF13166.1 712 1.1e-07 21.9 3.2 1 2 0.00015 0.0047 6.6 1.2 23 77 34 87 13 120 0.64 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_13 PF13166.1 712 1.1e-07 21.9 3.2 2 2 3.6e-07 1.1e-05 15.2 0.0 525 578 147 198 124 205 0.82 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_29 PF13555.1 62 1.1e-07 22.6 0.1 1 1 6.5e-09 2e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 MMR_HSR1 PF01926.18 116 1.8e-05 16.0 2.9 1 1 1.9e-06 5.9e-05 14.3 2.9 3 29 31 55 29 205 0.55 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 DUF258 PF03193.11 161 2e-09 28.1 0.1 1 1 1e-10 3.2e-09 27.4 0.1 13 67 4 59 1 70 0.87 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 NTPase_1 PF03266.10 168 8e-05 13.6 0.4 1 2 0.0012 0.037 5.0 0.0 3 19 31 47 29 57 0.86 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 NTPase_1 PF03266.10 168 8e-05 13.6 0.4 2 2 0.00029 0.0089 7.0 0.2 74 136 128 192 104 207 0.74 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 Dynamin_N PF00350.18 168 8.1e-05 13.7 2.1 1 1 7.1e-06 0.00022 12.3 2.1 2 27 31 56 31 196 0.78 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 ABC_tran PF00005.22 137 3e-37 119.2 0.1 1 1 1.3e-38 4.2e-37 118.8 0.1 1 136 17 159 17 160 0.93 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 AAA_10 PF12846.2 304 5.1e-05 14.0 0.2 1 1 2.7e-06 8.3e-05 13.3 0.1 3 22 29 48 27 75 0.84 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 1_15 - 209 SbcCD_C PF13558.1 90 7.1e-06 17.2 0.0 1 1 3.1e-06 9.6e-05 13.6 0.0 11 88 110 174 103 176 0.81 # 10906 # 11532 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.293 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5011d586-fb2e-4c76-9117-567d92cc720e # Target file: checkm_output/bins/pGCA_002202075.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002202075.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5011d586-fb2e-4c76-9117-567d92cc720e checkm_output/bins/pGCA_002202075.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:04 2020 # [ok]