# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 287 Saccharop_dh PF03435.13 386 0.0015 11.9 0.1 1 1 7e-06 0.002 11.5 0.1 2 68 3 66 2 116 0.86 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_10 - 255 IstB_IS21 PF01695.12 178 3.8e-63 206.5 0.1 1 1 2.2e-65 6.3e-63 205.7 0.0 5 178 57 230 53 230 0.98 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 3_5 - 262 MipZ PF09140.6 261 2.3e-11 37.6 0.3 1 1 5.2e-12 4.9e-10 33.2 0.3 2 135 9 158 8 176 0.65 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 4_3 - 322 MipZ PF09140.6 261 3.3e-11 37.1 0.8 1 2 1.3e-05 0.0012 12.3 0.2 3 53 5 56 3 86 0.78 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 4_3 - 322 MipZ PF09140.6 261 3.3e-11 37.1 0.8 2 2 6.5e-09 6.1e-07 23.1 0.0 68 131 130 193 113 213 0.84 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 5_3 - 353 MipZ PF09140.6 261 4.9e-05 16.8 2.7 1 3 0.0082 0.77 3.1 0.1 7 32 20 45 14 75 0.77 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 5_3 - 353 MipZ PF09140.6 261 4.9e-05 16.8 2.7 2 3 0.054 5.1 0.4 0.2 23 171 100 153 79 191 0.45 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 5_3 - 353 MipZ PF09140.6 261 4.9e-05 16.8 2.7 3 3 1e-05 0.00094 12.6 0.2 84 127 190 233 138 242 0.64 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 3_5 - 262 YhjQ PF06564.7 244 3.6e-11 37.2 0.0 1 1 3.4e-13 4.8e-11 36.8 0.0 3 147 9 151 7 166 0.86 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 4_3 - 322 YhjQ PF06564.7 244 1.7e-05 18.7 0.0 1 2 0.0022 0.32 4.7 0.0 10 56 11 59 2 122 0.70 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 4_3 - 322 YhjQ PF06564.7 244 1.7e-05 18.7 0.0 2 2 1.3e-05 0.0018 12.0 0.0 103 152 148 195 117 202 0.82 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_21 - 154 SSB PF00436.20 104 2.4e-37 121.4 0.4 1 1 1.2e-39 3.3e-37 120.9 0.4 1 103 2 102 2 103 0.97 # 8835 # 9296 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_25 - 2364 Methyltransf_18 PF12847.2 112 0.001 14.0 0.0 1 1 2.7e-05 0.0075 11.2 0.0 2 109 868 976 867 979 0.70 # 10360 # 17451 # -1 # ID=2_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.345 3_35 - 622 DUF87 PF01935.12 229 0.002 12.3 0.0 1 1 1.4e-05 0.002 12.3 0.0 23 108 455 535 434 574 0.71 # 22732 # 24597 # 1 # ID=3_35;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.373 2_37 - 308 DUF87 PF01935.12 229 0.0072 10.5 11.9 1 1 5.8e-05 0.0082 10.3 10.3 85 184 192 292 165 306 0.76 # 24920 # 25843 # -1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_41 - 287 NmrA PF05368.8 233 1.2e-20 68.1 0.2 1 1 5.1e-23 1.4e-20 67.8 0.2 2 232 3 222 2 223 0.86 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 5_10 - 272 Septin PF00735.13 281 3.6e-05 17.2 0.1 1 1 1.7e-07 4.8e-05 16.8 0.1 104 171 5 71 2 106 0.81 # 6617 # 7432 # -1 # ID=5_10;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.359 1_10 - 255 AAA_22 PF13401.1 131 7.3e-07 23.8 0.1 1 2 3e-06 0.00085 13.9 0.0 3 37 98 135 96 158 0.68 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 AAA_22 PF13401.1 131 7.3e-07 23.8 0.1 2 2 0.00017 0.048 8.2 0.0 73 114 145 191 123 205 0.60 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 AAA_17 PF13207.1 121 0.00034 15.8 1.7 1 1 3.5e-06 0.00099 14.3 0.3 2 63 102 168 101 243 0.57 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 6_2 - 205 AAA_21 PF13304.1 303 0.00083 13.7 1.0 1 1 4.6e-06 0.0013 13.1 0.6 69 161 59 154 47 190 0.79 # 3173 # 3787 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 2_25 - 2364 Helicase_C PF00271.26 78 3.7e-07 24.4 0.0 1 1 4.4e-09 1.2e-06 22.7 0.0 10 78 2004 2074 1999 2074 0.89 # 10360 # 17451 # -1 # ID=2_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.345 3_5 - 262 ArsA_ATPase PF02374.10 305 1.3e-10 35.2 1.5 1 1 1.4e-11 1.3e-09 31.8 1.5 9 137 16 132 10 232 0.71 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 4_3 - 322 ArsA_ATPase PF02374.10 305 1.1e-06 22.2 2.0 1 1 2.2e-07 2.1e-05 18.1 2.0 8 136 10 170 4 175 0.61 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 5_3 - 353 ArsA_ATPase PF02374.10 305 3.3e-06 20.7 2.6 1 2 3.1e-06 0.00029 14.3 0.2 7 128 20 156 16 158 0.72 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 5_3 - 353 ArsA_ATPase PF02374.10 305 3.3e-06 20.7 2.6 2 2 0.00056 0.052 6.9 0.9 56 136 124 214 104 221 0.59 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 1_10 - 255 PhoH PF02562.11 205 5.3e-07 23.4 0.0 1 1 3.4e-09 9.5e-07 22.6 0.0 15 73 95 152 83 196 0.80 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 AFG1_ATPase PF03969.11 362 8.7e-05 15.8 0.0 1 1 4.8e-07 0.00013 15.2 0.0 67 212 104 245 92 253 0.78 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 3_5 - 262 VirC1 PF07015.6 231 0.00075 13.0 0.1 1 1 5.5e-06 0.0015 11.9 0.1 3 89 9 96 7 108 0.67 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 3_5 - 262 Fer4_NifH PF00142.13 273 9.1e-10 32.5 1.2 1 2 4.7e-11 6.6e-09 29.6 0.1 8 69 16 80 11 97 0.87 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 3_5 - 262 Fer4_NifH PF00142.13 273 9.1e-10 32.5 1.2 2 2 0.016 2.2 1.7 0.1 160 239 165 249 137 257 0.64 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 4_3 - 322 Fer4_NifH PF00142.13 273 4e-05 17.2 2.3 1 2 3.1e-06 0.00043 13.9 0.1 7 68 10 75 5 82 0.83 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 4_3 - 322 Fer4_NifH PF00142.13 273 4e-05 17.2 2.3 2 2 0.0076 1.1 2.7 0.2 161 244 203 293 153 298 0.63 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_10 - 255 AAA_16 PF13191.1 185 8.6e-05 16.9 0.0 1 1 8e-07 0.00022 15.6 0.0 24 80 99 160 87 198 0.76 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 AAA_18 PF13238.1 129 0.00079 14.1 0.2 1 1 1.8e-05 0.0025 12.5 0.1 1 87 102 175 102 200 0.67 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 3_5 - 262 AAA_18 PF13238.1 129 0.0015 13.2 0.0 1 1 2.4e-05 0.0033 12.1 0.0 8 68 18 94 17 133 0.54 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 1_41 - 287 adh_short PF00106.20 167 1.7e-06 22.4 0.0 1 1 1.3e-08 3.6e-06 21.4 0.0 3 75 2 67 1 101 0.84 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 3_40 - 51 AAA_13 PF13166.1 712 0.00021 14.2 9.6 1 1 8e-07 0.00023 14.1 9.6 411 456 3 48 1 49 0.93 # 28426 # 28578 # 1 # ID=3_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.340 3_5 - 262 CbiA PF01656.18 195 4.8e-39 128.1 1.1 1 1 8.5e-41 6e-39 127.8 1.1 2 177 11 208 10 227 0.78 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 4_3 - 322 CbiA PF01656.18 195 2.5e-31 102.9 0.5 1 1 4.8e-33 3.4e-31 102.5 0.5 1 194 5 264 5 265 0.80 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 5_3 - 353 CbiA PF01656.18 195 1.4e-28 93.9 5.5 1 1 1.5e-29 1.1e-27 91.1 5.5 6 165 21 278 16 310 0.80 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 1_10 - 255 CbiA PF01656.18 195 0.0022 11.8 0.8 1 2 0.0017 0.12 6.1 0.1 6 21 106 121 102 130 0.81 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 CbiA PF01656.18 195 0.0022 11.8 0.8 2 2 0.0081 0.57 3.9 0.0 78 102 142 168 121 172 0.64 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_41 - 287 Polysacc_synt_2 PF02719.10 294 0.00017 14.9 0.1 1 1 1.7e-06 0.00048 13.4 0.0 1 36 2 38 2 62 0.84 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_10 - 255 AAA_14 PF13173.1 128 9.5e-08 26.4 0.4 1 1 1.4e-09 3.9e-07 24.4 0.1 5 84 102 190 98 214 0.74 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 AAA PF00004.24 132 3.3e-07 25.0 0.1 1 1 2.8e-09 7.9e-07 23.7 0.0 1 111 102 201 102 223 0.73 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 Bac_DnaA PF00308.13 219 4e-13 43.8 0.1 1 1 2.2e-15 6.2e-13 43.2 0.1 37 136 102 199 83 214 0.90 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_41 - 287 KR PF08659.5 181 9.9e-05 16.4 0.0 1 2 1.6e-06 0.00046 14.2 0.1 3 76 2 67 1 98 0.68 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_41 - 287 KR PF08659.5 181 9.9e-05 16.4 0.0 2 2 0.087 24 -1.2 0.0 137 176 207 246 200 249 0.88 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_10 - 255 Sigma54_activat PF00158.21 168 0.0003 14.7 0.1 1 1 5e-06 0.0014 12.5 0.1 18 80 95 153 85 196 0.66 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 DUF258 PF03193.11 161 0.00098 12.7 0.0 1 1 5.7e-06 0.0016 12.0 0.0 33 73 97 149 68 170 0.75 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 3_46 - 604 TraG-D_C PF12696.2 128 8.5e-35 113.8 0.1 1 1 1e-36 1.4e-34 113.1 0.1 2 127 414 531 413 532 0.91 # 31846 # 33657 # 1 # ID=3_46;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.344 2_45 - 945 TraG-D_C PF12696.2 128 1.3e-23 77.6 0.2 1 1 2.3e-25 3.3e-23 76.3 0.2 2 128 582 702 581 702 0.88 # 34098 # 36932 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 5_3 - 353 AAA_31 PF13614.1 157 1e-13 45.8 0.7 1 2 4.7e-08 4.4e-06 21.1 0.0 8 93 21 106 14 114 0.76 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 5_3 - 353 AAA_31 PF13614.1 157 1e-13 45.8 0.7 2 2 8.9e-08 8.3e-06 20.2 0.5 108 154 195 240 141 243 0.83 # 1840 # 2898 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316 3_5 - 262 AAA_31 PF13614.1 157 6.3e-13 43.3 0.0 1 1 1e-14 9.7e-13 42.7 0.0 3 155 10 158 8 160 0.77 # 2954 # 3739 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.345 4_3 - 322 AAA_31 PF13614.1 157 1.4e-09 32.5 0.1 1 2 1.3e-05 0.0013 13.1 0.0 3 116 5 110 4 129 0.79 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 4_3 - 322 AAA_31 PF13614.1 157 1.4e-09 32.5 0.1 2 2 8.4e-07 7.9e-05 17.0 0.0 111 151 154 193 148 196 0.92 # 1561 # 2526 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_10 - 255 NTPase_1 PF03266.10 168 0.0012 12.9 0.1 1 2 0.0067 1.9 2.5 0.0 4 23 104 123 101 133 0.72 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 NTPase_1 PF03266.10 168 0.0012 12.9 0.1 2 2 0.00014 0.041 8.0 0.0 85 110 150 175 131 236 0.75 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 2_25 - 2364 Methyltransf_26 PF13659.1 117 7.3e-14 46.2 0.0 1 1 6.5e-16 1.8e-13 44.9 0.0 2 116 869 979 868 980 0.92 # 10360 # 17451 # -1 # ID=2_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.345 1_10 - 255 AAA_30 PF13604.1 196 0.0024 11.8 0.0 1 1 1.5e-05 0.0042 11.0 0.0 17 105 99 172 93 193 0.75 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 3_35 - 622 FtsK_SpoIIIE PF01580.13 205 0.0013 12.6 0.0 1 1 9.6e-06 0.0027 11.5 0.0 27 78 441 493 427 544 0.78 # 22732 # 24597 # 1 # ID=3_35;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.373 2_25 - 2364 Eco57I PF07669.6 106 4e-07 24.8 0.8 1 1 1.7e-08 4.7e-06 21.3 0.2 2 90 929 1013 928 1032 0.73 # 10360 # 17451 # -1 # ID=2_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.345 1_10 - 255 RuvB_N PF05496.7 234 5.1e-06 20.0 0.0 1 1 3.3e-08 9.4e-06 19.2 0.0 47 113 96 172 63 186 0.74 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 AAA_19 PF13245.1 76 9.5e-05 16.5 0.0 1 1 7e-07 0.0002 15.5 0.0 13 62 103 146 96 157 0.82 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_41 - 287 RmlD_sub_bind PF04321.12 287 8e-05 16.0 0.0 1 2 5e-06 0.0014 11.9 0.0 3 58 2 74 1 98 0.78 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_41 - 287 RmlD_sub_bind PF04321.12 287 8e-05 16.0 0.0 2 2 0.0084 2.4 1.3 0.0 201 233 185 217 158 234 0.72 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 2_7 - 93 Methyltransf_22 PF13383.1 243 0.00035 14.5 0.3 1 1 1.3e-06 0.00038 14.4 0.3 149 229 5 80 1 88 0.79 # 3080 # 3358 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_41 - 287 NAD_binding_10 PF13460.1 183 1.8e-11 38.8 0.0 1 1 8.5e-14 2.4e-11 38.3 0.0 2 149 3 145 2 172 0.87 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 2_42 - 857 AAA_10 PF12846.2 304 4.2e-31 102.8 0.4 1 1 1.6e-32 8.7e-31 101.8 0.4 2 301 469 810 468 813 0.89 # 29284 # 31854 # -1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.357 3_36 - 182 AAA_10 PF12846.2 304 5.7e-25 82.7 0.2 1 1 1.2e-26 6.9e-25 82.4 0.2 167 303 6 137 3 138 0.97 # 24569 # 25114 # 1 # ID=3_36;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.344 3_35 - 622 AAA_10 PF12846.2 304 2.7e-17 57.5 0.0 1 1 2.1e-18 1.2e-16 55.3 0.0 2 151 456 604 455 619 0.76 # 22732 # 24597 # 1 # ID=3_35;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.373 3_46 - 604 AAA_10 PF12846.2 304 2e-09 31.6 0.3 1 1 5.5e-11 3.1e-09 31.0 0.3 1 299 143 490 143 494 0.69 # 31846 # 33657 # 1 # ID=3_46;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.344 1_10 - 255 AAA_10 PF12846.2 304 0.00087 13.1 0.0 1 1 4e-05 0.0022 11.8 0.0 3 36 101 167 99 171 0.73 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_41 - 287 3Beta_HSD PF01073.14 280 3.7e-06 20.2 0.7 1 1 4.9e-08 1.4e-05 18.3 0.7 1 116 3 103 3 130 0.81 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_10 - 255 ResIII PF04851.10 184 0.00012 16.4 0.4 1 2 2.6e-06 0.00074 13.7 0.1 22 70 85 146 53 159 0.83 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 ResIII PF04851.10 184 0.00012 16.4 0.4 2 2 0.042 12 0.0 0.0 146 162 160 176 131 199 0.61 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 2_25 - 2364 Methyltransf_31 PF13847.1 152 0.00011 16.2 0.1 1 1 3.1e-06 0.00089 13.2 0.1 3 118 867 984 865 1037 0.74 # 10360 # 17451 # -1 # ID=2_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.345 1_10 - 255 Zot PF05707.7 193 0.00073 13.4 0.1 1 2 1.2e-05 0.0034 11.2 0.0 4 47 103 145 102 181 0.73 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 Zot PF05707.7 193 0.00073 13.4 0.1 2 2 0.075 21 -1.2 0.0 30 54 195 221 183 250 0.50 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 Viral_helicase1 PF01443.13 234 0.00097 13.0 0.0 1 1 6.9e-06 0.002 12.0 0.0 5 75 106 173 102 183 0.71 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 TIP49 PF06068.8 398 0.00025 14.2 0.1 1 1 1.2e-06 0.00033 13.8 0.1 52 117 101 169 90 248 0.63 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 PduV-EutP PF10662.4 143 0.00035 14.4 0.0 1 1 2.5e-06 0.00071 13.4 0.0 3 41 101 139 99 144 0.90 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_41 - 287 Epimerase PF01370.16 236 2.1e-05 18.4 0.3 1 1 1.5e-07 4.2e-05 17.4 0.1 2 64 3 66 2 136 0.84 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 2_25 - 2364 DEAD PF00270.24 169 7.1e-07 23.2 0.8 1 1 1e-07 2.9e-05 18.0 0.8 2 91 1552 1637 1551 1794 0.73 # 10360 # 17451 # -1 # ID=2_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.345 1_73 - 508 Methyltransf_27 PF13708.1 194 7.8e-23 75.3 1.3 1 1 5.8e-25 1.6e-22 74.3 1.3 4 193 276 479 273 479 0.92 # 65493 # 67016 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 3_46 - 604 TrwB_AAD_bind PF10412.4 386 5e-19 62.5 0.1 1 2 0.0024 0.34 3.8 0.0 19 130 147 265 136 284 0.72 # 31846 # 33657 # 1 # ID=3_46;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.344 3_46 - 604 TrwB_AAD_bind PF10412.4 386 5e-19 62.5 0.1 2 2 2.2e-19 3.1e-17 56.5 0.1 245 377 414 542 331 546 0.84 # 31846 # 33657 # 1 # ID=3_46;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.344 2_45 - 945 TrwB_AAD_bind PF10412.4 386 9.1e-13 41.9 0.5 1 2 0.038 5.3 -0.2 0.0 90 134 371 416 365 432 0.81 # 34098 # 36932 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_45 - 945 TrwB_AAD_bind PF10412.4 386 9.1e-13 41.9 0.5 2 2 3.5e-14 4.9e-12 39.4 0.2 236 373 573 708 561 715 0.84 # 34098 # 36932 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_17 - 767 RNase_PH PF01138.16 132 0.00059 14.5 3.6 1 3 0.033 9.4 0.9 0.1 20 38 515 533 513 558 0.76 # 14088 # 16388 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_17 - 767 RNase_PH PF01138.16 132 0.00059 14.5 3.6 2 3 0.0063 1.8 3.3 0.1 20 38 591 609 589 634 0.76 # 14088 # 16388 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 1_17 - 767 RNase_PH PF01138.16 132 0.00059 14.5 3.6 3 3 0.00013 0.036 8.8 0.1 20 65 667 711 665 736 0.71 # 14088 # 16388 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.369 3_46 - 604 T4SS-DNA_transf PF02534.9 469 2.9e-47 155.6 1.2 1 1 2.8e-49 3.9e-47 155.2 1.2 45 450 144 556 95 583 0.79 # 31846 # 33657 # 1 # ID=3_46;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.344 2_45 - 945 T4SS-DNA_transf PF02534.9 469 6.8e-18 58.8 2.1 1 2 1.5e-19 2.2e-17 57.1 0.1 47 432 264 708 229 712 0.78 # 34098 # 36932 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_45 - 945 T4SS-DNA_transf PF02534.9 469 6.8e-18 58.8 2.1 2 2 0.018 2.6 0.8 0.4 126 191 855 927 815 942 0.68 # 34098 # 36932 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_41 - 287 DapB_N PF01113.15 124 0.00038 14.8 0.7 1 2 5.3e-05 0.015 9.6 0.4 4 32 3 31 1 101 0.80 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_41 - 287 DapB_N PF01113.15 124 0.00038 14.8 0.7 2 2 0.0062 1.7 2.9 0.0 12 79 176 250 175 256 0.52 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_10 - 255 RNA_helicase PF00910.17 107 3.1e-06 21.7 0.2 1 2 0.05 14 0.3 0.0 37 78 19 62 3 91 0.79 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 RNA_helicase PF00910.17 107 3.1e-06 21.7 0.2 2 2 1.3e-07 3.8e-05 18.2 0.0 1 75 102 187 102 201 0.85 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_41 - 287 TrkA_N PF02254.13 116 6.7e-08 26.9 0.2 1 1 9e-10 2.5e-07 25.1 0.1 5 74 6 81 2 113 0.75 # 48031 # 48891 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 2_21 - 154 tRNA_anti-codon PF01336.20 75 2e-05 18.8 0.2 1 1 1.1e-07 3.1e-05 18.2 0.2 27 71 47 94 5 103 0.83 # 8835 # 9296 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_10 - 255 NACHT PF05729.7 166 0.00015 15.8 0.1 1 2 5.3e-06 0.0015 12.6 0.0 3 29 102 128 100 160 0.79 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 NACHT PF05729.7 166 0.00015 15.8 0.1 2 2 0.021 6 0.8 0.0 85 126 164 199 134 205 0.72 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 1_10 - 255 AAA_25 PF13481.1 194 0.0002 15.2 0.0 1 1 1.7e-06 0.00049 13.9 0.0 31 61 97 127 84 140 0.84 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 2_25 - 2364 SNF2_N PF00176.18 299 1.8e-17 57.4 0.5 1 1 2.1e-19 6e-17 55.7 0.5 28 258 1567 1894 1549 1933 0.69 # 10360 # 17451 # -1 # ID=2_25;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.345 1_10 - 255 AAA_5 PF07728.9 139 0.00077 13.6 0.1 1 1 1.4e-05 0.004 11.3 0.0 1 92 101 189 101 195 0.65 # 6716 # 7480 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.356 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a57f0c85-fb0c-45b5-8ba1-430adb719054 # Target file: checkm_output/bins/pGCA_002197645.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002197645.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a57f0c85-fb0c-45b5-8ba1-430adb719054 checkm_output/bins/pGCA_002197645.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:04 2020 # [ok]