# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 297 MipZ PF09140.6 261 4.3e-14 43.1 0.8 1 2 1.6e-11 4.1e-10 30.1 0.0 3 80 5 80 3 115 0.73 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_1 - 297 MipZ PF09140.6 261 4.3e-14 43.1 0.8 2 2 7.3e-06 0.00019 11.5 0.1 75 126 124 175 105 185 0.79 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_1 - 297 YhjQ PF06564.7 244 2.1e-12 37.8 0.2 1 1 2.4e-11 6.3e-10 29.8 0.2 7 151 8 181 1 185 0.68 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_10 - 114 SSB PF00436.20 104 9e-30 93.7 0.0 1 1 7.9e-31 1e-29 93.5 0.0 1 104 1 99 1 99 0.96 # 11264 # 11605 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 2_11 - 115 SSB PF00436.20 104 7.9e-24 74.6 0.0 1 1 6.9e-25 8.9e-24 74.4 0.0 1 104 1 99 1 99 0.94 # 5027 # 5371 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.432 1_3 - 309 AAA_22 PF13401.1 131 2.3e-11 35.0 0.0 1 1 4.3e-12 1.1e-10 32.8 0.0 6 124 43 225 38 233 0.90 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_1 - 297 ATP_bind_1 PF03029.12 238 1e-05 16.1 1.2 1 1 7.6e-07 2e-05 15.2 1.2 6 144 13 193 11 294 0.83 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_6 - 665 DNA_methylase PF00145.12 335 1.1e-80 262.2 3.9 1 3 4.5e-82 1.2e-80 262.1 0.3 2 334 4 323 3 324 0.84 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 DNA_methylase PF00145.12 335 1.1e-80 262.2 3.9 2 3 0.057 1.5 -1.2 0.0 2 25 360 383 359 390 0.87 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 DNA_methylase PF00145.12 335 1.1e-80 262.2 3.9 3 3 0.027 0.69 -0.1 0.2 200 274 422 518 377 535 0.55 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_1 - 297 SRP54 PF00448.17 196 0.00019 11.9 1.3 1 2 3.2e-05 0.00083 9.8 0.2 10 41 12 43 2 87 0.79 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_1 - 297 SRP54 PF00448.17 196 0.00019 11.9 1.3 2 2 0.025 0.64 0.4 0.1 65 90 130 154 113 158 0.73 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_3 - 309 KAP_NTPase PF07693.9 325 1.4e-32 103.9 0.1 1 1 3.1e-32 8e-31 98.1 0.1 19 254 40 264 28 272 0.71 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 AAA_17 PF13207.1 121 0.00016 13.5 0.0 1 1 3.6e-05 0.00095 11.0 0.0 2 105 44 199 43 237 0.50 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_1 - 297 ArsA_ATPase PF02374.10 305 6.3e-15 45.9 2.0 1 2 7.8e-16 2e-14 44.2 0.7 5 137 7 158 3 162 0.62 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_1 - 297 ArsA_ATPase PF02374.10 305 6.3e-15 45.9 2.0 2 2 0.037 0.95 -0.7 0.0 92 129 170 208 159 212 0.63 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_1 - 297 Fer4_NifH PF00142.13 273 1.9e-07 21.5 0.1 1 2 7.2e-09 1.9e-07 21.5 0.1 8 47 11 50 5 79 0.92 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_1 - 297 Fer4_NifH PF00142.13 273 1.9e-07 21.5 0.1 2 2 0.044 1.1 -0.8 0.3 154 154 182 182 134 290 0.60 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_3 - 309 Arch_ATPase PF01637.13 234 5.3e-08 23.8 0.1 1 1 1.8e-08 4.8e-07 20.7 0.1 24 162 45 223 21 237 0.67 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 AAA_16 PF13191.1 185 7.9e-06 17.0 0.0 1 1 4.1e-07 1.1e-05 16.5 0.0 4 163 23 198 20 221 0.70 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_1 - 297 CbiA PF01656.18 195 2.8e-35 112.4 0.1 1 1 1.6e-36 4.2e-35 111.9 0.1 3 192 7 249 5 252 0.81 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_3 - 309 KaiC PF06745.8 227 6.6e-05 13.1 0.5 1 2 0.00029 0.0076 6.3 0.4 21 38 43 60 39 160 0.93 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 KaiC PF06745.8 227 6.6e-05 13.1 0.5 2 2 0.0015 0.039 4.0 0.0 97 170 163 236 137 294 0.76 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 AAA_14 PF13173.1 128 3.2e-06 18.1 0.4 1 2 0.00033 0.0085 7.0 0.0 5 28 44 71 42 132 0.68 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 AAA_14 PF13173.1 128 3.2e-06 18.1 0.4 2 2 0.00012 0.0031 8.4 0.1 41 95 165 223 150 244 0.60 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 AAA PF00004.24 132 3.7e-05 15.0 0.2 1 1 4.3e-05 0.0011 10.2 0.2 38 74 165 201 44 237 0.68 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_1 - 297 AAA_31 PF13614.1 157 2.2e-11 34.9 3.3 1 1 3.8e-12 9.8e-11 32.8 1.2 9 152 11 181 4 186 0.84 # 1351 # 2241 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.377 1_6 - 665 Methyltransf_26 PF13659.1 117 3.3e-09 27.8 0.0 1 2 3.4e-07 8.9e-06 16.8 0.0 3 86 4 86 2 127 0.75 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 Methyltransf_26 PF13659.1 117 3.3e-09 27.8 0.0 2 2 0.00018 0.0047 8.0 0.0 4 85 361 562 358 578 0.50 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 Cons_hypoth95 PF03602.10 183 3.2e-10 30.7 0.0 1 3 3.4e-06 8.9e-05 12.9 0.0 45 124 4 80 2 100 0.89 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 Cons_hypoth95 PF03602.10 183 3.2e-10 30.7 0.0 2 3 0.00061 0.016 5.6 0.0 31 64 345 379 341 391 0.77 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 Cons_hypoth95 PF03602.10 183 3.2e-10 30.7 0.0 3 3 0.00013 0.0034 7.8 0.0 111 125 544 558 515 566 0.76 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_11 - 310 IPPT PF01715.12 253 0.0001 12.3 0.0 1 2 1.4e-05 0.00036 10.5 0.0 15 59 7 51 1 54 0.90 # 11624 # 12553 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.366 1_11 - 310 IPPT PF01715.12 253 0.0001 12.3 0.0 2 2 0.053 1.4 -1.2 0.0 176 191 113 128 72 162 0.72 # 11624 # 12553 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.366 1_10 - 114 tRNA_anti_2 PF13742.1 99 3.5e-06 17.9 0.0 1 1 3.8e-07 4.9e-06 17.4 0.0 32 86 15 77 10 85 0.80 # 11264 # 11605 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.424 2_11 - 115 tRNA_anti_2 PF13742.1 99 8e-05 13.5 0.0 1 1 8.4e-06 0.00011 13.1 0.0 41 84 26 75 5 78 0.77 # 5027 # 5371 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.432 1_6 - 665 MethyltransfD12 PF02086.10 260 7.5e-31 98.4 14.3 1 2 0.0023 0.06 3.7 0.2 24 77 5 61 2 70 0.78 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 MethyltransfD12 PF02086.10 260 7.5e-31 98.4 14.3 2 2 1e-31 2.7e-30 96.6 9.0 1 248 339 614 339 623 0.78 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_3 - 309 RNA_helicase PF00910.17 107 0.00014 13.1 0.2 1 2 5.4e-05 0.0014 9.8 0.1 2 82 45 121 44 144 0.72 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 RNA_helicase PF00910.17 107 0.00014 13.1 0.2 2 2 0.035 0.9 0.8 0.0 48 68 184 204 151 223 0.79 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 2_11 - 115 tRNA_anti-codon PF01336.20 75 0.00019 12.3 0.1 1 1 1.8e-05 0.00048 11.1 0.1 23 60 38 75 36 93 0.86 # 5027 # 5371 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.432 1_3 - 309 NACHT PF05729.7 166 0.00015 12.4 0.0 1 2 0.0017 0.044 4.4 0.0 3 20 44 61 43 77 0.85 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 309 NACHT PF05729.7 166 0.00015 12.4 0.0 2 2 0.00067 0.017 5.7 0.0 62 135 166 233 150 248 0.77 # 2641 # 3567 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.278 1_6 - 665 Methyltransf_15 PF09445.5 164 5.3e-08 23.6 3.8 1 3 1.4e-07 3.6e-06 17.6 0.7 4 84 5 84 2 175 0.86 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 Methyltransf_15 PF09445.5 164 5.3e-08 23.6 3.8 2 3 0.0027 0.071 3.6 0.0 3 36 360 393 358 403 0.72 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_6 - 665 Methyltransf_15 PF09445.5 164 5.3e-08 23.6 3.8 3 3 0.025 0.64 0.5 0.0 61 87 541 564 497 656 0.61 # 5322 # 7316 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f930d8b4-4a87-4428-a8fb-e81a93805bda # Target file: checkm_output/bins/pGCA_002176855.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002176855.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f930d8b4-4a87-4428-a8fb-e81a93805bda checkm_output/bins/pGCA_002176855.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:01 2020 # [ok]