# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_99 - 181 FeoB_N PF02421.13 156 0.00046 13.0 0.3 1 2 0.00024 0.036 6.8 0.1 2 22 5 25 4 30 0.89 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 FeoB_N PF02421.13 156 0.00046 13.0 0.3 2 2 0.0015 0.22 4.3 0.0 41 68 77 104 55 116 0.75 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_65 - 529 Terminase_6 PF03237.10 384 1.2e-14 47.3 0.0 1 1 1.4e-16 2.2e-14 46.5 0.0 5 305 73 393 71 400 0.82 # 40417 # 42003 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.406 1_99 - 181 IstB_IS21 PF01695.12 178 0.00022 14.2 0.3 1 2 1.3e-05 0.002 11.1 0.1 47 67 3 23 1 31 0.86 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 IstB_IS21 PF01695.12 178 0.00022 14.2 0.3 2 2 0.016 2.4 1.0 0.0 100 125 74 99 69 120 0.81 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 CoaE PF01121.15 180 0.00069 12.5 0.0 1 1 9.3e-06 0.0014 11.5 0.0 4 30 7 33 4 49 0.91 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_127 - 334 AAA_22 PF13401.1 131 6.5e-08 26.3 0.7 1 1 1.5e-08 5.5e-07 23.3 0.7 6 125 33 200 28 207 0.73 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_105 - 223 AAA_22 PF13401.1 131 5.4e-07 23.3 0.3 1 1 1.1e-07 4.1e-06 20.5 0.3 5 123 31 172 27 178 0.61 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_99 - 181 AAA_22 PF13401.1 131 0.00011 15.9 0.1 1 1 5.6e-06 0.00021 14.9 0.1 6 26 5 25 2 42 0.89 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_122 - 308 AAA_22 PF13401.1 131 0.00021 15.0 0.4 1 1 4.6e-05 0.0018 12.0 0.4 9 121 35 188 28 192 0.59 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_118 - 211 tRNA_anti-like PF12869.2 144 0.0056 9.7 6.0 1 1 0.00019 0.029 7.4 5.2 5 126 9 142 1 155 0.72 # 86209 # 86841 # 1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_99 - 181 SRP54 PF00448.17 196 0.00045 13.2 0.9 1 2 1.9e-05 0.0029 10.6 0.5 3 22 5 24 3 30 0.87 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 SRP54 PF00448.17 196 0.00045 13.2 0.9 2 2 0.022 3.3 0.6 0.0 77 96 76 95 63 117 0.79 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_122 - 308 AAA_15 PF13175.1 415 4.2e-06 19.5 0.0 1 2 0.0067 1 1.7 0.2 28 43 36 68 12 135 0.61 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_122 - 308 AAA_15 PF13175.1 415 4.2e-06 19.5 0.0 2 2 5.5e-07 8.4e-05 15.2 0.0 372 410 153 191 142 192 0.92 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_99 - 181 AAA_17 PF13207.1 121 1.7e-09 32.1 0.2 1 1 1.8e-11 2.8e-09 31.4 0.2 3 110 7 123 5 165 0.58 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_122 - 308 AAA_21 PF13304.1 303 1.2e-18 61.5 0.1 1 2 5.5e-05 0.0042 10.5 0.2 3 19 34 50 32 59 0.88 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_122 - 308 AAA_21 PF13304.1 303 1.2e-18 61.5 0.1 2 2 1.1e-16 8e-15 49.0 0.0 164 298 82 192 64 197 0.88 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_127 - 334 AAA_21 PF13304.1 303 1.7e-11 38.0 0.2 1 2 0.001 0.076 6.4 0.1 5 22 37 54 33 72 0.85 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_127 - 334 AAA_21 PF13304.1 303 1.7e-11 38.0 0.2 2 2 1e-10 7.6e-09 29.4 0.0 191 299 106 201 69 205 0.76 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_122 - 308 MobB PF03205.9 140 0.00054 13.2 0.1 1 1 3.2e-05 0.0016 11.6 0.1 2 23 32 53 31 75 0.85 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_127 - 334 MobB PF03205.9 140 0.00097 12.4 0.1 1 1 5.7e-05 0.0029 10.8 0.0 2 20 33 51 32 61 0.85 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_99 - 181 MobB PF03205.9 140 0.0016 11.6 0.4 1 1 6.5e-05 0.0033 10.6 0.4 3 20 6 23 4 30 0.85 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_105 - 223 PhoH PF02562.11 205 2.5e-36 118.3 0.0 1 1 2e-38 3.1e-36 118.0 0.0 5 196 16 213 14 220 0.90 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_65 - 529 Terminase_1 PF03354.10 477 0.00069 11.5 0.0 1 2 1.4e-05 0.0022 9.9 0.0 25 137 68 179 64 193 0.66 # 40417 # 42003 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.406 1_65 - 529 Terminase_1 PF03354.10 477 0.00069 11.5 0.0 2 2 0.045 6.8 -1.6 0.0 229 273 257 301 239 320 0.82 # 40417 # 42003 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.406 1_122 - 308 Zeta_toxin PF06414.7 201 0.00041 12.9 0.0 1 1 6.1e-06 0.00093 11.8 0.0 23 98 37 116 33 124 0.72 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_127 - 334 SMC_N PF02463.14 220 1.5e-08 27.6 0.6 1 1 1.3e-09 9.7e-08 25.0 0.6 26 208 33 210 19 220 0.74 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_122 - 308 SMC_N PF02463.14 220 0.0002 14.1 0.1 1 2 0.0027 0.2 4.3 0.1 29 44 35 50 7 61 0.81 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_122 - 308 SMC_N PF02463.14 220 0.0002 14.1 0.1 2 2 0.00025 0.019 7.6 0.0 160 210 152 204 67 212 0.85 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_127 - 334 AAA_16 PF13191.1 185 0.00025 14.6 0.2 1 1 1.5e-05 0.00078 12.9 0.2 27 52 34 59 26 197 0.70 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_99 - 181 AAA_16 PF13191.1 185 0.00026 14.5 0.2 1 1 9.6e-06 0.00049 13.6 0.1 26 46 5 25 3 38 0.90 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 632 AAA_16 PF13191.1 185 0.0011 12.4 0.0 1 1 0.00012 0.0063 10.0 0.0 1 51 68 122 68 162 0.78 # 3687 # 5582 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_122 - 308 AAA_23 PF13476.1 202 2.6e-05 18.1 5.4 1 1 1.5e-06 7.7e-05 16.6 5.4 4 65 14 79 5 305 0.70 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_59 - 215 AAA_23 PF13476.1 202 0.00032 14.5 14.0 1 1 7.4e-06 0.00038 14.3 14.0 87 199 51 181 8 189 0.59 # 36493 # 37137 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_43 - 120 AAA_23 PF13476.1 202 0.0058 10.4 7.4 1 1 0.00013 0.0064 10.3 7.4 99 179 16 93 5 118 0.69 # 27027 # 27386 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.372 1_99 - 181 AAA_18 PF13238.1 129 3e-10 34.0 0.7 1 1 9.9e-12 7.5e-10 32.7 0.5 2 113 7 125 6 140 0.70 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_105 - 223 AAA_18 PF13238.1 129 0.00053 13.8 0.0 1 1 2.1e-05 0.0016 12.2 0.0 3 69 35 116 34 183 0.76 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_105 - 223 CbiA PF01656.18 195 0.00096 12.1 0.3 1 1 2.5e-05 0.0019 11.1 0.2 1 23 32 54 32 59 0.85 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_99 - 181 CbiA PF01656.18 195 0.012 8.5 3.3 1 2 0.00033 0.025 7.4 1.5 6 17 10 21 7 24 0.87 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 CbiA PF01656.18 195 0.012 8.5 3.3 2 2 0.033 2.5 0.9 0.0 96 141 84 128 52 172 0.61 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_61 - 186 KaiC PF06745.8 227 6.9e-05 15.5 0.2 1 2 2.1e-06 0.00031 13.4 0.1 24 80 21 75 15 124 0.79 # 37544 # 38101 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_61 - 186 KaiC PF06745.8 227 6.9e-05 15.5 0.2 2 2 0.017 2.7 0.5 0.0 140 181 107 147 101 160 0.81 # 37544 # 38101 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_105 - 223 AAA_14 PF13173.1 128 9.5e-06 19.1 0.0 1 1 5.9e-07 9e-05 15.9 0.0 33 115 108 189 29 196 0.73 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_126 - 67 CSD PF00313.17 66 8.3e-33 105.6 2.7 1 1 5.9e-35 8.9e-33 105.5 2.7 2 65 3 65 2 66 0.97 # 93638 # 93838 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_127 - 334 AAA_29 PF13555.1 62 0.00018 14.5 0.0 1 1 8.9e-06 0.00034 13.7 0.0 16 41 25 49 19 63 0.78 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_122 - 308 AAA_29 PF13555.1 62 0.0011 12.1 0.0 1 1 5.8e-05 0.0022 11.0 0.0 16 40 24 47 19 51 0.81 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_6 - 632 AAA_29 PF13555.1 62 0.0016 11.5 0.0 1 1 8.9e-05 0.0034 10.5 0.0 12 40 84 112 78 116 0.84 # 3687 # 5582 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_99 - 181 AAA_29 PF13555.1 62 0.0018 11.4 0.5 1 1 9e-05 0.0034 10.4 0.5 24 39 4 19 1 21 0.85 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_122 - 308 AAA PF00004.24 132 1.6e-05 18.6 0.3 1 1 1e-06 5.2e-05 17.0 0.3 3 50 35 83 33 158 0.79 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_99 - 181 AAA PF00004.24 132 0.00011 15.9 0.9 1 1 5.9e-06 0.0003 14.5 0.9 1 21 6 26 6 174 0.68 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_105 - 223 AAA PF00004.24 132 0.00076 13.2 0.0 1 2 0.0011 0.057 7.1 0.0 7 23 39 55 34 75 0.82 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_105 - 223 AAA PF00004.24 132 0.00076 13.2 0.0 2 2 0.012 0.63 3.8 0.0 50 107 131 172 126 191 0.63 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_6 - 632 Sigma54_activat PF00158.21 168 0.00025 14.1 0.0 1 1 5.6e-06 0.00085 12.3 0.0 86 167 240 320 228 321 0.93 # 3687 # 5582 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_99 - 181 MMR_HSR1 PF01926.18 116 7.9e-07 22.6 0.0 1 1 7.4e-09 1.1e-06 22.1 0.0 2 88 6 111 5 172 0.66 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_56 - 163 KOW PF00467.24 32 0.00011 15.4 1.3 1 2 0.015 2.2 1.8 0.1 1 8 7 14 7 15 0.86 # 34719 # 35207 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 1_56 - 163 KOW PF00467.24 32 0.00011 15.4 1.3 2 2 7.4e-06 0.0011 12.2 0.1 14 29 26 47 23 50 0.84 # 34719 # 35207 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 1_99 - 181 DUF258 PF03193.11 161 7.5e-06 18.7 0.2 1 1 2e-07 1e-05 18.3 0.2 35 59 3 27 1 109 0.87 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_122 - 308 DUF258 PF03193.11 161 0.00031 13.5 0.1 1 1 1.5e-05 0.00075 12.2 0.1 22 66 16 61 4 74 0.85 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_127 - 334 DUF258 PF03193.11 161 0.00054 12.7 0.1 1 1 1.8e-05 0.00092 11.9 0.1 30 56 25 52 7 86 0.79 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_99 - 181 NTPase_1 PF03266.10 168 0.00034 13.9 1.1 1 2 0.0001 0.015 8.5 0.5 2 21 6 25 5 45 0.86 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 NTPase_1 PF03266.10 168 0.00034 13.9 1.1 2 2 0.0033 0.5 3.5 0.0 81 110 68 97 60 108 0.79 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 AAA_33 PF13671.1 143 1.2e-05 18.7 0.0 1 1 7.4e-07 3.8e-05 17.1 0.0 4 43 8 46 6 81 0.86 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_61 - 186 AAA_33 PF13671.1 143 0.00091 12.6 0.0 1 1 2.2e-05 0.0011 12.3 0.0 7 96 24 118 18 130 0.68 # 37544 # 38101 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_122 - 308 AAA_33 PF13671.1 143 0.00093 12.6 0.1 1 1 7.3e-05 0.0037 10.6 0.1 4 22 35 53 32 204 0.73 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_98 - 447 DnaB_C PF03796.10 259 2.3e-20 66.0 0.4 1 1 3.1e-22 4.7e-20 65.0 0.0 9 254 201 443 194 446 0.81 # 72166 # 73506 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.395 1_105 - 223 AAA_30 PF13604.1 196 4.2e-10 33.0 0.0 1 1 3.6e-11 2.7e-09 30.3 0.0 1 132 15 176 15 179 0.77 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_99 - 181 AAA_30 PF13604.1 196 0.0005 13.2 0.0 1 2 5.9e-05 0.0045 10.0 0.1 21 40 6 25 1 34 0.85 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 AAA_30 PF13604.1 196 0.0005 13.2 0.0 2 2 0.045 3.4 0.6 0.0 87 104 76 93 58 96 0.81 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_126 - 67 OB_RNB PF08206.6 58 3.5e-06 20.0 0.4 1 1 3.2e-08 4.9e-06 19.5 0.4 6 29 11 33 4 35 0.83 # 93638 # 93838 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_127 - 334 ABC_tran PF00005.22 137 3.8e-34 111.4 0.0 1 1 1.6e-35 8e-34 110.4 0.0 1 137 21 169 21 169 0.92 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_122 - 308 ABC_tran PF00005.22 137 6.6e-32 104.2 0.1 1 1 3e-33 1.5e-31 103.0 0.0 2 137 21 161 20 161 0.95 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_99 - 181 ABC_tran PF00005.22 137 0.00065 13.5 1.0 1 1 1.6e-05 0.00083 13.2 1.0 12 31 4 23 2 140 0.92 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 TIGR03263 TIGR03263 180 1e-12 41.2 0.1 1 1 9.3e-15 1.4e-12 40.8 0.1 4 177 6 166 3 171 0.75 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_105 - 223 AAA_19 PF13245.1 76 1.2e-05 18.5 0.0 1 1 2.7e-07 2e-05 17.8 0.0 3 41 24 58 22 71 0.78 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_99 - 181 AAA_19 PF13245.1 76 0.0017 11.7 0.0 1 1 4.1e-05 0.0031 10.8 0.0 13 31 6 23 2 40 0.85 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_122 - 308 AAA_10 PF12846.2 304 1e-09 31.7 0.2 1 2 6.5e-06 0.00049 13.0 0.2 6 44 35 75 31 114 0.82 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_122 - 308 AAA_10 PF12846.2 304 1e-09 31.7 0.2 2 2 3.3e-07 2.5e-05 17.3 0.0 215 267 145 197 68 210 0.73 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_127 - 334 AAA_10 PF12846.2 304 7.9e-07 22.2 0.2 1 2 0.00065 0.049 6.5 0.2 6 23 36 54 33 69 0.80 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_127 - 334 AAA_10 PF12846.2 304 7.9e-07 22.2 0.2 2 2 5.4e-06 0.00041 13.3 0.0 216 264 154 202 127 240 0.89 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_127 - 334 SbcCD_C PF13558.1 90 8.7e-05 15.9 0.1 1 1 9.2e-06 0.0007 13.0 0.1 61 89 156 184 128 185 0.80 # 94354 # 95355 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_122 - 308 SbcCD_C PF13558.1 90 0.00047 13.6 0.0 1 1 1.4e-05 0.001 12.5 0.0 49 89 136 176 132 177 0.81 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_98 - 447 UN_NPL4 PF11543.3 80 0.00026 14.8 0.6 1 2 0.0011 0.16 5.8 0.1 3 77 253 326 251 329 0.73 # 72166 # 73506 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.395 1_98 - 447 UN_NPL4 PF11543.3 80 0.00026 14.8 0.6 2 2 0.00081 0.12 6.2 0.0 8 40 331 364 329 373 0.87 # 72166 # 73506 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.395 1_85 - 101 RRF PF01765.14 165 0.00031 13.7 5.9 1 1 2.4e-06 0.00036 13.5 5.9 91 162 29 100 21 100 0.95 # 64692 # 64994 # 1 # ID=1_85;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_105 - 223 DUF2075 PF09848.4 352 1.5e-06 20.9 0.0 1 1 1.6e-08 2.4e-06 20.2 0.0 2 166 31 212 30 220 0.57 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_99 - 181 PduV-EutP PF10662.4 143 0.00026 14.0 0.4 1 1 3.1e-06 0.00046 13.2 0.1 2 24 4 26 2 40 0.85 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_105 - 223 DEAD PF00270.24 169 0.00013 15.0 0.3 1 1 2.2e-05 0.0033 10.4 0.3 1 35 17 51 17 174 0.69 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_2 - 158 SpoU_methylase PF00588.14 142 9.3e-37 119.6 0.0 1 1 6.9e-39 1e-36 119.4 0.0 2 142 3 145 2 145 0.87 # 666 # 1139 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_105 - 223 AAA_11 PF13086.1 236 0.00039 13.5 0.1 1 2 9.3e-05 0.0071 9.4 0.0 2 41 16 54 15 111 0.77 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_105 - 223 AAA_11 PF13086.1 236 0.00039 13.5 0.1 2 2 0.015 1.2 2.1 0.0 185 208 131 154 124 176 0.69 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_122 - 308 AAA_11 PF13086.1 236 0.00073 12.6 0.1 1 1 2e-05 0.0015 11.6 0.1 22 117 35 139 23 262 0.55 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_99 - 181 Guanylate_kin PF00625.16 183 2.2e-11 37.0 0.2 1 1 2.5e-13 3.8e-11 36.2 0.2 2 179 3 166 2 171 0.78 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 632 AAA_PrkA PF08298.6 358 4.2e-159 522.4 0.1 1 1 6e-161 9.1e-159 521.3 0.1 2 358 22 371 21 371 0.99 # 3687 # 5582 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_70 - 133 Ribosomal_L17 PF01196.14 97 0.0011 13.1 0.1 1 1 1.1e-05 0.0017 12.4 0.1 14 67 68 126 58 130 0.80 # 45992 # 46390 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_88 - 122 CIDE-N PF02017.10 78 0.0011 12.3 0.7 1 1 1.8e-05 0.0028 11.0 0.3 32 61 60 89 45 107 0.86 # 66473 # 66838 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.331 1_99 - 181 RNA_helicase PF00910.17 107 0.00044 13.9 0.0 1 1 5.4e-06 0.00082 13.1 0.0 1 21 6 26 6 54 0.79 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_122 - 308 UPF0079 PF02367.12 123 0.00034 13.7 0.1 1 1 3.9e-06 0.0006 13.0 0.1 11 45 26 61 16 83 0.83 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_106 - 182 Terminase_GpA PF05876.7 557 0.00029 12.7 1.9 1 1 1.9e-06 0.00028 12.8 1.0 200 242 111 163 93 171 0.82 # 77043 # 77588 # -1 # ID=1_106;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.399 1_108 - 334 AAA_24 PF13479.1 213 2.2e-13 43.8 0.0 1 1 4.4e-15 3.3e-13 43.2 0.0 4 141 19 170 16 226 0.74 # 78181 # 79182 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_99 - 181 AAA_24 PF13479.1 213 0.00024 14.2 0.0 1 1 4.1e-06 0.00031 13.8 0.0 5 29 5 29 2 94 0.83 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_105 - 223 UvrD-helicase PF00580.16 315 4.5e-05 16.3 0.0 1 2 4.7e-06 0.00072 12.4 0.0 1 29 16 46 16 66 0.80 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_105 - 223 UvrD-helicase PF00580.16 315 4.5e-05 16.3 0.0 2 2 0.006 0.91 2.2 0.0 247 294 129 176 75 177 0.69 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_99 - 181 NACHT PF05729.7 166 0.00024 14.3 0.2 1 1 7.4e-06 0.0011 12.1 0.6 2 21 5 24 4 27 0.90 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_98 - 447 AAA_25 PF13481.1 194 2.8e-10 33.4 0.0 1 1 2.7e-11 1.4e-09 31.1 0.0 14 151 193 330 181 371 0.65 # 72166 # 73506 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.395 1_105 - 223 AAA_25 PF13481.1 194 0.00019 14.4 0.0 1 1 7e-06 0.00035 13.5 0.0 22 157 20 153 14 174 0.63 # 76344 # 77012 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.404 1_122 - 308 AAA_25 PF13481.1 194 0.00045 13.1 0.4 1 1 0.00019 0.0095 8.8 0.1 30 90 27 79 11 194 0.55 # 90374 # 91297 # 1 # ID=1_122;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_99 - 181 AAA_28 PF13521.1 163 7.4e-06 19.5 0.0 1 1 8e-08 1.2e-05 18.8 0.0 3 33 7 37 5 93 0.78 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 AAA_5 PF07728.9 139 5.5e-05 16.4 0.0 1 1 8.1e-07 0.00012 15.3 0.0 2 21 6 25 5 35 0.92 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_99 - 181 APS_kinase PF01583.15 157 0.00071 12.7 0.1 1 1 1.1e-05 0.0016 11.6 0.1 4 25 5 26 2 35 0.87 # 73499 # 74041 # -1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/09bc086e-0930-465d-85e9-7e6b069e47c8 # Target file: checkm_output/bins/pGCA_002174255.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002174255.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/09bc086e-0930-465d-85e9-7e6b069e47c8 checkm_output/bins/pGCA_002174255.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:49:01 2020 # [ok]