# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 342 Saccharop_dh PF03435.13 386 7e-06 16.2 0.1 1 1 4.5e-07 1.2e-05 15.4 0.1 1 75 18 93 18 100 0.90 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 NmrA PF05368.8 233 4.5e-08 23.6 0.1 1 1 2e-09 5.5e-08 23.3 0.1 1 103 18 136 18 251 0.80 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_15 - 188 tRNA_anti-like PF12869.2 144 2.3e-05 15.0 0.3 1 2 0.023 0.62 0.6 0.4 1 31 1 37 1 42 0.41 # 7880 # 8443 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.429 1_15 - 188 tRNA_anti-like PF12869.2 144 2.3e-05 15.0 0.3 2 2 8.5e-07 2.3e-05 15.0 0.3 74 139 30 97 24 101 0.88 # 7880 # 8443 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.429 1_19 - 342 Semialdhyde_dh PF01118.19 121 7.2e-06 17.4 0.0 1 1 6.1e-07 1.6e-05 16.3 0.0 2 75 18 94 17 103 0.69 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 Shikimate_DH PF01488.15 135 4e-05 14.8 0.0 1 1 3.7e-06 0.0001 13.5 0.0 9 88 12 98 4 146 0.78 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 F420_oxidored PF03807.12 96 0.00015 13.3 0.0 1 1 1.7e-05 0.00046 11.7 0.0 6 73 23 97 17 103 0.80 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 adh_short PF00106.20 167 1.8e-12 38.5 0.1 1 1 1e-13 2.8e-12 37.9 0.1 1 143 16 144 16 150 0.83 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 Polysacc_synt_2 PF02719.10 294 2.3e-99 322.9 0.0 1 1 1e-100 2.7e-99 322.7 0.0 1 291 18 296 18 299 0.95 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 KR PF08659.5 181 3.9e-07 20.9 0.1 1 1 2e-08 5.4e-07 20.5 0.1 2 93 17 97 16 175 0.85 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_8 - 312 Sigma54_activat PF00158.21 168 5e-25 79.0 0.5 1 1 3.1e-24 8.3e-23 71.7 0.5 15 165 2 125 1 128 0.91 # 3557 # 4492 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.462 1_19 - 342 NAD_binding_4 PF07993.7 249 7.9e-12 35.6 0.3 1 2 2.5e-12 6.7e-11 32.6 0.3 1 143 20 145 20 169 0.77 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 NAD_binding_4 PF07993.7 249 7.9e-12 35.6 0.3 2 2 0.0075 0.2 1.5 0.0 166 200 144 181 138 224 0.69 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 RmlD_sub_bind PF04321.12 287 2.2e-15 47.3 0.0 1 1 2.1e-15 5.7e-14 42.6 0.0 2 140 17 161 16 221 0.81 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 NAD_binding_10 PF13460.1 183 1.6e-11 35.6 0.0 1 1 7.2e-13 2e-11 35.3 0.0 1 100 18 138 18 224 0.79 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 3Beta_HSD PF01073.14 280 1.6e-22 70.5 0.3 1 1 7.6e-23 2e-21 66.9 0.3 1 123 19 143 19 213 0.91 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_19 - 342 Epimerase PF01370.16 236 4.5e-28 89.3 0.0 1 1 2.2e-28 5.9e-27 85.6 0.0 1 219 18 221 18 233 0.88 # 10060 # 11085 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_8 - 312 Sigma54_activ_2 PF14532.1 138 4.1e-21 66.5 0.0 1 2 1.5e-21 4.2e-20 63.3 0.0 16 138 4 132 2 132 0.91 # 3557 # 4492 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.462 1_8 - 312 Sigma54_activ_2 PF14532.1 138 4.1e-21 66.5 0.0 2 2 0.027 0.73 1.0 0.0 65 129 184 250 167 259 0.67 # 3557 # 4492 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.462 1_26 - 190 H2TH PF06831.9 93 0.00019 12.3 0.0 1 2 0.02 0.55 1.2 0.0 29 54 11 35 5 43 0.80 # 16088 # 16657 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.475 1_26 - 190 H2TH PF06831.9 93 0.00019 12.3 0.0 2 2 9.7e-05 0.0026 8.6 0.0 21 59 117 155 98 161 0.80 # 16088 # 16657 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.475 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/298e0b56-a2ff-4d5f-ab26-ca34e98de0e9 # Target file: checkm_output/bins/pGCA_002173635.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002173635.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/298e0b56-a2ff-4d5f-ab26-ca34e98de0e9 checkm_output/bins/pGCA_002173635.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:56 2020 # [ok]