# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 217 MipZ PF09140.6 261 2.3e-11 34.6 0.1 1 1 1.5e-11 5.3e-10 30.2 0.1 2 109 3 111 2 123 0.72 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_22 - 217 YhjQ PF06564.7 244 7.6e-08 23.4 1.0 1 2 1.6e-06 5.6e-05 14.0 0.2 1 45 1 46 1 61 0.81 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_22 - 217 YhjQ PF06564.7 244 7.6e-08 23.4 1.0 2 2 8.9e-05 0.0032 8.2 0.1 98 234 60 199 43 209 0.75 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_11 - 511 DUF87 PF01935.12 229 1.1e-05 16.8 0.0 1 1 5.1e-07 1.8e-05 16.1 0.0 23 68 124 168 113 196 0.88 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 AAA_22 PF13401.1 131 0.00013 13.6 0.1 1 1 2.8e-05 0.001 10.7 0.0 3 27 123 147 120 168 0.86 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_22 - 217 AAA_17 PF13207.1 121 0.00024 13.4 0.0 1 1 9.1e-06 0.00033 13.0 0.0 9 66 12 76 11 192 0.72 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_11 - 511 MobB PF03205.9 140 7.4e-05 14.0 0.0 1 1 1e-05 0.00019 12.6 0.0 3 33 127 157 125 163 0.90 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_22 - 217 MobB PF03205.9 140 0.0002 12.5 0.0 1 1 1.9e-05 0.00035 11.8 0.0 10 44 12 45 2 85 0.86 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_22 - 217 ArsA_ATPase PF02374.10 305 4.5e-08 23.8 0.1 1 1 4.8e-09 8.6e-08 22.9 0.0 4 56 5 58 1 74 0.82 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_13 - 235 ArsA_ATPase PF02374.10 305 0.00016 12.2 0.0 1 1 1.2e-05 0.00022 11.8 0.0 4 38 14 49 11 105 0.90 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_11 - 511 T2SE PF00437.15 272 2.9e-06 17.7 0.3 1 1 1.5e-07 5.5e-06 16.9 0.1 128 161 124 157 86 161 0.87 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_22 - 217 Methyltransf_24 PF13578.1 106 8.5e-06 18.1 0.1 1 1 8.4e-07 3e-05 16.3 0.0 7 93 13 102 11 106 0.78 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_22 - 217 VirC1 PF07015.6 231 8.2e-11 32.8 0.1 1 1 5.8e-12 1e-10 32.5 0.1 1 157 1 147 1 199 0.75 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_13 - 235 VirC1 PF07015.6 231 0.00024 11.7 0.0 1 1 1.9e-05 0.00033 11.2 0.0 9 51 19 60 12 118 0.79 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_13 - 235 AAA_16 PF13191.1 185 1.1e-05 16.9 0.0 1 1 9.9e-07 1.8e-05 16.2 0.0 33 103 21 91 5 226 0.75 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_11 - 511 AAA_16 PF13191.1 185 0.00025 12.5 0.1 1 1 4.5e-05 0.0008 10.9 0.0 20 56 120 157 103 168 0.85 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_22 - 217 CbiA PF01656.18 195 3.9e-23 73.3 0.1 1 1 2.9e-24 5.2e-23 72.9 0.1 2 164 5 143 4 172 0.78 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_13 - 235 CbiA PF01656.18 195 1.5e-07 22.4 0.1 1 2 4.1e-08 7.4e-07 20.2 0.0 3 44 16 55 14 106 0.77 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_13 - 235 CbiA PF01656.18 195 1.5e-07 22.4 0.1 2 2 0.054 0.97 0.2 0.0 120 172 89 143 65 163 0.62 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_11 - 511 TraG-D_C PF12696.2 128 6.4e-29 91.9 1.1 1 1 2.5e-30 9.1e-29 91.4 0.2 3 126 352 472 350 474 0.89 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_22 - 217 AAA_31 PF13614.1 157 1.1e-10 33.2 0.0 1 2 8.9e-08 1.6e-06 19.6 0.0 1 43 2 45 2 53 0.89 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_22 - 217 AAA_31 PF13614.1 157 1.1e-10 33.2 0.0 2 2 2.4e-05 0.00042 11.7 0.0 111 153 71 113 52 117 0.89 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_13 - 235 AAA_31 PF13614.1 157 1.9e-06 19.3 0.0 1 1 7.8e-07 1.4e-05 16.5 0.0 1 48 12 59 12 143 0.90 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_11 - 511 FtsK_SpoIIIE PF01580.13 205 0.00014 12.8 0.0 1 1 8.2e-06 0.0003 11.8 0.0 39 62 123 148 99 165 0.79 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 1 11 0.011 0.2 3.0 0.0 22 51 306 337 303 347 0.74 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 2 11 0.0052 0.094 4.0 0.0 22 52 340 372 337 381 0.78 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 3 11 0.022 0.39 2.1 0.0 22 49 374 403 373 414 0.72 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 4 11 0.0055 0.099 4.0 0.0 22 52 408 440 406 449 0.77 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 5 11 0.018 0.32 2.3 0.0 22 50 442 472 439 483 0.72 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 6 11 0.017 0.31 2.4 0.0 22 50 476 506 472 517 0.73 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 7 11 0.0089 0.16 3.3 0.0 22 52 510 542 506 551 0.78 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 8 11 0.01 0.19 3.1 0.0 22 51 544 575 540 585 0.74 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 9 11 0.01 0.19 3.1 0.0 22 58 578 614 574 619 0.73 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 10 11 0.01 0.19 3.1 0.0 22 50 612 642 607 652 0.75 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 2_1 - 681 RBD PF02196.10 71 9.3e-12 36.1 7.2 11 11 0.016 0.3 2.5 0.0 22 46 646 670 642 680 0.75 # 3 # 2045 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 4_1 - 87 RBD PF02196.10 71 1.7e-05 16.1 0.1 1 2 0.00015 0.0027 9.0 0.0 22 52 18 50 14 59 0.78 # 2 # 262 # -1 # ID=4_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.678 4_1 - 87 RBD PF02196.10 71 1.7e-05 16.1 0.1 2 2 0.0008 0.014 6.7 0.0 22 50 52 82 49 86 0.75 # 2 # 262 # -1 # ID=4_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.678 1_17 - 273 TOBE PF03459.12 64 0.00022 12.8 0.2 1 1 1.8e-05 0.00065 11.3 0.1 7 54 210 253 207 257 0.91 # 13300 # 14118 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.624 1_11 - 511 AAA_10 PF12846.2 304 6.9e-17 53.2 0.1 1 1 1.9e-16 6.8e-15 46.6 0.1 2 300 125 429 124 432 0.69 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 ResIII PF04851.10 184 0.00041 11.7 0.1 1 1 2.2e-05 0.00078 10.7 0.1 5 51 104 149 101 160 0.75 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 DUF815 PF05673.8 250 0.00018 11.9 0.0 1 1 8.7e-06 0.00031 11.1 0.0 50 83 121 154 109 159 0.89 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 DUF853 PF05872.7 504 3.5e-05 13.7 0.1 1 1 1.6e-06 5.7e-05 13.0 0.1 13 59 116 162 108 176 0.85 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 TrwB_AAD_bind PF10412.4 386 2.2e-141 462.3 0.0 1 1 7.1e-143 2.5e-141 462.1 0.0 2 385 111 491 110 492 0.98 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 T4SS-DNA_transf PF02534.9 469 1.4e-23 74.5 0.0 1 2 0.00015 0.0054 6.7 0.0 44 167 121 235 84 261 0.70 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 T4SS-DNA_transf PF02534.9 469 1.4e-23 74.5 0.0 2 2 1.8e-22 6.6e-21 65.8 0.0 264 413 313 461 295 475 0.75 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_11 - 511 PIF1 PF05970.9 364 4.8e-05 13.8 0.1 1 1 2.1e-06 7.4e-05 13.2 0.1 19 54 121 156 106 168 0.86 # 7240 # 8772 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_13 - 235 RNA_helicase PF00910.17 107 5e-05 15.0 0.0 1 2 1.3e-05 0.00049 11.8 0.0 2 49 14 61 13 72 0.79 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_13 - 235 RNA_helicase PF00910.17 107 5e-05 15.0 0.0 2 2 0.058 2.1 0.1 0.0 9 26 179 196 176 210 0.78 # 9390 # 10094 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_22 - 217 AAA_25 PF13481.1 194 9.1e-05 13.4 0.3 1 1 8.3e-06 0.0003 11.7 0.3 42 92 11 47 3 102 0.58 # 15997 # 16647 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bb0fae3b-be99-45b5-9c4e-55b31d8ee558 # Target file: checkm_output/bins/pGCA_002163775.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002163775.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bb0fae3b-be99-45b5-9c4e-55b31d8ee558 checkm_output/bins/pGCA_002163775.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:54 2020 # [ok]