# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 307 Mg_chelatase PF01078.16 207 0.0001 12.1 0.1 1 1 9.4e-06 0.00019 11.3 0.1 20 65 30 75 12 90 0.76 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_6 - 266 MipZ PF09140.6 261 6.4e-11 32.4 0.0 1 2 1.4e-08 2.8e-07 20.4 0.0 3 40 5 42 3 74 0.87 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 266 MipZ PF09140.6 261 6.4e-11 32.4 0.0 2 2 2.2e-05 0.00044 10.0 0.0 88 115 119 146 108 161 0.80 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 266 YhjQ PF06564.7 244 1.2e-07 21.9 0.0 1 1 1.9e-08 3.9e-07 20.2 0.0 6 154 6 166 1 171 0.73 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_14 - 307 NB-ARC PF00931.17 287 7.1e-06 15.6 1.1 1 2 8.4e-06 0.00017 11.1 0.6 6 37 19 50 14 58 0.90 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 NB-ARC PF00931.17 287 7.1e-06 15.6 1.1 2 2 0.0035 0.071 2.5 0.0 51 108 100 160 91 173 0.74 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_22 PF13401.1 131 7.1e-06 16.9 0.3 1 1 4.4e-06 8.7e-05 13.3 0.3 5 113 33 183 29 197 0.64 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 MutS_V PF00488.16 235 2.6e-05 14.3 0.6 1 2 7.2e-06 0.00014 11.9 0.1 24 62 14 51 3 58 0.84 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 MutS_V PF00488.16 235 2.6e-05 14.3 0.6 2 2 0.045 0.91 -0.6 0.0 124 181 155 211 125 249 0.60 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_6 - 266 SRP54 PF00448.17 196 4.6e-06 16.8 0.7 1 2 3e-06 6e-05 13.2 0.7 3 39 3 41 1 44 0.86 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 266 SRP54 PF00448.17 196 4.6e-06 16.8 0.7 2 2 0.014 0.28 1.2 0.0 68 92 115 138 101 149 0.75 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_14 - 307 AAA_15 PF13175.1 415 1.4e-06 18.2 15.7 1 3 2.3e-05 0.00046 9.8 3.9 6 43 16 70 14 144 0.68 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_15 PF13175.1 415 1.4e-06 18.2 15.7 2 3 2.3e-05 0.00046 9.9 0.0 365 410 152 193 135 195 0.88 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_15 PF13175.1 415 1.4e-06 18.2 15.7 3 3 0.03 0.6 -0.4 7.1 178 257 224 305 206 306 0.64 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_21 PF13304.1 303 3.3e-20 63.8 9.3 1 3 1.9e-08 3.7e-07 20.9 0.6 2 42 35 59 34 82 0.66 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_21 PF13304.1 303 3.3e-20 63.8 9.3 2 3 2.1e-16 4.1e-15 47.0 0.0 173 298 91 194 73 199 0.91 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_21 PF13304.1 303 3.3e-20 63.8 9.3 3 3 0.044 0.88 0.0 0.9 149 180 231 272 208 304 0.35 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 MobB PF03205.9 140 2.2e-05 14.9 0.3 1 1 8.2e-06 8.2e-05 13.0 0.1 3 30 35 62 33 71 0.84 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_6 - 266 MobB PF03205.9 140 0.00011 12.6 0.2 1 1 5.7e-05 0.00057 10.3 0.1 10 44 13 45 4 47 0.87 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 266 ArsA_ATPase PF02374.10 305 2.2e-09 27.3 0.3 1 3 5.6e-08 1.1e-06 18.4 0.0 9 50 11 52 3 73 0.89 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 266 ArsA_ATPase PF02374.10 305 2.2e-09 27.3 0.3 2 3 0.0029 0.057 3.0 0.1 124 136 127 139 116 142 0.82 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 266 ArsA_ATPase PF02374.10 305 2.2e-09 27.3 0.3 3 3 0.0039 0.077 2.5 0.0 111 139 203 232 170 263 0.77 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_14 - 307 SMC_N PF02463.14 220 1.9e-05 14.6 2.2 1 2 0.00013 0.0027 7.5 0.3 25 42 33 50 5 66 0.70 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 SMC_N PF02463.14 220 1.9e-05 14.6 2.2 2 2 0.00038 0.0077 6.1 0.0 153 213 148 209 99 215 0.72 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_6 - 266 Fer4_NifH PF00142.13 273 1.3e-06 18.3 0.1 1 1 1.4e-07 2.7e-06 17.3 0.1 8 65 11 72 5 79 0.80 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_14 - 307 AAA_16 PF13191.1 185 1.2e-05 16.0 0.3 1 1 2.8e-06 5.5e-05 13.8 0.3 22 58 30 67 19 196 0.73 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_23 PF13476.1 202 4.5e-05 14.5 8.8 1 1 1.5e-05 0.0003 11.8 8.8 8 54 20 74 7 306 0.53 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_6 - 266 CbiA PF01656.18 195 3e-31 98.9 0.0 1 1 2e-32 4.1e-31 98.5 0.0 4 176 8 216 5 230 0.70 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_14 - 307 AAA_14 PF13173.1 128 8.7e-05 13.1 3.1 1 2 0.0003 0.0059 7.2 0.1 2 22 32 52 31 69 0.85 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_14 PF13173.1 128 8.7e-05 13.1 3.1 2 2 0.00088 0.018 5.6 0.0 37 96 120 192 90 209 0.63 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_29 PF13555.1 62 2.1e-05 14.7 0.2 1 1 2e-06 4e-05 13.8 0.2 19 40 29 49 21 64 0.84 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA PF00004.24 132 1.3e-05 16.1 0.2 1 1 3.3e-06 6.6e-05 13.8 0.2 3 37 37 73 35 165 0.81 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 DUF258 PF03193.11 161 7.1e-07 19.2 0.7 1 1 7.2e-08 1.4e-06 18.2 0.7 12 68 8 65 1 86 0.87 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_6 - 266 AAA_31 PF13614.1 157 2.2e-12 37.8 1.0 1 2 1.6e-09 3.2e-08 24.3 0.0 9 93 11 88 10 94 0.76 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 266 AAA_31 PF13614.1 157 2.2e-12 37.8 1.0 2 2 1.4e-05 0.00028 11.5 0.1 111 145 123 156 119 162 0.75 # 7397 # 8194 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_14 - 307 AAA_33 PF13671.1 143 0.00023 11.7 0.1 1 2 4.2e-05 0.00084 9.9 0.1 4 20 37 53 34 181 0.89 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_33 PF13671.1 143 0.00023 11.7 0.1 2 2 0.065 1.3 -0.5 0.0 14 67 176 247 175 294 0.55 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_30 PF13604.1 196 9.2e-05 12.7 0.0 1 2 2e-05 0.00041 10.6 0.0 17 49 31 63 25 79 0.84 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_30 PF13604.1 196 9.2e-05 12.7 0.0 2 2 0.055 1.1 -0.6 0.0 67 102 110 162 102 190 0.69 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 DUF2813 PF11398.3 373 2.1e-05 14.3 2.0 1 2 0.00013 0.0026 7.4 0.3 8 50 16 60 13 66 0.83 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 DUF2813 PF11398.3 373 2.1e-05 14.3 2.0 2 2 0.00023 0.0046 6.6 0.1 281 365 149 236 89 244 0.66 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 ABC_tran PF00005.22 137 7e-36 114.2 0.1 1 1 6.3e-37 1.3e-35 113.4 0.1 2 137 23 164 22 164 0.96 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_19 PF13245.1 76 0.00013 12.4 0.0 1 1 1.8e-05 0.00037 10.9 0.0 11 35 33 56 25 66 0.81 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_10 PF12846.2 304 1.6e-05 15.0 0.1 1 2 0.00011 0.0021 8.0 0.3 5 40 36 73 33 117 0.75 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 AAA_10 PF12846.2 304 1.6e-05 15.0 0.1 2 2 0.0013 0.025 4.5 0.0 216 267 149 199 123 234 0.85 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 SbcCD_C PF13558.1 90 0.00014 12.4 0.0 1 1 1.4e-05 0.00027 11.5 0.0 52 89 142 179 135 180 0.78 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 Sigma54_activ_2 PF14532.1 138 7.8e-05 13.4 0.7 1 2 0.0092 0.18 2.5 0.0 23 48 34 59 12 91 0.73 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 Sigma54_activ_2 PF14532.1 138 7.8e-05 13.4 0.7 2 2 0.00015 0.003 8.2 0.1 72 127 216 270 210 280 0.90 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 ArgK PF03308.11 267 1.3e-05 14.6 0.4 1 2 1.7e-06 3.4e-05 13.3 0.1 11 62 14 65 4 78 0.83 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 ArgK PF03308.11 267 1.3e-05 14.6 0.4 2 2 0.081 1.6 -2.0 0.0 150 187 197 238 188 256 0.66 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 UPF0079 PF02367.12 123 1.6e-06 18.5 0.3 1 1 1.9e-07 3.8e-06 17.2 0.1 8 57 25 75 18 84 0.76 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 NACHT PF05729.7 166 1.3e-05 15.6 0.7 1 2 3.6e-05 0.00072 9.9 0.1 4 26 36 58 33 63 0.84 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_14 - 307 NACHT PF05729.7 166 1.3e-05 15.6 0.7 2 2 0.0021 0.041 4.2 0.0 64 128 125 193 95 238 0.59 # 11916 # 12836 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/06f66984-18c0-4214-8d07-c10fd5b47ca2 # Target file: checkm_output/bins/pGCA_002157855.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002157855.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/06f66984-18c0-4214-8d07-c10fd5b47ca2 checkm_output/bins/pGCA_002157855.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:50 2020 # [ok]