# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 197 Thymidylate_kin PF02223.12 186 0.00059 11.0 0.2 1 2 6.3e-05 0.0028 8.8 0.1 6 30 11 35 10 43 0.89 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_2 - 197 Thymidylate_kin PF02223.12 186 0.00059 11.0 0.2 2 2 0.045 2 -0.5 0.0 102 125 113 135 104 163 0.63 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_8 - 199 MipZ PF09140.6 261 3.6e-12 37.6 0.2 1 2 1.6e-09 3.5e-08 24.5 0.1 2 46 4 47 3 55 0.87 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 MipZ PF09140.6 261 3.6e-12 37.6 0.2 2 2 1.6e-05 0.00035 11.4 0.0 89 136 69 115 58 144 0.88 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_2 - 197 MipZ PF09140.6 261 1.2e-10 32.6 1.7 1 1 6.1e-11 1.4e-09 29.1 1.7 2 116 2 118 1 124 0.66 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_6 - 1483 UvrD_C_2 PF13538.1 104 4.7e-09 28.2 0.1 1 1 7.4e-10 1.7e-08 26.4 0.1 16 98 847 934 831 940 0.71 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 2_16 - 1117 UvrD_C_2 PF13538.1 104 2.4e-05 16.3 0.6 1 1 3.8e-06 8.6e-05 14.5 0.0 6 102 715 818 711 820 0.67 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_16 - 214 NmrA PF05368.8 233 2.4e-12 38.3 0.0 1 1 7.2e-14 3.2e-12 37.9 0.0 1 96 3 98 3 112 0.86 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_16 - 1117 AAA_22 PF13401.1 131 1.4e-05 17.1 0.3 1 1 7.7e-06 0.00017 13.5 0.0 8 126 466 579 460 584 0.77 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_6 - 1483 AAA_22 PF13401.1 131 9.5e-05 14.3 0.0 1 1 6.9e-05 0.0016 10.4 0.0 10 124 587 700 581 706 0.49 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_8 - 199 ATP_bind_1 PF03029.12 238 8.2e-05 14.0 0.0 1 3 0.00032 0.014 6.6 0.0 6 44 13 51 11 54 0.90 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 ATP_bind_1 PF03029.12 238 8.2e-05 14.0 0.0 2 3 0.092 4.1 -1.4 0.0 90 107 77 95 59 104 0.65 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 ATP_bind_1 PF03029.12 238 8.2e-05 14.0 0.0 3 3 0.0015 0.07 4.4 0.0 146 180 118 151 109 196 0.72 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 SRP54 PF00448.17 196 0.0002 12.6 0.1 1 1 1.6e-05 0.00036 11.7 0.2 10 43 12 45 3 86 0.79 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_2 - 197 SRP54 PF00448.17 196 0.00024 12.4 0.7 1 1 1.8e-05 0.0004 11.6 0.7 11 39 11 39 3 45 0.89 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_10 - 291 AAA_21 PF13304.1 303 1.3e-16 53.1 0.0 1 2 1e-07 4.7e-06 18.5 0.0 1 24 29 52 29 75 0.82 # 5361 # 6233 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 2_10 - 291 AAA_21 PF13304.1 303 1.3e-16 53.1 0.0 2 2 4.8e-12 2.2e-10 32.7 0.0 236 297 127 185 110 187 0.83 # 5361 # 6233 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_8 - 199 MobB PF03205.9 140 8.8e-06 17.3 0.1 1 1 1.2e-06 2.8e-05 15.6 0.1 7 36 10 38 4 47 0.82 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_2 - 197 MobB PF03205.9 140 0.00018 13.0 0.3 1 1 1.6e-05 0.00037 12.0 0.3 4 39 5 39 2 44 0.84 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_8 - 199 LpxK PF02606.9 326 6.8e-06 16.9 0.4 1 2 3.4e-07 1.5e-05 15.8 0.1 45 70 11 36 2 46 0.91 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 LpxK PF02606.9 326 6.8e-06 16.9 0.4 2 2 0.077 3.4 -1.8 0.0 91 106 149 164 124 178 0.70 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 ArsA_ATPase PF02374.10 305 3.2e-06 18.1 0.4 1 2 3.2e-06 7.2e-05 13.6 0.2 6 42 8 44 2 54 0.89 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 ArsA_ATPase PF02374.10 305 3.2e-06 18.1 0.4 2 2 0.0076 0.17 2.6 0.0 111 139 61 90 48 94 0.77 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_2 - 197 ArsA_ATPase PF02374.10 305 8.1e-06 16.8 0.8 1 1 4.9e-07 1.1e-05 16.3 0.8 6 38 6 38 1 42 0.87 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_16 - 1117 PhoH PF02562.11 205 1e-05 16.6 0.2 1 2 0.0023 0.11 3.5 0.1 7 34 448 477 444 512 0.73 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_16 - 1117 PhoH PF02562.11 205 1e-05 16.6 0.2 2 2 1.9e-05 0.00084 10.4 0.0 120 170 542 592 540 613 0.79 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_8 - 199 AAA_26 PF13500.1 199 7.4e-05 14.2 0.3 1 1 2e-06 9.1e-05 13.9 0.3 3 55 5 53 3 175 0.82 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_2 - 197 VirC1 PF07015.6 231 4.1e-11 34.1 0.1 1 1 2.9e-12 6.4e-11 33.5 0.1 3 120 2 115 1 167 0.90 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_8 - 199 VirC1 PF07015.6 231 3.8e-10 30.9 0.1 1 2 6e-07 1.3e-05 16.1 0.0 3 49 4 50 2 55 0.91 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 VirC1 PF07015.6 231 3.8e-10 30.9 0.1 2 2 4.8e-06 0.00011 13.1 0.0 85 132 79 126 71 172 0.86 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_2 - 197 Fer4_NifH PF00142.13 273 1.2e-05 16.4 0.2 1 1 7.3e-07 1.6e-05 15.9 0.2 3 36 4 37 2 43 0.89 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_8 - 199 Fer4_NifH PF00142.13 273 4.3e-05 14.5 0.0 1 1 3.4e-06 7.6e-05 13.7 0.0 5 45 8 48 3 66 0.91 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_16 - 1117 AAA_16 PF13191.1 185 0.0026 9.5 7.6 1 4 0.034 1.5 0.5 0.0 76 148 215 284 186 322 0.56 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_16 - 1117 AAA_16 PF13191.1 185 0.0026 9.5 7.6 2 4 5.5e-05 0.0025 9.6 0.0 15 55 453 493 449 524 0.85 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_16 - 1117 AAA_16 PF13191.1 185 0.0026 9.5 7.6 3 4 0.093 4.2 -0.9 0.2 67 141 890 957 866 1002 0.59 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_16 - 1117 AAA_16 PF13191.1 185 0.0026 9.5 7.6 4 4 0.086 3.9 -0.8 1.3 69 107 996 1043 946 1108 0.58 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_10 - 291 AAA_23 PF13476.1 202 4.6e-06 18.8 0.0 1 1 1.5e-07 6.6e-06 18.3 0.0 15 41 20 49 9 59 0.84 # 5361 # 6233 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_8 - 199 CbiA PF01656.18 195 8.4e-22 69.3 0.1 1 1 1.1e-22 2.5e-21 67.7 0.1 1 176 5 156 5 183 0.78 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_2 - 197 CbiA PF01656.18 195 1.3e-18 58.8 0.1 1 1 1.1e-19 2.4e-18 58.0 0.1 1 189 3 165 3 171 0.69 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_10 - 291 AAA_29 PF13555.1 62 1.7e-05 16.1 0.1 1 1 8.1e-07 3.7e-05 15.1 0.1 21 40 25 44 17 49 0.87 # 5361 # 6233 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 2_2 - 197 AAA_31 PF13614.1 157 2e-06 19.6 0.0 1 2 5.3e-07 1.2e-05 17.1 0.0 3 44 3 44 1 54 0.85 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_2 - 197 AAA_31 PF13614.1 157 2e-06 19.6 0.0 2 2 0.086 1.9 0.1 0.0 120 154 81 114 79 117 0.76 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_8 - 199 AAA_31 PF13614.1 157 5.2e-06 18.2 0.0 1 2 1.1e-05 0.00026 12.7 0.0 1 37 3 39 3 48 0.86 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 AAA_31 PF13614.1 157 5.2e-06 18.2 0.0 2 2 0.0078 0.18 3.5 0.0 119 154 79 113 61 116 0.86 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_16 - 1117 AAA_30 PF13604.1 196 3.4e-58 188.2 8.4 1 1 2.3e-59 3.5e-58 188.2 4.8 2 195 446 647 445 648 0.97 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_6 - 1483 AAA_30 PF13604.1 196 2.9e-57 185.1 0.0 1 1 2e-58 2.9e-57 185.1 0.0 1 194 564 766 564 768 0.96 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_8 - 199 AAA_30 PF13604.1 196 1.7e-05 16.2 0.3 1 1 2e-06 3e-05 15.4 0.3 19 52 4 37 1 50 0.91 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 2_10 - 291 ABC_tran PF00005.22 137 3.6e-25 80.7 0.0 1 1 1.2e-26 5.6e-25 80.0 0.0 2 137 18 156 17 156 0.93 # 5361 # 6233 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_6 - 1483 AAA_19 PF13245.1 76 7.1e-11 33.6 1.1 1 2 1.6e-08 2.4e-07 22.3 0.1 17 75 588 639 585 640 0.89 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_6 - 1483 AAA_19 PF13245.1 76 7.1e-11 33.6 1.1 2 2 0.00026 0.0039 8.8 0.1 29 63 774 812 768 824 0.77 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 2_16 - 1117 AAA_19 PF13245.1 76 2.7e-09 28.5 3.1 1 2 1.5e-08 2.3e-07 22.4 0.7 13 74 465 520 452 521 0.80 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_16 - 1117 AAA_19 PF13245.1 76 2.7e-09 28.5 3.1 2 2 0.0044 0.067 4.8 0.1 39 62 662 686 630 707 0.75 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_8 - 199 AAA_19 PF13245.1 76 0.00025 12.6 1.6 1 1 3.6e-05 0.00054 11.5 0.0 12 39 5 29 2 56 0.75 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_16 - 214 RmlD_sub_bind PF04321.12 287 2.4e-07 21.6 0.0 1 2 2.6e-08 1.2e-06 19.4 0.0 1 97 1 100 1 103 0.62 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_16 - 214 RmlD_sub_bind PF04321.12 287 2.4e-07 21.6 0.0 2 2 0.073 3.3 -1.8 0.0 216 233 185 202 181 208 0.82 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_16 - 214 NAD_binding_10 PF13460.1 183 1.2e-30 98.6 0.0 1 1 3.1e-32 1.4e-30 98.4 0.0 1 182 3 201 3 202 0.87 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_6 - 1483 Helicase_RecD PF05127.9 177 0.00023 12.6 0.4 1 1 2.2e-05 0.001 10.5 0.0 6 112 590 686 587 692 0.85 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 2_10 - 291 AAA_10 PF12846.2 304 0.00039 11.6 0.0 1 2 0.00043 0.019 6.1 0.1 5 22 31 48 27 80 0.82 # 5361 # 6233 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 2_10 - 291 AAA_10 PF12846.2 304 0.00039 11.6 0.0 2 2 0.0023 0.1 3.7 0.0 220 270 145 194 131 238 0.87 # 5361 # 6233 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_16 - 214 3Beta_HSD PF01073.14 280 7.3e-05 13.3 0.0 1 1 2.7e-06 0.00012 12.5 0.0 1 112 4 101 4 108 0.78 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_6 - 1483 Viral_helicase1 PF01443.13 234 2.2e-07 22.4 0.1 1 2 0.0025 0.11 3.7 0.0 61 103 663 707 588 730 0.81 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_6 - 1483 Viral_helicase1 PF01443.13 234 2.2e-07 22.4 0.1 2 2 5.5e-07 2.5e-05 15.6 0.3 161 233 876 940 838 941 0.74 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_16 - 214 Epimerase PF01370.16 236 4.6e-09 27.8 0.1 1 1 2.2e-10 1e-08 26.7 0.1 1 115 3 103 3 123 0.80 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_16 - 1117 AAA_11 PF13086.1 236 1.1e-10 33.2 2.8 1 2 0.00049 0.011 7.0 0.0 2 86 446 516 445 540 0.83 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 2_16 - 1117 AAA_11 PF13086.1 236 1.1e-10 33.2 2.8 2 2 3.9e-09 8.7e-08 23.7 0.0 194 231 543 583 539 586 0.90 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_6 - 1483 AAA_11 PF13086.1 236 3.3e-06 18.6 4.9 1 2 0.018 0.41 1.9 0.0 23 71 587 627 564 639 0.80 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_6 - 1483 AAA_11 PF13086.1 236 3.3e-06 18.6 4.9 2 2 2.4e-06 5.5e-05 14.6 0.0 192 232 664 707 652 708 0.75 # 3573 # 8021 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_8 - 199 ParA PF10609.4 81 0.00092 10.9 1.5 1 2 0.096 4.3 -0.8 0.0 11 44 13 51 7 56 0.58 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 ParA PF10609.4 81 0.00092 10.9 1.5 2 2 6.9e-05 0.0031 9.2 0.7 2 11 79 88 78 154 0.86 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_16 - 214 DapB_N PF01113.15 124 2.7e-05 15.9 0.1 1 1 1.2e-06 5.4e-05 14.9 0.1 1 79 1 75 1 107 0.70 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_16 - 1117 PIF1 PF05970.9 364 2.5e-05 15.1 0.0 1 1 1.1e-06 5.2e-05 14.0 0.0 27 116 467 555 445 612 0.80 # 10230 # 13580 # 1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_8 - 199 GTP_EFTU PF00009.22 188 2.3e-05 15.6 0.0 1 1 6.8e-07 3.1e-05 15.2 0.0 14 148 14 154 2 189 0.77 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_16 - 214 TrkA_N PF02254.13 116 0.00016 13.4 0.0 1 1 5.3e-06 0.00024 12.9 0.0 1 70 3 71 3 96 0.86 # 17424 # 18065 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_2 - 197 AAA_25 PF13481.1 194 0.00012 13.3 0.0 1 1 4.4e-06 0.0002 12.6 0.0 36 65 4 34 2 106 0.83 # 482 # 1072 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_8 - 199 APS_kinase PF01583.15 157 3.8e-05 15.2 0.1 1 2 4.3e-06 0.00019 12.9 0.0 11 39 12 40 4 45 0.91 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 1_8 - 199 APS_kinase PF01583.15 157 3.8e-05 15.2 0.1 2 2 0.096 4.3 -1.3 0.0 67 92 94 119 90 126 0.77 # 8354 # 8950 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.508 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f19eae4a-49e0-487c-902b-655a2a956df9 # Target file: checkm_output/bins/pGCA_002156805.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002156805.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f19eae4a-49e0-487c-902b-655a2a956df9 checkm_output/bins/pGCA_002156805.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:50 2020 # [ok]